Rh5CG380900

Lysosomal Pro-X

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0017520
Physical Location & Seq
Reverse (-)
49771944 .. 49773616
1673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG380900.1

Sequence Viewer

Length: 879 bp
ATGGGGGAATGCTTGCAGCATGATGGGCTTCATTCCGTGGTCACAAACAATTTCAGGGAAGCGAGTGAGAAATGCTACAATACCATAAAGAAATCATGGTCTGAAATCGATAGAATCGCTGTTCACCAAGACGATGGTCTTGACATCCTCACTGAGAAATTTCAAACTTGCGAACCTTTGGAGGATGGAGATGAACTCGAGCTAAAGGCCTACTTGGAGTTCATATATATAACTGCATCTCAGTATGATGACCCTCCAACATATCCAGTCAATCAGATCTGCAACAGTATAAATGCAGCAGCAGACAGAGGAGATGATATCATTGATCGAATTGCCTCGGCTGTTAATTATACTCGTCGAGGAGGGAATAGAGGTCAATGCTTGGACCTAAGTAGCGAACTTCGCCCATCAGATGATGCAGTGGATGGTTTGAACTGGTTATGGCAGGCATGTACTGAAATTTTTATGCCAATCGGTCGAGAAACGAACGAGACTATGTTCCAGGCAGAACCATTTGATGCGGATTCCTACACTCAAAGGTGCCACCAGTTATATCAAGGTGCCCGCCCTAGACCCCATTGGATTACAACTTATTATGGGGGGCATCATATAAGGATGACCTTGGAGAGGTTTGCCAGTAACATCATCTTCTCAAATGGCCAGCGTGATCCTTTTAGCGTTGCCGGAGTATTGACAAATATATCGCCCAGCATAGTAGCCGTGACTACACGTCAAGGTTCTCATTGCTTGGACTTATTACCTGCAAGGATAAACGATCCCAGATGGTTAGTTGTGCAGCGACACATAGAAGTTGGGATTATCACAGGATGGATTCGCAACTACTACAATGATTTGCGTATCTTTTCTTCTGAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04614 ko04974 map04614 map04974
Pfam Domains
Protein Families
Peptidase_S28

Protein Analysis

292

Amino Acids

33.33

Weight (kDa)

5.03

Isoelectric Point (pI)

47.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S28 PF05577 12 - 268 1.4e-30 Serine carboxypeptidase S28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017520)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28680
fragaria_vesca FvH4_3g28620
rosa_chinensis RchiOBHm_Chr5g0052461 RchiOBHm_Chr5g0052471
rosa_laevigata RLG00000034817
rosa_multiflora Rmu_sc0006803.1_g000044
rosa_roxburghii Rroxscaffold_1G00028350
rosa_rugosa Rorug05G0271800
rosa_samantha Rh5BG355500 Rh5CG380900 Rh5DG370700
rosa_wichuraiana Rw5G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 769
AccB1I GGYRCC 2 cut(s) 540, 560
AciI CCGC 2 cut(s) 521, 565
AclWI GGATC 2 cut(s) 662, 770
AcoI YGGCCR 1 cut(s) 658
AcsI RAATTY 2 cut(s) 158, 459
AfaI GTAC 1 cut(s) 454
AfiI CCNNNNNNNGG 1 cut(s) 627
AflIII ACRYGT 1 cut(s) 728
AgsI TTSAA 2 cut(s) 164, 433
AhdI GACNNNNNGTC 1 cut(s) 729
AjiI CACGTC 1 cut(s) 731
AjnI CCWGG 1 cut(s) 501
AluBI AGCT 1 cut(s) 202
AluI AGCT 1 cut(s) 202
Alw26I GTCTC 1 cut(s) 485
AlwI GGATC 2 cut(s) 662, 770
Ama87I CYCGRG 1 cut(s) 197
AoxI GGCC 2 cut(s) 207, 658
ApeKI GCWGC 4 cut(s) 16, 296, 299, 796
ApoI RAATTY 2 cut(s) 158, 459
AspS9I GGNCC 1 cut(s) 385
AsuHPI GGTGA 1 cut(s) 116
AvaI CYCGRG 1 cut(s) 197
AvaII GGWCC 1 cut(s) 385
BaeGI GKGCMC 1 cut(s) 565
BalI TGGCCA 1 cut(s) 660
BanI GGYRCC 2 cut(s) 540, 560
BarI GAAGNNNNNNTAC 1 cut(s) 850
BbvI GCAGC 4 cut(s) 28, 308, 311, 808
BccI CCATC 7 cut(s) 17, 128, 179, 415, 419, 777, 822
BceAI ACGGC 1 cut(s) 704
BciT130I CCWGG 1 cut(s) 503
BcoDI GTCTC 1 cut(s) 485
BfaI CTAG 1 cut(s) 570
BfuAI ACCTGC 1 cut(s) 769
BglII AGATCT 1 cut(s) 276
BisI GCNGC 4 cut(s) 17, 297, 300, 797
BlsI GCNGC 4 cut(s) 18, 298, 301, 798
Bme1390I CCNGG 1 cut(s) 503
Bme18I GGWCC 1 cut(s) 385
BmeRI GACNNNNNGTC 1 cut(s) 729
BmeT110I CYCGRG 1 cut(s) 197
BmgBI CACGTC 1 cut(s) 731
BmgT120I GGNCC 1 cut(s) 385
BmiI GGNNCC 2 cut(s) 542, 562
BmrFI CCNGG 1 cut(s) 503
BmsI GCATC 4 cut(s) 245, 406, 508, 613
BoxI GACNNNNGTC 1 cut(s) 135
BplI GAGNNNNNCTC 2 cut(s) 180, 212
Bsa29I ATCGAT 1 cut(s) 108
BsaJI CCNNGG 3 cut(s) 36, 336, 621
Bsc4I CCNNNNNNNGG 1 cut(s) 627
Bse1I ACTGG 4 cut(s) 266, 440, 547, 636
Bse3DI GCAATG 1 cut(s) 742
BseBI CCWGG 1 cut(s) 503
BseCI ATCGAT 1 cut(s) 108
BseDI CCNNGG 3 cut(s) 36, 336, 621
BseGI GGATG 5 cut(s) 144, 190, 430, 621, 833
BseLI CCNNNNNNNGG 1 cut(s) 627
BseMI GCAATG 1 cut(s) 742
BseMII CTCAG 3 cut(s) 144, 254, 861
BseNI ACTGG 4 cut(s) 266, 440, 547, 636
BseRI GAGGAG 2 cut(s) 324, 375
BseSI GKGCMC 1 cut(s) 565
BseXI GCAGC 4 cut(s) 28, 308, 311, 808
BseYI CCCAGC 1 cut(s) 707
BsgI GTGCAG 1 cut(s) 815
Bsh1285I CGRYCG 1 cut(s) 478
BshFI GGCC 2 cut(s) 209, 660
BshNI GGYRCC 2 cut(s) 540, 560
BshVI ATCGAT 1 cut(s) 108
BsiEI CGRYCG 1 cut(s) 478
BsiHKCI CYCGRG 1 cut(s) 197
BsiSI CCGG 1 cut(s) 684
BslI CCNNNNNNNGG 1 cut(s) 627
BsmAI GTCTC 1 cut(s) 485
BsmI GAATGC 1 cut(s) 14
BsnI GGCC 2 cut(s) 209, 660
BsoBI CYCGRG 1 cut(s) 197
Bsp1286I GDGCHC 1 cut(s) 565
Bsp143I GATC 4 cut(s) 276, 325, 667, 775
BspACI CCGC 2 cut(s) 521, 565
BspANI GGCC 2 cut(s) 209, 660
BspCNI CTCAG 3 cut(s) 145, 253, 862
BspDI ATCGAT 1 cut(s) 108
BspLI GGNNCC 2 cut(s) 542, 562
BspMI ACCTGC 1 cut(s) 769
BspPI GGATC 2 cut(s) 662, 770
BspT107I GGYRCC 2 cut(s) 540, 560
BsrDI GCAATG 1 cut(s) 742
BsrI ACTGG 4 cut(s) 266, 440, 547, 636
BssECI CCNNGG 3 cut(s) 36, 336, 621
BssMI GATC 4 cut(s) 276, 325, 667, 775
BssT1I CCWWGG 1 cut(s) 621
Bst2UI CCWGG 1 cut(s) 503
Bst4CI ACNGT 1 cut(s) 287
BstC8I GCNNGC 4 cut(s) 14, 447, 565, 662
BstDEI CTNAG 4 cut(s) 153, 240, 389, 870
BstDSI CCRYGG 1 cut(s) 36
BstENI CCTNNNNNAGG 1 cut(s) 625
BstF5I GGATG 5 cut(s) 144, 190, 430, 621, 833
BstKTI GATC 4 cut(s) 279, 328, 670, 778
BstMAI GTCTC 1 cut(s) 485
BstMBI GATC 4 cut(s) 276, 325, 667, 775
BstMCI CGRYCG 1 cut(s) 478
BstMWI GCNNNNNNNGC 2 cut(s) 25, 402
BstNI CCWGG 1 cut(s) 503
BstNSI RCATGY 1 cut(s) 453
BstPAI GACNNNNGTC 1 cut(s) 135
BstSCI CCNGG 1 cut(s) 501
BstSLI GKGCMC 1 cut(s) 565
BstV1I GCAGC 4 cut(s) 28, 308, 311, 808
BstX2I RGATCY 1 cut(s) 276
BstXI CCANNNNNNTGG 1 cut(s) 134
BstYI RGATCY 1 cut(s) 276
Bsu15I ATCGAT 1 cut(s) 108
BsuRI GGCC 2 cut(s) 209, 660
BsuTUI ATCGAT 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 36
BtrI CACGTC 1 cut(s) 731
BtsCI GGATG 5 cut(s) 144, 190, 430, 621, 833
BtsI GCAGTG 1 cut(s) 426
BtsIMutI CAGTG 2 cut(s) 150, 426
BveI ACCTGC 1 cut(s) 769
Cac8I GCNNGC 4 cut(s) 14, 447, 565, 662
Cfr13I GGNCC 1 cut(s) 385
ClaI ATCGAT 1 cut(s) 108
Csp6I GTAC 1 cut(s) 453
CviAII CATG 3 cut(s) 20, 96, 450
CviJI RGCY 6 cut(s) 28, 202, 209, 341, 660, 719
CviKI_1 RGCY 6 cut(s) 28, 202, 209, 341, 660, 719
CviQI GTAC 1 cut(s) 453
DdeI CTNAG 4 cut(s) 153, 240, 389, 870
DpnI GATC 4 cut(s) 278, 327, 669, 777
DpnII GATC 4 cut(s) 276, 325, 667, 775
DriI GACNNNNNGTC 1 cut(s) 729
EaeI YGGCCR 1 cut(s) 658
Eam1105I GACNNNNNGTC 1 cut(s) 729
Eco130I CCWWGG 1 cut(s) 621
Eco147I AGGCCT 1 cut(s) 209
Eco32I GATATC 1 cut(s) 319
Eco47I GGWCC 1 cut(s) 385
Eco88I CYCGRG 1 cut(s) 197
EcoNI CCTNNNNNAGG 1 cut(s) 625
EcoRII CCWGG 1 cut(s) 501
EcoRV GATATC 1 cut(s) 319
EcoT14I CCWWGG 1 cut(s) 621
ErhI CCWWGG 1 cut(s) 621
FaeI CATG 3 cut(s) 23, 99, 453
FalI AAGNNNNNCTT 2 cut(s) 197, 229
FatI CATG 3 cut(s) 19, 95, 449
FauI CCCGC 1 cut(s) 572
Fnu4HI GCNGC 4 cut(s) 17, 297, 300, 797
FokI GGATG 5 cut(s) 131, 197, 437, 628, 840
Fsp4HI GCNGC 4 cut(s) 17, 297, 300, 797
FspBI CTAG 1 cut(s) 570
GluI GCNGC 4 cut(s) 17, 297, 300, 797
GsaI CCCAGC 1 cut(s) 711
HaeIII GGCC 2 cut(s) 209, 660
HapII CCGG 1 cut(s) 684
Hin1II CATG 3 cut(s) 23, 99, 453
HinfI GANTC 3 cut(s) 114, 524, 832
HpaII CCGG 1 cut(s) 684
HphI GGTGA 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 4 cut(s) 103, 276, 412, 871
Hpy188III TCNNGA 2 cut(s) 140, 479
Hpy8I GTNNAC 1 cut(s) 124
Hpy99I CGWCG 1 cut(s) 360
HpyCH4III ACNGT 1 cut(s) 287
HpyCH4IV ACGT 1 cut(s) 730
HpyCH4V TGCA 7 cut(s) 16, 236, 282, 296, 419, 764, 796
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 402
HpyF3I CTNAG 4 cut(s) 153, 240, 389, 870
HpySE526I ACGT 1 cut(s) 730
Hsp92II CATG 3 cut(s) 23, 99, 453
Kzo9I GATC 4 cut(s) 276, 325, 667, 775
Lsp1109I GCAGC 4 cut(s) 28, 308, 311, 808
LweI GCATC 4 cut(s) 245, 406, 508, 613
MaeI CTAG 1 cut(s) 570
MaeII ACGT 1 cut(s) 730
MaeIII GTNAC 3 cut(s) 40, 638, 721
MalI GATC 4 cut(s) 278, 327, 669, 777
MboI GATC 4 cut(s) 276, 325, 667, 775
MboII GAAGA 2 cut(s) 640, 858
MflI RGATCY 1 cut(s) 276
MhlI GDGCHC 1 cut(s) 565
MlsI TGGCCA 1 cut(s) 660
MluCI AATT 5 cut(s) 49, 158, 330, 346, 459
MluNI TGGCCA 1 cut(s) 660
MmeI TCCRAC 1 cut(s) 281
MnlI CCTC 9 cut(s) 158, 175, 264, 302, 346, 353, 356, 365, 621
Mox20I TGGCCA 1 cut(s) 660
MscI TGGCCA 1 cut(s) 660
MseI TTAA 1 cut(s) 345
Msp20I TGGCCA 1 cut(s) 660
MspI CCGG 1 cut(s) 684
MspR9I CCNGG 1 cut(s) 503
Mva1269I GAATGC 1 cut(s) 14
MvaI CCWGG 1 cut(s) 503
MwoI GCNNNNNNNGC 2 cut(s) 25, 402
NdeII GATC 4 cut(s) 276, 325, 667, 775
NlaIII CATG 3 cut(s) 23, 99, 453
NlaIV GGNNCC 2 cut(s) 542, 562
NmeAIII GCCGAG 1 cut(s) 317
NmuCI GTSAC 2 cut(s) 40, 721
NspI RCATGY 1 cut(s) 453
PaeR7I CTCGAG 1 cut(s) 197
PceI AGGCCT 1 cut(s) 209
PctI GAATGC 1 cut(s) 14
PfeI GAWTC 3 cut(s) 114, 524, 832
PkrI GCNGC 4 cut(s) 18, 298, 301, 798
PshAI GACNNNNGTC 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 501
PspFI CCCAGC 1 cut(s) 707
PspGI CCWGG 1 cut(s) 501
PspN4I GGNNCC 2 cut(s) 542, 562
PspPI GGNCC 1 cut(s) 385
PspXI VCTCGAGB 1 cut(s) 197
PsuI RGATCY 1 cut(s) 276
RsaI GTAC 1 cut(s) 454
RsaNI GTAC 1 cut(s) 453
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 4 cut(s) 17, 297, 300, 797
Sau3AI GATC 4 cut(s) 276, 325, 667, 775
Sau96I GGNCC 1 cut(s) 385
ScrFI CCNGG 1 cut(s) 503
SduI GDGCHC 1 cut(s) 565
SfaNI GCATC 4 cut(s) 245, 406, 508, 613
Sfr274I CTCGAG 1 cut(s) 197
SinI GGWCC 1 cut(s) 385
SlaI CTCGAG 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 5 cut(s) 49, 158, 330, 346, 459
SseBI AGGCCT 1 cut(s) 209
SsiI CCGC 2 cut(s) 521, 565
SspMI CTAG 1 cut(s) 570
StuI AGGCCT 1 cut(s) 209
StyD4I CCNGG 1 cut(s) 501
StyI CCWWGG 1 cut(s) 621
TaaI ACNGT 1 cut(s) 287
TaiI ACGT 1 cut(s) 733
TaqI TCGA 5 cut(s) 108, 198, 328, 358, 478
TaqII GACCGA 1 cut(s) 464
TasI AATT 5 cut(s) 49, 158, 330, 346, 459
TatI WGTACW 1 cut(s) 452
TfiI GAWTC 3 cut(s) 114, 524, 832
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 2 cut(s) 157, 426
TseFI GTSAC 2 cut(s) 40, 721
TseI GCWGC 4 cut(s) 16, 296, 299, 796
Tsp45I GTSAC 2 cut(s) 40, 721
TspDTI ATGAA 3 cut(s) 20, 207, 211
TspGWI ACGGA 1 cut(s) 25
TspRI CASTG 2 cut(s) 157, 426
VpaK11BI GGWCC 1 cut(s) 385
XagI CCTNNNNNAGG 1 cut(s) 625
XapI RAATTY 2 cut(s) 158, 459
XceI RCATGY 1 cut(s) 453
XhoI CTCGAG 1 cut(s) 197
XspI CTAG 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.