Prupe.1G287900_v2.0.a1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000244
Physical Location & Seq
Reverse (-)
28771702 .. 28772634
933 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G287900.1

Sequence Viewer

Length: 582 bp
ATGATCAGTATAGATGAAGACAATGTTTGGGATGAGTATGTGAAGTCTCATGAAGATGCTAGAACTTTTCGATTTAAAGTGATTGCAAACTGGGATGATATAGTGGATTTATGTGGCAAAGATAGAGCTACGGGAGAGGGTGCTGAAACATGTGCAGAAGCTGCTGAGATTATGACTCCTGAGAGTGATCCCAATAATTTTATTGATTTGGAAAGTGATACTCAAGGTTTTGAGAGTTGTCAGGTTGATGATGTTTCACCCAACTCTAGTTGTCCAAAGAGAAGAGATCAAAAACCTTCTGATATTTCCCCACCAAAAAAAAGAGGTACAACTAATGTTCTTGCTGATTCAGTGGCTAAAATGACTTCATCTTTGGAACACTTTATCAATTCTACTACACAAAAGCTTGATCCAATAGAAGTATATAATGAAGTCATTGCAATTCCAGATCTTAGTCCAGATGAACAACTGAAGGCATGCTCTTGGTTTATAGAAAATAAGAAACAGTTTCTCATGTTAAAGACAATTCCAACTGAGAGAAAGAAGGGAATGGTGTTTATGTTTATTTCACCAAAAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

194

Amino Acids

21.74

Weight (kDa)

4.65

Isoelectric Point (pI)

38.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 182, 404
AcuI CTGAAG 1 cut(s) 491
AfaI GTAC 1 cut(s) 328
AflIII ACRYGT 1 cut(s) 149
AluBI AGCT 3 cut(s) 128, 161, 406
AluI AGCT 3 cut(s) 128, 161, 406
Alw26I GTCTC 1 cut(s) 51
AlwI GGATC 2 cut(s) 182, 404
AlwNI CAGNNNCTG 1 cut(s) 161
ApeKI GCWGC 1 cut(s) 161
ArsI GACNNNNNNTTYG 2 cut(s) 355, 387
AsuHPI GGTGA 2 cut(s) 249, 561
BbsI GAAGAC 1 cut(s) 24
BbvI GCAGC 1 cut(s) 148
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 51
BfaI CTAG 2 cut(s) 60, 267
BglII AGATCT 1 cut(s) 448
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
BmrI ACTGGG 1 cut(s) 100
BmsI GCATC 1 cut(s) 46
BmuI ACTGGG 1 cut(s) 100
BpiI GAAGAC 1 cut(s) 24
BpuEI CTTGAG 1 cut(s) 207
Bse1I ACTGG 1 cut(s) 95
Bse3DI GCAATG 1 cut(s) 435
BseGI GGATG 2 cut(s) 37, 100
BseMI GCAATG 1 cut(s) 435
BseMII CTCAG 3 cut(s) 156, 171, 525
BseNI ACTGG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 148
BsgI GTGCAG 1 cut(s) 174
BsmAI GTCTC 1 cut(s) 51
Bsp143I GATC 5 cut(s) 3, 187, 286, 409, 448
BspCNI CTCAG 3 cut(s) 157, 172, 526
BspHI TCATGA 1 cut(s) 49
BspPI GGATC 2 cut(s) 182, 404
BsrDI GCAATG 1 cut(s) 435
BsrI ACTGG 1 cut(s) 95
BssMI GATC 5 cut(s) 3, 187, 286, 409, 448
Bst4CI ACNGT 1 cut(s) 507
Bst6I CTCTTC 1 cut(s) 277
BstAPI GCANNNNNTGC 1 cut(s) 161
BstC8I GCNNGC 1 cut(s) 478
BstDEI CTNAG 4 cut(s) 165, 180, 452, 534
BstF5I GGATG 2 cut(s) 37, 100
BstKTI GATC 5 cut(s) 6, 190, 289, 412, 451
BstMAI GTCTC 1 cut(s) 51
BstMBI GATC 5 cut(s) 3, 187, 286, 409, 448
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNSI RCATGY 2 cut(s) 153, 480
BstV1I GCAGC 1 cut(s) 148
BstV2I GAAGAC 1 cut(s) 24
BstX2I RGATCY 1 cut(s) 448
BstYI RGATCY 1 cut(s) 448
BtsCI GGATG 2 cut(s) 37, 100
BtsIMutI CAGTG 1 cut(s) 357
Cac8I GCNNGC 1 cut(s) 478
CaiI CAGNNNCTG 1 cut(s) 161
CciI TCATGA 1 cut(s) 49
Csp6I GTAC 1 cut(s) 327
CviAII CATG 4 cut(s) 50, 150, 477, 514
CviJI RGCY 4 cut(s) 128, 161, 356, 406
CviKI_1 RGCY 4 cut(s) 128, 161, 356, 406
CviQI GTAC 1 cut(s) 327
DdeI CTNAG 4 cut(s) 165, 180, 452, 534
DpnI GATC 5 cut(s) 5, 189, 288, 411, 450
DpnII GATC 5 cut(s) 3, 187, 286, 409, 448
DraI TTTAAA 1 cut(s) 76
Eam1104I CTCTTC 1 cut(s) 277
EarI CTCTTC 1 cut(s) 277
Eco57I CTGAAG 1 cut(s) 491
FaeI CATG 4 cut(s) 53, 153, 480, 517
FatI CATG 4 cut(s) 49, 149, 476, 513
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 162
FokI GGATG 2 cut(s) 44, 107
Fsp4HI GCNGC 1 cut(s) 162
FspBI CTAG 2 cut(s) 60, 267
GluI GCNGC 1 cut(s) 162
Hin1II CATG 4 cut(s) 53, 153, 480, 517
HindIII AAGCTT 1 cut(s) 404
HinfI GANTC 2 cut(s) 175, 347
HphI GGTGA 2 cut(s) 249, 561
Hpy188I TCNGA 1 cut(s) 301
Hpy188III TCNNGA 4 cut(s) 50, 179, 446, 458
HpyAV CCTTC 3 cut(s) 306, 466, 538
HpyCH4III ACNGT 1 cut(s) 507
HpyCH4V TGCA 3 cut(s) 86, 155, 440
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 4 cut(s) 165, 180, 452, 534
Hsp92II CATG 4 cut(s) 53, 153, 480, 517
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 5 cut(s) 3, 187, 286, 409, 448
LpnPI CCDG 5 cut(s) 76, 192, 227, 459, 471
Lsp1109I GCAGC 1 cut(s) 148
LweI GCATC 1 cut(s) 46
MaeI CTAG 2 cut(s) 60, 267
MalI GATC 5 cut(s) 5, 189, 288, 411, 450
MboI GATC 5 cut(s) 3, 187, 286, 409, 448
MboII GAAGA 3 cut(s) 29, 65, 294
MflI RGATCY 1 cut(s) 448
MluCI AATT 4 cut(s) 196, 388, 441, 525
MlyI GAGTC 1 cut(s) 169
MmeI TCCRAC 1 cut(s) 554
MnlI CCTC 2 cut(s) 130, 317
MseI TTAA 2 cut(s) 75, 518
MslI CAYNNNNRTG 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 161
NdeII GATC 5 cut(s) 3, 187, 286, 409, 448
NlaIII CATG 4 cut(s) 53, 153, 480, 517
NspI RCATGY 2 cut(s) 153, 480
PaeI GCATGC 1 cut(s) 480
PagI TCATGA 1 cut(s) 49
PciI ACATGT 1 cut(s) 149
PfeI GAWTC 1 cut(s) 347
PkrI GCNGC 1 cut(s) 163
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
PscI ACATGT 1 cut(s) 149
PstNI CAGNNNCTG 1 cut(s) 161
PsuI RGATCY 1 cut(s) 448
RsaI GTAC 1 cut(s) 328
RsaNI GTAC 1 cut(s) 327
RseI CAYNNNNRTG 1 cut(s) 54
SaqAI TTAA 2 cut(s) 75, 518
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 5 cut(s) 3, 187, 286, 409, 448
SchI GAGTC 1 cut(s) 169
SetI ASST 7 cut(s) 130, 163, 229, 246, 298, 328, 408
SfaNI GCATC 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 54
SmlI CTYRAG 1 cut(s) 222
SmoI CTYRAG 1 cut(s) 222
SphI GCATGC 1 cut(s) 480
Sse9I AATT 4 cut(s) 196, 388, 441, 525
SspMI CTAG 2 cut(s) 60, 267
TaaI ACNGT 1 cut(s) 507
TaqI TCGA 1 cut(s) 70
TasI AATT 4 cut(s) 196, 388, 441, 525
TfiI GAWTC 1 cut(s) 347
Tru1I TTAA 2 cut(s) 75, 518
Tru9I TTAA 2 cut(s) 75, 518
TscAI CASTG 1 cut(s) 357
TseI GCWGC 1 cut(s) 161
TspDTI ATGAA 5 cut(s) 30, 66, 357, 444, 477
TspRI CASTG 1 cut(s) 357
XceI RCATGY 2 cut(s) 153, 480
XspI CTAG 2 cut(s) 60, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.