Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008793

Physical Location & Seq

Genomic Coordinates Reverse (-)

10792933 .. 10795385

Gene Structure 2453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G28760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGCTTTGCCTTTGGTCTCCTCTGTTTCTTACATCAAATCCTCAAACCAATTCCATTGTTCTTTCTCTCTGAGAAAAGAAAGATTAGAACTTGATAGATTACTATTGTGGAGCTCTCATCAGAAGATAAGATTTAGTAAAAGAACGTTTTCTCAGAGAATTGTTGTGAAAATGTCTGCTTCAACTTTGCCTATGAATCTTGGCAAAGCAAAGAAGGTTTGGATATGGACTATGTGCAAAGAAGTCATGACCGTTGCGGTGGAACGAGGCTGGAACACATTTATATTCTCATCGGATAATCGAAAACTATCCAATGAGTGGTCATCTATTGCATTGATGGATACATTGTTTATTGAAGAGAAGAAAGTTATTGATGGTACGGGGAACGTTGTAGCTTCGGTCTTTGAGGTTTCAACACCCGAGGAGCTTCGGAGTTTGAATATCGAAAACGAGCAGATAGAGAATATTGTTCTTGATTTCTTAGACTGGAAGTCAATCCCAGCGGAAAATCTAGTGGCGGCTCTTCAAGGAAGTGAGAAAACAGTATTTGCAGTTTCAAATACTCCCTCAGAGGCTAAACTATTCCTAGAGGCTTTAGAGCATGGTCTCGGTGGAATCATTCTTAAATCCGAGGATGTTAAAGCTGTTCTTGATCTAAAGGAATACTTTGACAAGAGAAACGAAGAAAGTGATACATTAAGCTTAACGGAAGCTACTATAACTCGGGTTCAAATGGTCGGTATGGGAGACCGAGTCTGTGTTGATCTTTGTAGCCTAATGAGACCCGGTGAAGGTCTTCTTGTTGGATCTTTTGCTAGAGGACTCTTCTTGGTTCACTCAGAATGCTTGGAGTCTAATTACATTGAAAGCAGACCATTTAGAGTTAACGCTGGGCCGGTGCACGCTTATGTCGCTGTACCAGGTGGAAAGACGTGTTACCTCTCGGAGTTAAGGACGGGAAGAGAGGTAATTGTTGTTGATCAGAAAGGAAAACAGCGGACAGCAGTCGTTGGGCGAGTGAAAATAGAGAAGCGTCCACTTATTGTTGTGGAGGCTAAGCTTAGCACAAAGGAGGAGGAAACAGTGTATAGTATCATCTTGCAGAACGCAGAAACAGTTGCATTAGTCACTCCTCATCAAGTAAACTCATCAGGACGAACCGCTGTTCCCGTGACCTCGCTGAAACCCGGGGATCAAGTTTTGATCAGATTACAGGGCGGTGCACGCCATACCGGTATAGAGATTCAGGAATTCATTGTCGAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHQS

Protein Analysis

422

Amino Acids

47.05

Weight (kDa)

6.7

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHQS	PF01959	71 - 223	2.4e-42	3-dehydroquinate synthase II N-terminal domain
DHQS_2nd	PF26558	238 - 422	2.4e-77	3-dehydroquinate synthase II C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28760 AT3G28760
fragaria_vesca	FvH4_6g49080 FvH4_6g49080
malus_domestica	MD09G1048800.v1.1
prunus_persica	Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1
pyrus_communis	pycom111g03960
rosa_chinensis	RchiOBHm_Chr2g0168871
rosa_laevigata	RLG00000021812
rosa_multiflora	Rmu_ssc0000393.1_g000009
rosa_roxburghii	Rroxscaffold_2G00082610
rosa_rugosa	Rorug02G0535900
rosa_samantha	Rh2AG606900 Rh2BG619700 Rh2CG588300 Rh2DG630300
rosa_wichuraiana	Rw2G050320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	318
AciI	CCGC	6 cut(s)	257, 503, 518, 997, 1161, 1218
AclI	AACGTT	2 cut(s)	146, 387
AclWI	GGATC	2 cut(s)	814, 1200
AcsI	RAATTY	1 cut(s)	1250
AfaI	GTAC	2 cut(s)	379, 918
AfiI	CCNNNNNNNGG	2 cut(s)	318, 791
AflIII	ACRYGT	1 cut(s)	932
AgeI	ACCGGT	1 cut(s)	1232
AgsI	TTSAA	8 cut(s)	183, 356, 414, 439, 527, 558, 731, 866
AhdI	GACNNNNNGTC	1 cut(s)	490
AjiI	CACGTC	1 cut(s)	933
AjnI	CCWGG	1 cut(s)	919
AloI	GAACNNNNNNTCC	2 cut(s)	1150, 1182
AluBI	AGCT	7 cut(s)	114, 395, 427, 644, 702, 713, 1060
AluI	AGCT	7 cut(s)	114, 395, 427, 644, 702, 713, 1060
Alw21I	GWGCWC	3 cut(s)	116, 903, 1225
Alw26I	GTCTC	4 cut(s)	22, 611, 741, 775
Alw44I	GTGCAC	2 cut(s)	899, 1221
AlwI	GGATC	2 cut(s)	814, 1200
Ama87I	CYCGRG	3 cut(s)	419, 723, 1187
AoxI	GGCC	1 cut(s)	893
ApaLI	GTGCAC	2 cut(s)	899, 1221
ApoI	RAATTY	1 cut(s)	1250
AsiGI	ACCGGT	1 cut(s)	1232
Asp700I	GAANNNNTTC	2 cut(s)	148, 795
AspS9I	GGNCC	1 cut(s)	893
AsuC2I	CCSGG	3 cut(s)	786, 1188, 1189
AsuHPI	GGTGA	1 cut(s)	800
AvaI	CYCGRG	3 cut(s)	419, 723, 1187
BaeGI	GKGCMC	2 cut(s)	903, 1225
BanII	GRGCYC	1 cut(s)	116
BbsI	GAAGAC	1 cut(s)	788
Bbv12I	GWGCWC	3 cut(s)	116, 903, 1225
BccI	CCATC	2 cut(s)	331, 368
BciT130I	CCWGG	1 cut(s)	921
BciVI	GTATCC	1 cut(s)	334
BclI	TGATCA	2 cut(s)	979, 1203
BcnI	CCSGG	3 cut(s)	786, 1188, 1189
BcoDI	GTCTC	4 cut(s)	22, 611, 741, 775
BfaI	CTAG	3 cut(s)	512, 587, 816
BfuI	GTATCC	1 cut(s)	334
BisI	GCNGC	1 cut(s)	519
BlpI	GCTNAGC	2 cut(s)	1056, 1061
BlsI	GCNGC	1 cut(s)	520
Bme1390I	CCNGG	4 cut(s)	786, 921, 1188, 1189
BmeRI	GACNNNNNGTC	1 cut(s)	490
BmeT110I	CYCGRG	3 cut(s)	419, 723, 1187
BmgBI	CACGTC	1 cut(s)	933
BmgT120I	GGNCC	1 cut(s)	893
BmrFI	CCNGG	4 cut(s)	786, 921, 1188, 1189
BoxI	GACNNNNGTC	1 cut(s)	1004
BpiI	GAAGAC	1 cut(s)	788
Bpu1102I	GCTNAGC	2 cut(s)	1056, 1061
BpuMI	CCSGG	3 cut(s)	786, 1188, 1189
BsaI	GGTCTC	4 cut(s)	22, 611, 741, 775
BsaJI	CCNNGG	4 cut(s)	420, 630, 1187, 1188
BsaWI	WCCGGW	1 cut(s)	1232
BsaXI	ACNNNNNCTCC	2 cut(s)	738, 768
Bsc4I	CCNNNNNNNGG	2 cut(s)	318, 791
Bse118I	RCCGGY	2 cut(s)	895, 1232
Bse1I	ACTGG	1 cut(s)	491
BseBI	CCWGG	1 cut(s)	921
BseDI	CCNNGG	4 cut(s)	420, 630, 1187, 1188
BseGI	GGATG	1 cut(s)	640
BseLI	CCNNNNNNNGG	2 cut(s)	318, 791
BseMII	CTCAG	4 cut(s)	62, 167, 582, 852
BseNI	ACTGG	1 cut(s)	491
BseRI	GAGGAG	4 cut(s)	10, 437, 1088, 1122
BseSI	GKGCMC	2 cut(s)	903, 1225
BseYI	CCCAGC	2 cut(s)	499, 890
BshFI	GGCC	1 cut(s)	895
BshTI	ACCGGT	1 cut(s)	1232
BsiHKAI	GWGCWC	3 cut(s)	116, 903, 1225
BsiHKCI	CYCGRG	3 cut(s)	419, 723, 1187
BsiSI	CCGG	4 cut(s)	786, 896, 1188, 1233
BslI	CCNNNNNNNGG	2 cut(s)	318, 791
BsmAI	GTCTC	4 cut(s)	22, 611, 741, 775
BsmI	GAATGC	1 cut(s)	848
BsnI	GGCC	1 cut(s)	895
Bso31I	GGTCTC	4 cut(s)	22, 611, 741, 775
BsoBI	CYCGRG	3 cut(s)	419, 723, 1187
Bsp1286I	GDGCHC	3 cut(s)	116, 903, 1225
Bsp143I	GATC	6 cut(s)	652, 763, 806, 979, 1192, 1203
Bsp1720I	GCTNAGC	2 cut(s)	1056, 1061
BspACI	CCGC	6 cut(s)	257, 503, 518, 997, 1161, 1218
BspANI	GGCC	1 cut(s)	895
BspCNI	CTCAG	4 cut(s)	63, 166, 581, 851
BspHI	TCATGA	1 cut(s)	246
BspPI	GGATC	2 cut(s)	814, 1200
BspQI	GCTCTTC	1 cut(s)	528
BspTNI	GGTCTC	4 cut(s)	22, 611, 741, 775
BsrFI	RCCGGY	2 cut(s)	895, 1232
BsrI	ACTGG	1 cut(s)	491
BssAI	RCCGGY	2 cut(s)	895, 1232
BssECI	CCNNGG	4 cut(s)	420, 630, 1187, 1188
BssMI	GATC	6 cut(s)	652, 763, 806, 979, 1192, 1203
Bst2UI	CCWGG	1 cut(s)	921
Bst4CI	ACNGT	4 cut(s)	253, 544, 1084, 1117
Bst6I	CTCTTC	4 cut(s)	351, 528, 830, 955
BstC8I	GCNNGC	2 cut(s)	903, 1225
BstDEI	CTNAG	7 cut(s)	71, 153, 481, 568, 838, 1056, 1061
BstF5I	GGATG	1 cut(s)	640
BstKTI	GATC	6 cut(s)	655, 766, 809, 982, 1195, 1206
BstMAI	GTCTC	4 cut(s)	22, 611, 741, 775
BstMBI	GATC	6 cut(s)	652, 763, 806, 979, 1192, 1203
BstMWI	GCNNNNNNNGC	2 cut(s)	911, 1224
BstNI	CCWGG	1 cut(s)	921
BstPAI	GACNNNNGTC	1 cut(s)	1004
BstSCI	CCNGG	4 cut(s)	784, 919, 1186, 1187
BstSLI	GKGCMC	2 cut(s)	903, 1225
BstV2I	GAAGAC	1 cut(s)	788
BstX2I	RGATCY	1 cut(s)	806
BstYI	RGATCY	1 cut(s)	806
BsuI	GTATCC	1 cut(s)	334
BsuRI	GGCC	1 cut(s)	895
BtrI	CACGTC	1 cut(s)	933
BtsCI	GGATG	1 cut(s)	640
BtsIMutI	CAGTG	1 cut(s)	1089
Cac8I	GCNNGC	2 cut(s)	903, 1225
CciI	TCATGA	1 cut(s)	246
Cfr10I	RCCGGY	2 cut(s)	895, 1232
Cfr13I	GGNCC	1 cut(s)	893
Cfr9I	CCCGGG	1 cut(s)	1187
CseI	GACGC	1 cut(s)	1022
CsiI	ACCWGGT	1 cut(s)	919
Csp6I	GTAC	2 cut(s)	378, 917
CspAI	ACCGGT	1 cut(s)	1232
CviAII	CATG	2 cut(s)	247, 602
CviQI	GTAC	2 cut(s)	378, 917
DdeI	CTNAG	7 cut(s)	71, 153, 481, 568, 838, 1056, 1061
DpnI	GATC	6 cut(s)	654, 765, 808, 981, 1194, 1205
DpnII	GATC	6 cut(s)	652, 763, 806, 979, 1192, 1203
DriI	GACNNNNNGTC	1 cut(s)	490
Eam1104I	CTCTTC	4 cut(s)	351, 528, 830, 955
Eam1105I	GACNNNNNGTC	1 cut(s)	490
EarI	CTCTTC	4 cut(s)	351, 528, 830, 955
Ecl136II	GAGCTC	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	116
Eco31I	GGTCTC	4 cut(s)	22, 611, 741, 775
Eco53kI	GAGCTC	1 cut(s)	114
Eco88I	CYCGRG	3 cut(s)	419, 723, 1187
EcoICRI	GAGCTC	1 cut(s)	114
EcoRI	GAATTC	1 cut(s)	1250
EcoRII	CCWGG	1 cut(s)	919
EcoT38I	GRGCYC	1 cut(s)	116
FaeI	CATG	2 cut(s)	250, 605
FalI	AAGNNNNNCTT	6 cut(s)	633, 665, 650, 682, 783, 815
FatI	CATG	2 cut(s)	246, 601
FbaI	TGATCA	2 cut(s)	979, 1203
Fnu4HI	GCNGC	1 cut(s)	519
FokI	GGATG	1 cut(s)	647
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	519
FspBI	CTAG	3 cut(s)	512, 587, 816
GluI	GCNGC	1 cut(s)	519
GsaI	CCCAGC	2 cut(s)	503, 894
HaeIII	GGCC	1 cut(s)	895
HapII	CCGG	4 cut(s)	786, 896, 1188, 1233
HgaI	GACGC	1 cut(s)	1022
Hin1II	CATG	2 cut(s)	250, 605
HincII	GTYRAC	1 cut(s)	886
HindII	GTYRAC	1 cut(s)	886
HindIII	AAGCTT	2 cut(s)	700, 1058
HinfI	GANTC	6 cut(s)	196, 615, 753, 822, 851, 1243
HpaI	GTTAAC	1 cut(s)	886
HpaII	CCGG	4 cut(s)	786, 896, 1188, 1233
HphI	GGTGA	1 cut(s)	800
Hpy166II	GTNNAC	6 cut(s)	835, 886, 901, 1037, 1144, 1223
Hpy188III	TCNNGA	6 cut(s)	247, 473, 650, 1152, 1247, 1261
Hpy8I	GTNNAC	6 cut(s)	835, 886, 901, 1037, 1144, 1223
HpyAV	CCTTC	2 cut(s)	208, 785
HpyCH4III	ACNGT	4 cut(s)	253, 544, 1084, 1117
HpyCH4IV	ACGT	3 cut(s)	146, 387, 932
HpyCH4V	TGCA	7 cut(s)	237, 332, 551, 901, 1102, 1121, 1223
HpyF10VI	GCNNNNNNNGC	2 cut(s)	911, 1224
HpyF3I	CTNAG	7 cut(s)	71, 153, 481, 568, 838, 1056, 1061
HpySE526I	ACGT	3 cut(s)	146, 387, 932
Hsp92II	CATG	2 cut(s)	250, 605
Ksp22I	TGATCA	2 cut(s)	979, 1203
KspAI	GTTAAC	1 cut(s)	886
Kzo9I	GATC	6 cut(s)	652, 763, 806, 979, 1192, 1203
LguI	GCTCTTC	1 cut(s)	528
LmnI	GCTCC	2 cut(s)	111, 424
MabI	ACCWGGT	1 cut(s)	919
MaeI	CTAG	3 cut(s)	512, 587, 816
MaeII	ACGT	3 cut(s)	146, 387, 932
MaeIII	GTNAC	3 cut(s)	935, 1126, 1171
MalI	GATC	6 cut(s)	654, 765, 808, 981, 1194, 1205
MboI	GATC	6 cut(s)	652, 763, 806, 979, 1192, 1203
MboII	GAAGA	8 cut(s)	136, 368, 373, 515, 695, 788, 817, 972
MflI	RGATCY	1 cut(s)	806
MhlI	GDGCHC	3 cut(s)	116, 903, 1225
MluCI	AATT	5 cut(s)	50, 159, 856, 969, 1250
MlyI	GAGTC	3 cut(s)	762, 816, 860
MmeI	TCCRAC	1 cut(s)	784
MroXI	GAANNNNTTC	2 cut(s)	148, 795
MseI	TTAA	6 cut(s)	624, 639, 698, 704, 885, 950
MslI	CAYNNNNRTG	1 cut(s)	906
MspA1I	CMGCKG	3 cut(s)	503, 997, 1163
MspI	CCGG	4 cut(s)	786, 896, 1188, 1233
MspR9I	CCNGG	4 cut(s)	786, 921, 1188, 1189
Mva1269I	GAATGC	1 cut(s)	848
MvaI	CCWGG	1 cut(s)	921
MwoI	GCNNNNNNNGC	2 cut(s)	911, 1224
NciI	CCSGG	3 cut(s)	786, 1188, 1189
NdeII	GATC	6 cut(s)	652, 763, 806, 979, 1192, 1203
NlaIII	CATG	2 cut(s)	250, 605
NmuCI	GTSAC	2 cut(s)	1126, 1171
PagI	TCATGA	1 cut(s)	246
PciSI	GCTCTTC	1 cut(s)	528
PctI	GAATGC	1 cut(s)	848
PdmI	GAANNNNTTC	2 cut(s)	148, 795
PfeI	GAWTC	3 cut(s)	196, 615, 1243
PflFI	GACNNNGTC	1 cut(s)	752
PflMI	CCANNNNNTGG	1 cut(s)	318
PinAI	ACCGGT	1 cut(s)	1232
PkrI	GCNGC	1 cut(s)	520
PleI	GAGTC	3 cut(s)	761, 816, 859
PpsI	GAGTC	3 cut(s)	761, 816, 859
PshAI	GACNNNNGTC	1 cut(s)	1004
Psp124BI	GAGCTC	1 cut(s)	116
Psp1406I	AACGTT	2 cut(s)	146, 387
Psp6I	CCWGG	1 cut(s)	919
PspFI	CCCAGC	2 cut(s)	499, 890
PspGI	CCWGG	1 cut(s)	919
PspPI	GGNCC	1 cut(s)	893
PsuI	RGATCY	1 cut(s)	806
PsyI	GACNNNGTC	1 cut(s)	752
RsaI	GTAC	2 cut(s)	379, 918
RsaNI	GTAC	2 cut(s)	378, 917
RseI	CAYNNNNRTG	1 cut(s)	906
SacI	GAGCTC	1 cut(s)	116
SapI	GCTCTTC	1 cut(s)	528
SaqAI	TTAA	6 cut(s)	624, 639, 698, 704, 885, 950
SatI	GCNGC	1 cut(s)	519
Sau3AI	GATC	6 cut(s)	652, 763, 806, 979, 1192, 1203
Sau96I	GGNCC	1 cut(s)	893
SchI	GAGTC	3 cut(s)	762, 816, 860
ScrFI	CCNGG	4 cut(s)	786, 921, 1188, 1189
SduI	GDGCHC	3 cut(s)	116, 903, 1225
SexAI	ACCWGGT	1 cut(s)	919
SmaI	CCCGGG	1 cut(s)	1189
SmiMI	CAYNNNNRTG	1 cut(s)	906
Sse9I	AATT	5 cut(s)	50, 159, 856, 969, 1250
SsiI	CCGC	6 cut(s)	257, 503, 518, 997, 1161, 1218
SspI	AATATT	1 cut(s)	466
SspMI	CTAG	3 cut(s)	512, 587, 816
SstI	GAGCTC	1 cut(s)	116
StyD4I	CCNGG	4 cut(s)	784, 919, 1186, 1187
TaaI	ACNGT	4 cut(s)	253, 544, 1084, 1117
TaiI	ACGT	3 cut(s)	149, 390, 935
TaqI	TCGA	3 cut(s)	301, 444, 1260
TaqII	GACCGA	2 cut(s)	388, 765
TasI	AATT	5 cut(s)	50, 159, 856, 969, 1250
TauI	GCSGC	1 cut(s)	521
TfiI	GAWTC	3 cut(s)	196, 615, 1243
Tru1I	TTAA	6 cut(s)	624, 639, 698, 704, 885, 950
Tru9I	TTAA	6 cut(s)	624, 639, 698, 704, 885, 950
TscAI	CASTG	1 cut(s)	1089
TseFI	GTSAC	2 cut(s)	1126, 1171
Tsp45I	GTSAC	2 cut(s)	1126, 1171
TspDTI	ATGAA	2 cut(s)	209, 1243
TspGWI	ACGGA	1 cut(s)	722
TspMI	CCCGGG	1 cut(s)	1187
TspRI	CASTG	1 cut(s)	1089
Tth111I	GACNNNGTC	1 cut(s)	752
Van91I	CCANNNNNTGG	1 cut(s)	318
VneI	GTGCAC	2 cut(s)	899, 1221
XapI	RAATTY	1 cut(s)	1250
XmaI	CCCGGG	1 cut(s)	1187
XmnI	GAANNNNTTC	2 cut(s)	148, 795
XspI	CTAG	3 cut(s)	512, 587, 816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.