Rmu_sc0006803.1_g000044

Lysosomal Pro-X

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006803.1
OG0017520
Physical Location & Seq
Reverse (-)
218989 .. 220780
1792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006803.1_g000044.1.cds

Sequence Viewer

Length: 927 bp
atgcaggatatatacaatgctaccagcctcggatatctgaactccgcgcaagctctggccgattatgcagaaattatactacacttgaagaggaatttatcggccgttgcttctccagtaattgtcattggaggctctttatgggggaacatggtttcgcctcaaaaatacccgcacattgctgtgggggcattggcctcttccgccccacttctttactttgatgacattacaccatcagatgggcttcattccgtggaagcgagtgagaactgctacaataccataaagaaatcatggtctgaaatcgatagaattgctgttcaccaagacgatgtcaatcagatctgcaacagtataaatgcagcagcagacagaggagatgatatcattgatcgaattgcctcggctgttaattatactcgtccaggagagaatagaggtcaatgcttggacctaagtagcgaacttcacccatcagatgatgcagtggatggtttgaactggttatggcaggcatgtactgaaatttttatgccaatcggtcgagaaacggacgagactatgtttcaggcagaaccatttgatgcggattcctacactcaaaggtgccaccagttatatcaaggtgcccgccctagaccccattggatcacaacttattatggggggcatcatataaggatgaccttggagaggtttgccagtaacatcatcttctcaaatggccagcgtgatccttttagcgttgccggagtattgacaaatatattgcccagcatagtagccgtgactacatgtcaaggttctcattgcttggacttattacctgcaaggataaatgatcccagatggttagttgtgcagcgacacatagaagttgggattatcacaggatgcattcgcaaatcgcaactactacaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04614 ko04974 map04614 map04974
Pfam Domains
Protein Families
Peptidase_S28

Protein Analysis

308

Amino Acids

34.15

Weight (kDa)

5.27

Isoelectric Point (pI)

45.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017520)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28680
fragaria_vesca FvH4_3g28620
rosa_chinensis RchiOBHm_Chr5g0052461 RchiOBHm_Chr5g0052471
rosa_laevigata RLG00000034817
rosa_multiflora Rmu_sc0006803.1_g000044
rosa_roxburghii Rroxscaffold_1G00028350
rosa_rugosa Rorug05G0271800
rosa_samantha Rh5BG355500 Rh5CG380900 Rh5DG370700
rosa_wichuraiana Rw5G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 838
AccB1I GGYRCC 2 cut(s) 609, 629
AccB7I CCANNNNNTGG 1 cut(s) 242
AccII CGCG 1 cut(s) 47
AciI CCGC 5 cut(s) 45, 173, 204, 590, 634
AclWI GGATC 3 cut(s) 659, 731, 839
AcoI YGGCCR 3 cut(s) 57, 102, 727
AcsI RAATTY 2 cut(s) 94, 528
AfaI GTAC 1 cut(s) 523
AfiI CCNNNNNNNGG 2 cut(s) 242, 696
AflIII ACRYGT 1 cut(s) 797
AgsI TTSAA 2 cut(s) 88, 502
AhdI GACNNNNNGTC 1 cut(s) 798
AjnI CCWGG 1 cut(s) 427
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw26I GTCTC 1 cut(s) 554
AlwI GGATC 3 cut(s) 659, 731, 839
AoxI GGCC 4 cut(s) 57, 102, 195, 727
ApeKI GCWGC 3 cut(s) 365, 368, 865
ApoI RAATTY 2 cut(s) 94, 528
AspLEI GCGC 1 cut(s) 49
AspS9I GGNCC 1 cut(s) 454
AsuHPI GGTGA 2 cut(s) 317, 464
AvaII GGWCC 1 cut(s) 454
BaeGI GKGCMC 1 cut(s) 634
BalI TGGCCA 1 cut(s) 729
BanI GGYRCC 2 cut(s) 609, 629
BbvI GCAGC 3 cut(s) 377, 380, 877
BccI CCATC 5 cut(s) 236, 244, 484, 488, 846
BceAI ACGGC 2 cut(s) 89, 773
BcgI CGANNNNNNTGC 2 cut(s) 299, 333
BciT130I CCWGG 1 cut(s) 429
BcoDI GTCTC 1 cut(s) 554
BfaI CTAG 1 cut(s) 639
BfuAI ACCTGC 1 cut(s) 838
BglII AGATCT 1 cut(s) 345
BisI GCNGC 3 cut(s) 366, 369, 866
BlsI GCNGC 3 cut(s) 367, 370, 867
Bme1390I CCNGG 1 cut(s) 429
Bme18I GGWCC 1 cut(s) 454
BmeRI GACNNNNNGTC 1 cut(s) 798
BmgT120I GGNCC 1 cut(s) 454
BmiI GGNNCC 2 cut(s) 611, 631
BmrFI CCNGG 1 cut(s) 429
BmsI GCATC 4 cut(s) 475, 577, 682, 887
BpmI CTGGAG 1 cut(s) 99
Bsa29I ATCGAT 1 cut(s) 309
BsaBI GATNNNNATC 1 cut(s) 339
BsaJI CCNNGG 4 cut(s) 28, 255, 405, 690
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 696
Bse1I ACTGG 4 cut(s) 116, 509, 616, 705
Bse3DI GCAATG 2 cut(s) 177, 811
Bse8I GATNNNNATC 1 cut(s) 339
BseBI CCWGG 1 cut(s) 429
BseCI ATCGAT 1 cut(s) 309
BseDI CCNNGG 4 cut(s) 28, 255, 405, 690
BseGI GGATG 3 cut(s) 499, 690, 902
BseJI GATNNNNATC 1 cut(s) 339
BseLI CCNNNNNNNGG 2 cut(s) 242, 696
BseMI GCAATG 2 cut(s) 177, 811
BseNI ACTGG 4 cut(s) 116, 509, 616, 705
BseRI GAGGAG 1 cut(s) 393
BseSI GKGCMC 1 cut(s) 634
BseX3I CGGCCG 1 cut(s) 102
BseXI GCAGC 3 cut(s) 377, 380, 877
BseYI CCCAGC 1 cut(s) 776
BsgI GTGCAG 1 cut(s) 884
Bsh1236I CGCG 1 cut(s) 47
Bsh1285I CGRYCG 2 cut(s) 105, 547
BshFI GGCC 4 cut(s) 59, 104, 197, 729
BshNI GGYRCC 2 cut(s) 609, 629
BshVI ATCGAT 1 cut(s) 309
BsiEI CGRYCG 2 cut(s) 105, 547
BsiSI CCGG 1 cut(s) 753
BslI CCNNNNNNNGG 2 cut(s) 242, 696
BsmAI GTCTC 1 cut(s) 554
BsmI GAATGC 1 cut(s) 900
BsnI GGCC 4 cut(s) 59, 104, 197, 729
Bsp1286I GDGCHC 1 cut(s) 634
Bsp143I GATC 5 cut(s) 345, 394, 651, 736, 844
BspACI CCGC 5 cut(s) 45, 173, 204, 590, 634
BspANI GGCC 4 cut(s) 59, 104, 197, 729
BspDI ATCGAT 1 cut(s) 309
BspFNI CGCG 1 cut(s) 47
BspLI GGNNCC 2 cut(s) 611, 631
BspMI ACCTGC 1 cut(s) 838
BspPI GGATC 3 cut(s) 659, 731, 839
BspT107I GGYRCC 2 cut(s) 609, 629
BsrDI GCAATG 2 cut(s) 177, 811
BsrI ACTGG 4 cut(s) 116, 509, 616, 705
BssECI CCNNGG 4 cut(s) 28, 255, 405, 690
BssMI GATC 5 cut(s) 345, 394, 651, 736, 844
BssT1I CCWWGG 1 cut(s) 690
Bst2UI CCWGG 1 cut(s) 429
Bst4CI ACNGT 1 cut(s) 356
Bst6I CTCTTC 2 cut(s) 83, 205
BstC8I GCNNGC 4 cut(s) 51, 516, 634, 731
BstDEI CTNAG 1 cut(s) 458
BstDSI CCRYGG 1 cut(s) 255
BstENI CCTNNNNNAGG 1 cut(s) 694
BstF5I GGATG 3 cut(s) 499, 690, 902
BstFNI CGCG 1 cut(s) 47
BstHHI GCGC 1 cut(s) 49
BstKTI GATC 5 cut(s) 348, 397, 654, 739, 847
BstMAI GTCTC 1 cut(s) 554
BstMBI GATC 5 cut(s) 345, 394, 651, 736, 844
BstMCI CGRYCG 2 cut(s) 105, 547
BstMWI GCNNNNNNNGC 3 cut(s) 65, 188, 203
BstNI CCWGG 1 cut(s) 429
BstNSI RCATGY 2 cut(s) 522, 801
BstSCI CCNGG 1 cut(s) 427
BstSLI GKGCMC 1 cut(s) 634
BstUI CGCG 1 cut(s) 47
BstV1I GCAGC 3 cut(s) 377, 380, 877
BstX2I RGATCY 1 cut(s) 345
BstYI RGATCY 1 cut(s) 345
BstZI CGGCCG 1 cut(s) 102
Bsu15I ATCGAT 1 cut(s) 309
BsuRI GGCC 4 cut(s) 59, 104, 197, 729
BsuTUI ATCGAT 1 cut(s) 309
BtgI CCRYGG 1 cut(s) 255
BtsCI GGATG 3 cut(s) 499, 690, 902
BtsI GCAGTG 1 cut(s) 495
BtsIMutI CAGTG 1 cut(s) 495
BveI ACCTGC 1 cut(s) 838
Cac8I GCNNGC 4 cut(s) 51, 516, 634, 731
CfoI GCGC 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 454
ClaI ATCGAT 1 cut(s) 309
Csp6I GTAC 1 cut(s) 522
CviAII CATG 4 cut(s) 151, 297, 519, 798
CviQI GTAC 1 cut(s) 522
DdeI CTNAG 1 cut(s) 458
DpnI GATC 5 cut(s) 347, 396, 653, 738, 846
DpnII GATC 5 cut(s) 345, 394, 651, 736, 844
DriI GACNNNNNGTC 1 cut(s) 798
EaeI YGGCCR 3 cut(s) 57, 102, 727
EagI CGGCCG 1 cut(s) 102
Eam1104I CTCTTC 2 cut(s) 83, 205
Eam1105I GACNNNNNGTC 1 cut(s) 798
EarI CTCTTC 2 cut(s) 83, 205
EciI GGCGGA 1 cut(s) 193
EclXI CGGCCG 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 690
Eco32I GATATC 2 cut(s) 35, 388
Eco47I GGWCC 1 cut(s) 454
Eco52I CGGCCG 1 cut(s) 102
EcoNI CCTNNNNNAGG 1 cut(s) 694
EcoRII CCWGG 1 cut(s) 427
EcoRV GATATC 2 cut(s) 35, 388
EcoT14I CCWWGG 1 cut(s) 690
EcoT22I ATGCAT 1 cut(s) 902
ErhI CCWWGG 1 cut(s) 690
FaeI CATG 4 cut(s) 154, 300, 522, 801
FatI CATG 4 cut(s) 150, 296, 518, 797
FauI CCCGC 2 cut(s) 180, 641
Fnu4HI GCNGC 3 cut(s) 366, 369, 866
FokI GGATG 3 cut(s) 506, 697, 909
Fsp4HI GCNGC 3 cut(s) 366, 369, 866
FspBI CTAG 1 cut(s) 639
GlaI GCGC 1 cut(s) 48
GluI GCNGC 3 cut(s) 366, 369, 866
GsaI CCCAGC 1 cut(s) 780
GsuI CTGGAG 1 cut(s) 99
HaeIII GGCC 4 cut(s) 59, 104, 197, 729
HapII CCGG 1 cut(s) 753
HhaI GCGC 1 cut(s) 49
Hin1II CATG 4 cut(s) 154, 300, 522, 801
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HinfI GANTC 1 cut(s) 593
HpaII CCGG 1 cut(s) 753
HphI GGTGA 2 cut(s) 317, 464
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 6 cut(s) 32, 39, 241, 304, 345, 481
Hpy188III TCNNGA 1 cut(s) 548
Hpy8I GTNNAC 1 cut(s) 325
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4V TGCA 8 cut(s) 4, 68, 351, 365, 488, 833, 865, 900
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 188, 203
HpyF3I CTNAG 1 cut(s) 458
Hsp92II CATG 4 cut(s) 154, 300, 522, 801
HspAI GCGC 1 cut(s) 47
Kzo9I GATC 5 cut(s) 345, 394, 651, 736, 844
Lsp1109I GCAGC 3 cut(s) 377, 380, 877
LweI GCATC 4 cut(s) 475, 577, 682, 887
MaeI CTAG 1 cut(s) 639
MaeIII GTNAC 2 cut(s) 707, 790
MalI GATC 5 cut(s) 347, 396, 653, 738, 846
MboI GATC 5 cut(s) 345, 394, 651, 736, 844
MboII GAAGA 3 cut(s) 100, 192, 709
MflI RGATCY 1 cut(s) 345
MhlI GDGCHC 1 cut(s) 634
MlsI TGGCCA 1 cut(s) 729
MluCI AATT 7 cut(s) 72, 94, 120, 315, 399, 415, 528
MluNI TGGCCA 1 cut(s) 729
MnlI CCTC 9 cut(s) 38, 84, 125, 171, 208, 371, 415, 434, 690
Mox20I TGGCCA 1 cut(s) 729
Mph1103I ATGCAT 1 cut(s) 902
MscI TGGCCA 1 cut(s) 729
MseI TTAA 1 cut(s) 414
MslI CAYNNNNRTG 1 cut(s) 182
Msp20I TGGCCA 1 cut(s) 729
MspI CCGG 1 cut(s) 753
MspR9I CCNGG 1 cut(s) 429
Mva1269I GAATGC 1 cut(s) 900
MvaI CCWGG 1 cut(s) 429
MvnI CGCG 1 cut(s) 47
MwoI GCNNNNNNNGC 3 cut(s) 65, 188, 203
NdeII GATC 5 cut(s) 345, 394, 651, 736, 844
NlaIII CATG 4 cut(s) 154, 300, 522, 801
NlaIV GGNNCC 2 cut(s) 611, 631
NmeAIII GCCGAG 1 cut(s) 386
NmuCI GTSAC 1 cut(s) 790
NsiI ATGCAT 1 cut(s) 902
NspI RCATGY 2 cut(s) 522, 801
PciI ACATGT 1 cut(s) 797
PctI GAATGC 1 cut(s) 900
PfeI GAWTC 1 cut(s) 593
PflFI GACNNNGTC 1 cut(s) 335
PflMI CCANNNNNTGG 1 cut(s) 242
PfoI TCCNGGA 1 cut(s) 427
PkrI GCNGC 3 cut(s) 367, 370, 867
PscI ACATGT 1 cut(s) 797
Psp6I CCWGG 1 cut(s) 427
PspFI CCCAGC 1 cut(s) 776
PspGI CCWGG 1 cut(s) 427
PspN4I GGNNCC 2 cut(s) 611, 631
PspPI GGNCC 1 cut(s) 454
PsuI RGATCY 1 cut(s) 345
PsyI GACNNNGTC 1 cut(s) 335
RsaI GTAC 1 cut(s) 523
RsaNI GTAC 1 cut(s) 522
RseI CAYNNNNRTG 1 cut(s) 182
SaqAI TTAA 1 cut(s) 414
SatI GCNGC 3 cut(s) 366, 369, 866
Sau3AI GATC 5 cut(s) 345, 394, 651, 736, 844
Sau96I GGNCC 1 cut(s) 454
ScrFI CCNGG 1 cut(s) 429
SduI GDGCHC 1 cut(s) 634
SetI ASST 9 cut(s) 55, 445, 459, 611, 631, 692, 701, 808, 832
SfaNI GCATC 4 cut(s) 475, 577, 682, 887
SinI GGWCC 1 cut(s) 454
SmiMI CAYNNNNRTG 1 cut(s) 182
Sse9I AATT 7 cut(s) 72, 94, 120, 315, 399, 415, 528
SsiI CCGC 5 cut(s) 45, 173, 204, 590, 634
SspMI CTAG 1 cut(s) 639
StyD4I CCNGG 1 cut(s) 427
StyI CCWWGG 1 cut(s) 690
TaaI ACNGT 1 cut(s) 356
TaqI TCGA 3 cut(s) 309, 397, 547
TaqII GACCGA 1 cut(s) 533
TasI AATT 7 cut(s) 72, 94, 120, 315, 399, 415, 528
TatI WGTACW 1 cut(s) 521
TfiI GAWTC 1 cut(s) 593
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TscAI CASTG 1 cut(s) 495
TseFI GTSAC 1 cut(s) 790
TseI GCWGC 3 cut(s) 365, 368, 865
Tsp45I GTSAC 1 cut(s) 790
TspDTI ATGAA 1 cut(s) 239
TspGWI ACGGA 2 cut(s) 244, 569
TspRI CASTG 1 cut(s) 495
Tth111I GACNNNGTC 1 cut(s) 335
Van91I CCANNNNNTGG 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 454
XagI CCTNNNNNAGG 1 cut(s) 694
XapI RAATTY 2 cut(s) 94, 528
XceI RCATGY 2 cut(s) 522, 801
XspI CTAG 1 cut(s) 639
Zsp2I ATGCAT 1 cut(s) 902
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.