Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008793

Physical Location & Seq

Genomic Coordinates Reverse (-)

85977021 .. 85979970

Gene Structure 2950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG630300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGCTTGCAGATAAATGGAGTAACATTTGCAGATTGATTTCTTCACATAATAAACACCCAATGGAAACCAAGGCCACCCAGAGTTCATCAGTTGCTTCTTCTACGACGTCGTTTGGGAGCTCGAACAAGACGGTGTGGGTTTGGACGGAGAGCAAGCAGGTCATGACGGCCGCCGTGGAGAGAGGCTGGAACACCTTCGTGTTTCAGAGTCAGAAACTCGCCGATGACTGGTCTTCAATTGCGTTGATAGATCCTCTTTTGATCAAAGAGGGAGGGATTTTCGATAGCAAGAACTCGAGAGTTGCTACAGTTGTTGAGGTTTCCAATCCCAAAGAGTTGGAAGAGCTTCAACCCGAAAACGGGGTGGCTGAGAATGTTGTTGTTGATTTGCTAGATTGGCAGGTGATACCGGCGGAGAATATAGTTGCAGCATTTCAAGGGAGTCAGAAAACAGTGTTTGCCGTTTCGAAAACCCCTGTCGAAGCACAAGTCTTCTTTGAGGCTCTCGAGCATGGTCTGGGTGGAGTTGTTTTGAAAGTTGAGGATGTTCAAGCAGTTCTTGACCTAAAGGACTATTTTGACAGAAGGGACGAAGTGGGCAACATATTGAGTTTGACCAAAGCCATTGTTACTGGAGTCCAAGTAGCTGGAATGGGGGATCGGGTCTGTGTTGATCTCTGTAGTCTCATGAGACCTGGTGAAGGACTGCTTGTTGGATCATTTGCCAGAGGACTATTTCTGGTTCATTCAGAATGCTTGGAGTCAAATTACATTGCCAGCAGACCTTTCCGTGTCAATGCAGTGAGTTTGGTCCGAAAGTTTCCTGCAAATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHQS

Protein Analysis

278

Amino Acids

30.38

Weight (kDa)

5.23

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHQS	PF01959	42 - 193	3.8e-45	3-dehydroquinate synthase II N-terminal domain
DHQS_2nd	PF26558	208 - 269	9.5e-27	3-dehydroquinate synthase II C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28760 AT3G28760
fragaria_vesca	FvH4_6g49080 FvH4_6g49080
malus_domestica	MD09G1048800.v1.1
prunus_persica	Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1
pyrus_communis	pycom111g03960
rosa_chinensis	RchiOBHm_Chr2g0168871
rosa_laevigata	RLG00000021812
rosa_multiflora	Rmu_ssc0000393.1_g000009
rosa_roxburghii	Rroxscaffold_2G00082610
rosa_rugosa	Rorug02G0535900
rosa_samantha	Rh2AG606900 Rh2BG619700 Rh2CG588300 Rh2DG630300
rosa_wichuraiana	Rw2G050320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	391
AatII	GACGTC	1 cut(s)	110
Acc36I	ACCTGC	2 cut(s)	148, 391
AciI	CCGC	2 cut(s)	171, 413
AclWI	GGATC	3 cut(s)	245, 666, 724
AcoI	YGGCCR	1 cut(s)	168
AcyI	GRCGYC	1 cut(s)	107
AfiI	CCNNNNNNNGG	4 cut(s)	228, 359, 360, 701
AgsI	TTSAA	5 cut(s)	237, 350, 437, 535, 551
AjnI	CCWGG	1 cut(s)	694
AleI	CACNNNNGTG	1 cut(s)	197
AluBI	AGCT	3 cut(s)	120, 346, 647
AluI	AGCT	3 cut(s)	120, 346, 647
Alw21I	GWGCWC	1 cut(s)	122
Alw26I	GTCTC	2 cut(s)	685, 689
AlwI	GGATC	3 cut(s)	245, 666, 724
Ama87I	CYCGRG	2 cut(s)	295, 506
AoxI	GGCC	2 cut(s)	72, 168
ApeKI	GCWGC	1 cut(s)	428
ArsI	GACNNNNNNTTYG	2 cut(s)	474, 506
Asp700I	GAANNNNTTC	2 cut(s)	194, 345
AspS9I	GGNCC	1 cut(s)	811
AsuHPI	GGTGA	2 cut(s)	415, 710
AsuII	TTCGAA	1 cut(s)	467
AvaI	CYCGRG	2 cut(s)	295, 506
AvaII	GGWCC	1 cut(s)	811
BanII	GRGCYC	1 cut(s)	122
BbsI	GAAGAC	2 cut(s)	225, 484
Bbv12I	GWGCWC	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	440
BceAI	ACGGC	3 cut(s)	158, 183, 446
BciT130I	CCWGG	1 cut(s)	696
BclI	TGATCA	1 cut(s)	261
BcoDI	GTCTC	2 cut(s)	685, 689
BfaI	CTAG	1 cut(s)	392
BfmI	CTRYAG	2 cut(s)	306, 679
BfuAI	ACCTGC	2 cut(s)	148, 391
BisI	GCNGC	2 cut(s)	171, 429
BlsI	GCNGC	2 cut(s)	172, 430
Bme1390I	CCNGG	1 cut(s)	696
Bme18I	GGWCC	1 cut(s)	811
BmeT110I	CYCGRG	2 cut(s)	295, 506
BmgT120I	GGNCC	1 cut(s)	811
BmrFI	CCNGG	1 cut(s)	696
BpiI	GAAGAC	2 cut(s)	225, 484
BpmI	CTGGAG	1 cut(s)	654
Bpu14I	TTCGAA	1 cut(s)	467
BsaHI	GRCGYC	1 cut(s)	107
BsaI	GGTCTC	1 cut(s)	685
BsaJI	CCNNGG	2 cut(s)	69, 174
BsaXI	ACNNNNNCTCC	2 cut(s)	627, 657
Bsc4I	CCNNNNNNNGG	4 cut(s)	228, 359, 360, 701
Bse118I	RCCGGY	1 cut(s)	409
Bse1I	ACTGG	2 cut(s)	233, 637
Bse3DI	GCAATG	1 cut(s)	771
BseBI	CCWGG	1 cut(s)	696
BseDI	CCNNGG	2 cut(s)	69, 174
BseGI	GGATG	1 cut(s)	550
BseLI	CCNNNNNNNGG	4 cut(s)	228, 359, 360, 701
BseMI	GCAATG	1 cut(s)	771
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	2 cut(s)	233, 637
BseX3I	CGGCCG	1 cut(s)	168
BseXI	GCAGC	1 cut(s)	440
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	2 cut(s)	74, 170
BsiEI	CGRYCG	1 cut(s)	171
BsiHKAI	GWGCWC	1 cut(s)	122
BsiHKCI	CYCGRG	2 cut(s)	295, 506
BsiSI	CCGG	1 cut(s)	410
BslFI	GGGAC	1 cut(s)	602
BslI	CCNNNNNNNGG	4 cut(s)	228, 359, 360, 701
BsmAI	GTCTC	2 cut(s)	685, 689
BsmFI	GGGAC	1 cut(s)	602
BsmI	GAATGC	1 cut(s)	758
BsnI	GGCC	2 cut(s)	74, 170
Bso31I	GGTCTC	1 cut(s)	685
BsoBI	CYCGRG	2 cut(s)	295, 506
Bsp119I	TTCGAA	1 cut(s)	467
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	5 cut(s)	250, 261, 658, 673, 716
BspACI	CCGC	2 cut(s)	171, 413
BspANI	GGCC	2 cut(s)	74, 170
BspCNI	CTCAG	1 cut(s)	361
BspHI	TCATGA	2 cut(s)	162, 687
BspMI	ACCTGC	2 cut(s)	148, 391
BspPI	GGATC	3 cut(s)	245, 666, 724
BspQI	GCTCTTC	1 cut(s)	336
BspT104I	TTCGAA	1 cut(s)	467
BspTNI	GGTCTC	1 cut(s)	685
BsrDI	GCAATG	1 cut(s)	771
BsrFI	RCCGGY	1 cut(s)	409
BsrI	ACTGG	2 cut(s)	233, 637
BssAI	RCCGGY	1 cut(s)	409
BssECI	CCNNGG	2 cut(s)	69, 174
BssMI	GATC	5 cut(s)	250, 261, 658, 673, 716
BssNI	GRCGYC	1 cut(s)	107
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	696
Bst4CI	ACNGT	3 cut(s)	133, 310, 454
Bst6I	CTCTTC	1 cut(s)	336
BstACI	GRCGYC	1 cut(s)	107
BstBI	TTCGAA	1 cut(s)	467
BstC8I	GCNNGC	3 cut(s)	6, 155, 778
BstDEI	CTNAG	2 cut(s)	369, 834
BstDSI	CCRYGG	1 cut(s)	174
BstENI	CCTNNNNNAGG	1 cut(s)	699
BstF5I	GGATG	1 cut(s)	550
BstKTI	GATC	5 cut(s)	253, 264, 661, 676, 719
BstMAI	GTCTC	2 cut(s)	685, 689
BstMBI	GATC	5 cut(s)	250, 261, 658, 673, 716
BstMCI	CGRYCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	1 cut(s)	397
BstNI	CCWGG	1 cut(s)	696
BstSCI	CCNGG	1 cut(s)	694
BstSFI	CTRYAG	2 cut(s)	306, 679
BstV1I	GCAGC	1 cut(s)	440
BstV2I	GAAGAC	2 cut(s)	225, 484
BstX2I	RGATCY	1 cut(s)	250
BstXI	CCANNNNNNTGG	2 cut(s)	337, 647
BstYI	RGATCY	1 cut(s)	250
BstZI	CGGCCG	1 cut(s)	168
BsuRI	GGCC	2 cut(s)	74, 170
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	550
BtsI	GCAGTG	1 cut(s)	807
BtsIMutI	CAGTG	2 cut(s)	459, 807
BveI	ACCTGC	2 cut(s)	148, 391
Cac8I	GCNNGC	3 cut(s)	6, 155, 778
CciI	TCATGA	2 cut(s)	162, 687
Cfr10I	RCCGGY	1 cut(s)	409
Cfr13I	GGNCC	1 cut(s)	811
CsiI	ACCWGGT	1 cut(s)	694
CviAII	CATG	3 cut(s)	163, 512, 688
CviJI	RGCY	9 cut(s)	74, 120, 170, 186, 346, 368, 503, 623, 647
CviKI_1	RGCY	9 cut(s)	74, 120, 170, 186, 346, 368, 503, 623, 647
DdeI	CTNAG	2 cut(s)	369, 834
DpnI	GATC	5 cut(s)	252, 263, 660, 675, 718
DpnII	GATC	5 cut(s)	250, 261, 658, 673, 716
EaeI	YGGCCR	1 cut(s)	168
EagI	CGGCCG	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
EciI	GGCGGA	1 cut(s)	428
Ecl136II	GAGCTC	1 cut(s)	120
EclXI	CGGCCG	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	122
Eco31I	GGTCTC	1 cut(s)	685
Eco47I	GGWCC	1 cut(s)	811
Eco52I	CGGCCG	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	120
Eco88I	CYCGRG	2 cut(s)	295, 506
EcoICRI	GAGCTC	1 cut(s)	120
EcoNI	CCTNNNNNAGG	1 cut(s)	699
EcoRII	CCWGG	1 cut(s)	694
EcoT14I	CCWWGG	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	122
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	3 cut(s)	166, 515, 691
FaiI	YATR	6 cut(s)	48, 164, 422, 513, 605, 689
FalI	AAGNNNNNCTT	4 cut(s)	543, 575, 693, 725
FaqI	GGGAC	1 cut(s)	602
FatI	CATG	3 cut(s)	162, 511, 687
FbaI	TGATCA	1 cut(s)	261
Fnu4HI	GCNGC	2 cut(s)	171, 429
FokI	GGATG	1 cut(s)	557
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	2 cut(s)	171, 429
FspBI	CTAG	1 cut(s)	392
GluI	GCNGC	2 cut(s)	171, 429
GsuI	CTGGAG	1 cut(s)	654
HaeIII	GGCC	2 cut(s)	74, 170
HapII	CCGG	1 cut(s)	410
Hin1I	GRCGYC	1 cut(s)	107
Hin1II	CATG	3 cut(s)	166, 515, 691
HinfI	GANTC	4 cut(s)	208, 442, 636, 761
HpaII	CCGG	1 cut(s)	410
HphI	GGTGA	2 cut(s)	415, 710
Hpy188I	TCNGA	5 cut(s)	207, 213, 447, 751, 815
Hpy188III	TCNNGA	5 cut(s)	163, 297, 506, 560, 688
Hpy99I	CGWCG	2 cut(s)	109, 112
HpyAV	CCTTC	3 cut(s)	205, 579, 695
HpyCH4III	ACNGT	3 cut(s)	133, 310, 454
HpyCH4IV	ACGT	1 cut(s)	107
HpyCH4V	TGCA	5 cut(s)	8, 30, 428, 800, 827
HpyF10VI	GCNNNNNNNGC	1 cut(s)	397
HpyF3I	CTNAG	2 cut(s)	369, 834
HpySE526I	ACGT	1 cut(s)	107
Hsp92I	GRCGYC	1 cut(s)	107
Hsp92II	CATG	3 cut(s)	166, 515, 691
Ksp22I	TGATCA	1 cut(s)	261
Kzo9I	GATC	5 cut(s)	250, 261, 658, 673, 716
LguI	GCTCTTC	1 cut(s)	336
LmnI	GCTCC	1 cut(s)	117
Lsp1109I	GCAGC	1 cut(s)	440
MabI	ACCWGGT	1 cut(s)	694
MaeI	CTAG	1 cut(s)	392
MaeII	ACGT	1 cut(s)	107
MaeIII	GTNAC	2 cut(s)	20, 628
MalI	GATC	5 cut(s)	252, 263, 660, 675, 718
MboI	GATC	5 cut(s)	250, 261, 658, 673, 716
MboII	GAAGA	5 cut(s)	33, 90, 225, 353, 484
MfeI	CAATTG	1 cut(s)	237
MflI	RGATCY	1 cut(s)	250
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	2 cut(s)	237, 766
MlyI	GAGTC	4 cut(s)	217, 451, 645, 770
MmeI	TCCRAC	2 cut(s)	318, 694
MnlI	CCTC	8 cut(s)	176, 262, 264, 266, 310, 493, 535, 722
MroXI	GAANNNNTTC	2 cut(s)	194, 345
MslI	CAYNNNNRTG	1 cut(s)	197
MspI	CCGG	1 cut(s)	410
MspR9I	CCNGG	1 cut(s)	696
MunI	CAATTG	1 cut(s)	237
Mva1269I	GAATGC	1 cut(s)	758
MvaI	CCWGG	1 cut(s)	696
MwoI	GCNNNNNNNGC	1 cut(s)	397
NdeII	GATC	5 cut(s)	250, 261, 658, 673, 716
NlaIII	CATG	3 cut(s)	166, 515, 691
NspV	TTCGAA	1 cut(s)	467
OliI	CACNNNNGTG	1 cut(s)	197
PaeR7I	CTCGAG	2 cut(s)	295, 506
PagI	TCATGA	2 cut(s)	162, 687
PaqCI	CACCTGC	1 cut(s)	391
PciSI	GCTCTTC	1 cut(s)	336
PctI	GAATGC	1 cut(s)	758
PdmI	GAANNNNTTC	2 cut(s)	194, 345
PkrI	GCNGC	2 cut(s)	172, 430
PleI	GAGTC	4 cut(s)	216, 450, 644, 769
PpsI	GAGTC	4 cut(s)	216, 450, 644, 769
Psp124BI	GAGCTC	1 cut(s)	122
Psp6I	CCWGG	1 cut(s)	694
PspGI	CCWGG	1 cut(s)	694
PspPI	GGNCC	1 cut(s)	811
PsuI	RGATCY	1 cut(s)	250
RseI	CAYNNNNRTG	1 cut(s)	197
SacI	GAGCTC	1 cut(s)	122
SapI	GCTCTTC	1 cut(s)	336
SatI	GCNGC	2 cut(s)	171, 429
Sau3AI	GATC	5 cut(s)	250, 261, 658, 673, 716
Sau96I	GGNCC	1 cut(s)	811
SchI	GAGTC	4 cut(s)	217, 451, 645, 770
ScrFI	CCNGG	1 cut(s)	696
SduI	GDGCHC	1 cut(s)	122
SexAI	ACCWGGT	1 cut(s)	694
SfcI	CTRYAG	2 cut(s)	306, 679
Sfr274I	CTCGAG	2 cut(s)	295, 506
SfuI	TTCGAA	1 cut(s)	467
SinI	GGWCC	1 cut(s)	811
SlaI	CTCGAG	2 cut(s)	295, 506
SmiMI	CAYNNNNRTG	1 cut(s)	197
SmlI	CTYRAG	2 cut(s)	295, 506
SmoI	CTYRAG	2 cut(s)	295, 506
Sse9I	AATT	2 cut(s)	237, 766
SsiI	CCGC	2 cut(s)	171, 413
SspMI	CTAG	1 cut(s)	392
SstI	GAGCTC	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	694
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	3 cut(s)	133, 310, 454
TaiI	ACGT	1 cut(s)	110
TaqI	TCGA	6 cut(s)	122, 282, 296, 467, 480, 507
TasI	AATT	2 cut(s)	237, 766
TauI	GCSGC	1 cut(s)	173
TscAI	CASTG	2 cut(s)	459, 807
TseI	GCWGC	1 cut(s)	428
TspDTI	ATGAA	2 cut(s)	75, 734
TspGWI	ACGGA	2 cut(s)	161, 779
TspRI	CASTG	2 cut(s)	459, 807
VpaK11BI	GGWCC	1 cut(s)	811
XagI	CCTNNNNNAGG	1 cut(s)	699
XhoI	CTCGAG	2 cut(s)	295, 506
XmnI	GAANNNNTTC	2 cut(s)	194, 345
XspI	CTAG	1 cut(s)	392
ZraI	GACGTC	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.