RchiOBHm_Chr5g0052461

Lysosomal Pro-X

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0017520
Physical Location & Seq
Forward (+)
54406328 .. 54407362
1035 bp
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UTR
Exon/CDS
Intron
PRQ32986

Sequence Viewer

Length: 267 bp
ATGGGGGAATGCATGCAGGCAGCATGGTTTCGCCTCAAATACCCGCACATTGCTGTGGGGGCATTGGCCTCTTCCGCCCCACTTCTTTACTTTGATGACATTACACCATCAGATGGGCTTCATTCCGTGGTCACAAACAATTTCAGGGAAGCGAGTGAGAACTGCTACAATACCATAAAGAAATCATGGTCTGAAATCGATAGAATTGCTGTTCACCAAGACGATGGTCTTGACATCCTCACGGAGAAATTTCAAACTTGCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04614 ko04974 map04614 map04974
Pfam Domains
Protein Families
Peptidase_S28

Protein Analysis

88

Amino Acids

9.93

Weight (kDa)

4.83

Isoelectric Point (pI)

33.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S28 PF05577 6 - 88 6.2e-15 Serine carboxypeptidase S28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017520)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28680
fragaria_vesca FvH4_3g28620
rosa_chinensis RchiOBHm_Chr5g0052461 RchiOBHm_Chr5g0052471
rosa_laevigata RLG00000034817
rosa_multiflora Rmu_sc0006803.1_g000044
rosa_roxburghii Rroxscaffold_1G00028350
rosa_rugosa Rorug05G0271800
rosa_samantha Rh5BG355500 Rh5CG380900 Rh5DG370700
rosa_wichuraiana Rw5G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 113
AciI CCGC 2 cut(s) 44, 75
AcsI RAATTY 1 cut(s) 248
AfiI CCNNNNNNNGG 1 cut(s) 113
AgsI TTSAA 1 cut(s) 254
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 206
BbvI GCAGC 1 cut(s) 32
BccI CCATC 3 cut(s) 107, 115, 218
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
BoxI GACNNNNGTC 1 cut(s) 225
Bsa29I ATCGAT 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 126
Bsc4I CCNNNNNNNGG 1 cut(s) 113
Bse3DI GCAATG 1 cut(s) 48
BseCI ATCGAT 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 234
BseLI CCNNNNNNNGG 1 cut(s) 113
BseMI GCAATG 1 cut(s) 48
BseXI GCAGC 1 cut(s) 32
BshFI GGCC 1 cut(s) 68
BshVI ATCGAT 1 cut(s) 198
BslI CCNNNNNNNGG 1 cut(s) 113
BsmI GAATGC 1 cut(s) 14
BsnI GGCC 1 cut(s) 68
BspACI CCGC 2 cut(s) 44, 75
BspANI GGCC 1 cut(s) 68
BspDI ATCGAT 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 126
Bst6I CTCTTC 1 cut(s) 76
BstC8I GCNNGC 2 cut(s) 14, 18
BstDSI CCRYGG 1 cut(s) 126
BstF5I GGATG 1 cut(s) 234
BstMWI GCNNNNNNNGC 2 cut(s) 59, 74
BstNSI RCATGY 1 cut(s) 16
BstPAI GACNNNNGTC 1 cut(s) 225
BstV1I GCAGC 1 cut(s) 32
BstXI CCANNNNNNTGG 1 cut(s) 224
Bsu15I ATCGAT 1 cut(s) 198
BsuRI GGCC 1 cut(s) 68
BsuTUI ATCGAT 1 cut(s) 198
BtgI CCRYGG 1 cut(s) 126
BtsCI GGATG 1 cut(s) 234
Cac8I GCNNGC 2 cut(s) 14, 18
ClaI ATCGAT 1 cut(s) 198
CviAII CATG 3 cut(s) 13, 24, 186
CviJI RGCY 2 cut(s) 68, 118
CviKI_1 RGCY 2 cut(s) 68, 118
Eam1104I CTCTTC 1 cut(s) 76
EarI CTCTTC 1 cut(s) 76
EciI GGCGGA 1 cut(s) 64
EcoT22I ATGCAT 1 cut(s) 14
FaeI CATG 3 cut(s) 16, 27, 189
FaiI YATR 4 cut(s) 14, 25, 176, 187
FatI CATG 3 cut(s) 12, 23, 185
FauI CCCGC 1 cut(s) 51
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 1 cut(s) 21
GluI GCNGC 1 cut(s) 21
HaeIII GGCC 1 cut(s) 68
Hin1II CATG 3 cut(s) 16, 27, 189
HphI GGTGA 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 214
Hpy188I TCNGA 2 cut(s) 112, 193
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 1 cut(s) 214
HpyCH4V TGCA 2 cut(s) 12, 16
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 74
Hsp92II CATG 3 cut(s) 16, 27, 189
LpnPI CCDG 2 cut(s) 2, 130
Lsp1109I GCAGC 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 130
MboII GAAGA 1 cut(s) 63
MluCI AATT 3 cut(s) 139, 204, 248
MnlI CCTC 3 cut(s) 44, 79, 248
Mph1103I ATGCAT 1 cut(s) 14
MslI CAYNNNNRTG 1 cut(s) 53
Mva1269I GAATGC 1 cut(s) 14
MwoI GCNNNNNNNGC 2 cut(s) 59, 74
NlaIII CATG 3 cut(s) 16, 27, 189
NmuCI GTSAC 1 cut(s) 130
NsiI ATGCAT 1 cut(s) 14
NspI RCATGY 1 cut(s) 16
PaeI GCATGC 1 cut(s) 16
PctI GAATGC 1 cut(s) 14
PflMI CCANNNNNTGG 1 cut(s) 113
PkrI GCNGC 1 cut(s) 22
PshAI GACNNNNGTC 1 cut(s) 225
RseI CAYNNNNRTG 1 cut(s) 53
SatI GCNGC 1 cut(s) 21
SmiMI CAYNNNNRTG 1 cut(s) 53
SphI GCATGC 1 cut(s) 16
Sse9I AATT 3 cut(s) 139, 204, 248
SsiI CCGC 2 cut(s) 44, 75
TaqI TCGA 1 cut(s) 198
TasI AATT 3 cut(s) 139, 204, 248
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 1 cut(s) 110
TspGWI ACGGA 2 cut(s) 115, 257
Van91I CCANNNNNTGG 1 cut(s) 113
XapI RAATTY 1 cut(s) 248
XceI RCATGY 1 cut(s) 16
Zsp2I ATGCAT 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.