Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008793

Physical Location & Seq

Genomic Coordinates Reverse (-)

25155695 .. 25159462

Gene Structure 3768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G270100.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGCCGTGCTGCATTCTGCTTGTGTTGCCGGAATCCGCTGCTTCACTCCTACTACAGATACATGGAACACTTGCAGATTGATTAGTTCACATAAATACTCAATGGAAGCTAGTAATGGTATTAAGGAAATCCAATTGGCCCAGAAGTCTTCTTCTGCAAGTATTGGTCTTGGTTCCTCTACGCCGTCGTCTTCGGGGACGTCCGGCAAGTCGAAGAGGGTGTGGGTGTGGACGGAGAGCAAGCAGGTCATGACGGCTTCTGTGGAGAGAGGCTGGAACACCTTCATCTTCTCTTCTCGAAGTCGTGAACTTGCCGATGAGTGGTCCTCAATTGCTTTGATACATCCTCTCTTTATCCAAGAGGGAGCGATTTTTGATGGCGAGAACAGAAGTGTTGCCACAATTCTTGAGGTCTCCAATCCCCAGGAGTTAGAGCAGCTTCAGCCGGATAAAGGGTTGGGGGAAAATGTTGTTGTTGATTTACTAGATTGGCAGGTCATACCTGCAGAGAATATAGTTGCAGCATTTCAAGGGAGTGAAAAAACAGTGTTTGCCATCTCGAAAACCCCTTTGGAAGCACAAGTCTTCTTTGAGGCCCTCGAGCAAGGTCTGGGTGGAGTTGTTTTAAAAGTTGAGGATGTAAAAGCTATTCTTGACTTAAAGGATTATTTTGACAGACGAGATGAAGTGAGCAACATATTGAGCTTGACCAAAGCCACTGTAACTTCAGTACAAGTAGCTGGAATGGGGGATCGAGTTTGTGTTGATCTCTGTAGTCTCATGAGACCTGGGGAAGGACTGCTTGTTGGATCCTTTGCCAGGGGACTATTCCTCGTTCATTCGGAATGCTTGGAGTCCAATTACATTGCGAGCAGGCCTTTTCGTGTCAACGCGGGACCTGTACATGCCTATGTTGCTGTTCCAGGAGGAAAAACGTGCTACCTCTCAGAGTTGAAATCAGGTAAAGAGGTGATTCTGGTTGATCAGAAAGGCCATCAACGAACAGCGATTGTTGGGCGTGTGAAAATAGAAACTAGACCGCTAATCCTTGTGGAGGCAAAGCTCCAGAGAGATTCAGTTAATCAAACTCTATACAGCATCCTTGTACAGAATGCGGAAACAGTGGCCTTAGTTTGTCCCAGCAAAGGAATTGAAGTGCAAAAAACTGCCATTCCTGTGACTTCACTTAAAGTTGGAGATGAAATTTTAGTTAGATTACAGGGAGGGGCTCGGCATACGGGAATTGAAATTCAAGAATTCATTGTGGAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHQS

Protein Analysis

425

Amino Acids

46.13

Weight (kDa)

5.91

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28760 AT3G28760
fragaria_vesca	FvH4_6g49080 FvH4_6g49080
malus_domestica	MD09G1048800.v1.1
prunus_persica	Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1
pyrus_communis	pycom111g03960
rosa_chinensis	RchiOBHm_Chr2g0168871
rosa_laevigata	RLG00000021812
rosa_multiflora	Rmu_ssc0000393.1_g000009
rosa_roxburghii	Rroxscaffold_2G00082610
rosa_rugosa	Rorug02G0535900
rosa_samantha	Rh2AG606900 Rh2BG619700 Rh2CG588300 Rh2DG630300
rosa_wichuraiana	Rw2G050320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	203
Acc36I	ACCTGC	3 cut(s)	235, 484, 511
AccII	CGCG	1 cut(s)	893
AciI	CCGC	4 cut(s)	37, 893, 1040, 1115
AclWI	GGATC	3 cut(s)	759, 804, 817
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	1203, 1248, 1256
AcuI	CTGAAG	2 cut(s)	425, 711
AcyI	GRCGYC	1 cut(s)	200
AfaI	GTAC	3 cut(s)	732, 903, 1107
AfiI	CCNNNNNNNGG	6 cut(s)	321, 452, 794, 819, 1054, 1145
AgsI	TTSAA	5 cut(s)	530, 955, 1154, 1247, 1253
AjnI	CCWGG	4 cut(s)	423, 787, 818, 922
AjuI	GAANNNNNNNTTGG	2 cut(s)	554, 586
AluBI	AGCT	6 cut(s)	110, 439, 647, 705, 740, 1063
AluI	AGCT	6 cut(s)	110, 439, 647, 705, 740, 1063
Alw26I	GTCTC	3 cut(s)	418, 778, 782
AlwI	GGATC	3 cut(s)	759, 804, 817
Ama87I	CYCGRG	1 cut(s)	599
AoxI	GGCC	6 cut(s)	3, 138, 594, 875, 991, 1125
ApeKI	GCWGC	4 cut(s)	10, 39, 436, 521
ApoI	RAATTY	3 cut(s)	1203, 1248, 1256
Asp700I	GAANNNNTTC	1 cut(s)	281
AspS9I	GGNCC	4 cut(s)	139, 324, 595, 896
AsuHPI	GGTGA	1 cut(s)	982
AvaI	CYCGRG	1 cut(s)	599
AvaII	GGWCC	2 cut(s)	324, 896
BamHI	GGATCC	1 cut(s)	809
BanII	GRGCYC	1 cut(s)	1231
BbsI	GAAGAC	3 cut(s)	141, 183, 577
BbvI	GCAGC	3 cut(s)	26, 448, 533
BccI	CCATC	3 cut(s)	371, 563, 1002
BceAI	ACGGC	2 cut(s)	169, 270
BciT130I	CCWGG	4 cut(s)	425, 789, 820, 924
BclI	TGATCA	1 cut(s)	982
BcoDI	GTCTC	3 cut(s)	418, 778, 782
BfaI	CTAG	3 cut(s)	111, 485, 1035
BfmI	CTRYAG	3 cut(s)	54, 504, 772
BfuAI	ACCTGC	3 cut(s)	235, 484, 511
BisI	GCNGC	4 cut(s)	11, 40, 437, 522
BlsI	GCNGC	4 cut(s)	12, 41, 438, 523
Bme1390I	CCNGG	4 cut(s)	425, 789, 820, 924
Bme18I	GGWCC	2 cut(s)	324, 896
BmeT110I	CYCGRG	1 cut(s)	599
BmgT120I	GGNCC	4 cut(s)	139, 324, 595, 896
BmiI	GGNNCC	3 cut(s)	175, 811, 897
BmrFI	CCNGG	4 cut(s)	425, 789, 820, 924
BmsI	GCATC	1 cut(s)	1107
BpiI	GAAGAC	3 cut(s)	141, 183, 577
BplI	GAGNNNNNCTC	2 cut(s)	311, 343
BpmI	CTGGAG	1 cut(s)	1049
BpuEI	CTTGAG	1 cut(s)	428
BsaHI	GRCGYC	1 cut(s)	200
BsaI	GGTCTC	2 cut(s)	418, 778
BsaJI	CCNNGG	3 cut(s)	423, 788, 819
Bsc4I	CCNNNNNNNGG	6 cut(s)	321, 452, 794, 819, 1054, 1145
Bse3DI	GCAATG	1 cut(s)	864
BseBI	CCWGG	4 cut(s)	425, 789, 820, 924
BseDI	CCNNGG	3 cut(s)	423, 788, 819
BseGI	GGATG	3 cut(s)	343, 643, 1098
BseLI	CCNNNNNNNGG	6 cut(s)	321, 452, 794, 819, 1054, 1145
BseMI	GCAATG	1 cut(s)	864
BseMII	CTCAG	1 cut(s)	960
BseXI	GCAGC	3 cut(s)	26, 448, 533
BseYI	CCCAGC	1 cut(s)	1139
Bsh1236I	CGCG	1 cut(s)	893
BshFI	GGCC	6 cut(s)	5, 140, 596, 877, 993, 1127
BsiHKCI	CYCGRG	1 cut(s)	599
BsiSI	CCGG	3 cut(s)	30, 204, 446
BslFI	GGGAC	4 cut(s)	211, 837, 909, 1122
BslI	CCNNNNNNNGG	6 cut(s)	321, 452, 794, 819, 1054, 1145
BsmAI	GTCTC	3 cut(s)	418, 778, 782
BsmFI	GGGAC	4 cut(s)	211, 837, 909, 1122
BsmI	GAATGC	3 cut(s)	13, 851, 1117
BsnI	GGCC	6 cut(s)	5, 140, 596, 877, 993, 1127
Bso31I	GGTCTC	2 cut(s)	418, 778
BsoBI	CYCGRG	1 cut(s)	599
Bsp1286I	GDGCHC	1 cut(s)	1231
Bsp1407I	TGTACA	2 cut(s)	901, 1105
Bsp143I	GATC	4 cut(s)	751, 766, 809, 982
BspACI	CCGC	4 cut(s)	37, 893, 1040, 1115
BspANI	GGCC	6 cut(s)	5, 140, 596, 877, 993, 1127
BspCNI	CTCAG	1 cut(s)	959
BspFNI	CGCG	1 cut(s)	893
BspHI	TCATGA	2 cut(s)	249, 780
BspLI	GGNNCC	3 cut(s)	175, 811, 897
BspMAI	CTGCAG	1 cut(s)	508
BspMI	ACCTGC	3 cut(s)	235, 484, 511
BspPI	GGATC	3 cut(s)	759, 804, 817
BspTNI	GGTCTC	2 cut(s)	418, 778
BsrDI	GCAATG	1 cut(s)	864
BsrGI	TGTACA	2 cut(s)	901, 1105
BssECI	CCNNGG	3 cut(s)	423, 788, 819
BssMI	GATC	4 cut(s)	751, 766, 809, 982
BssNI	GRCGYC	1 cut(s)	200
Bst2UI	CCWGG	4 cut(s)	425, 789, 820, 924
Bst4CI	ACNGT	3 cut(s)	547, 721, 1123
Bst6I	CTCTTC	2 cut(s)	209, 298
BstACI	GRCGYC	1 cut(s)	200
BstAUI	TGTACA	2 cut(s)	901, 1105
BstC8I	GCNNGC	3 cut(s)	242, 871, 875
BstDEI	CTNAG	2 cut(s)	946, 1129
BstENI	CCTNNNNNAGG	3 cut(s)	792, 817, 1052
BstF5I	GGATG	3 cut(s)	343, 643, 1098
BstFNI	CGCG	1 cut(s)	893
BstKTI	GATC	4 cut(s)	754, 769, 812, 985
BstMAI	GTCTC	3 cut(s)	418, 778, 782
BstMBI	GATC	4 cut(s)	751, 766, 809, 982
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 442, 914
BstNI	CCWGG	4 cut(s)	425, 789, 820, 924
BstNSI	RCATGY	1 cut(s)	908
BstSCI	CCNGG	4 cut(s)	423, 787, 818, 922
BstSFI	CTRYAG	3 cut(s)	54, 504, 772
BstUI	CGCG	1 cut(s)	893
BstV1I	GCAGC	3 cut(s)	26, 448, 533
BstV2I	GAAGAC	3 cut(s)	141, 183, 577
BstX2I	RGATCY	1 cut(s)	809
BstYI	RGATCY	1 cut(s)	809
BsuRI	GGCC	6 cut(s)	5, 140, 596, 877, 993, 1127
BtsCI	GGATG	3 cut(s)	343, 643, 1098
BtsIMutI	CAGTG	3 cut(s)	552, 717, 1128
BveI	ACCTGC	3 cut(s)	235, 484, 511
Cac8I	GCNNGC	3 cut(s)	242, 871, 875
CciI	TCATGA	2 cut(s)	249, 780
Cfr13I	GGNCC	4 cut(s)	139, 324, 595, 896
Csp6I	GTAC	3 cut(s)	731, 902, 1106
CspCI	CAANNNNNGTGG	2 cut(s)	388, 423
CviAII	CATG	4 cut(s)	63, 250, 781, 905
CviQI	GTAC	3 cut(s)	731, 902, 1106
DdeI	CTNAG	2 cut(s)	946, 1129
DpnI	GATC	4 cut(s)	753, 768, 811, 984
DpnII	GATC	4 cut(s)	751, 766, 809, 982
DraI	TTTAAA	1 cut(s)	627
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	209, 298
EarI	CTCTTC	2 cut(s)	209, 298
Eco147I	AGGCCT	1 cut(s)	877
Eco24I	GRGCYC	1 cut(s)	1231
Eco31I	GGTCTC	2 cut(s)	418, 778
Eco47I	GGWCC	2 cut(s)	324, 896
Eco57I	CTGAAG	2 cut(s)	425, 711
Eco88I	CYCGRG	1 cut(s)	599
EcoNI	CCTNNNNNAGG	3 cut(s)	792, 817, 1052
EcoO109I	RGGNCCY	2 cut(s)	595, 896
EcoRI	GAATTC	1 cut(s)	1256
EcoRII	CCWGG	4 cut(s)	423, 787, 818, 922
EcoT38I	GRGCYC	1 cut(s)	1231
FaeI	CATG	4 cut(s)	66, 253, 784, 908
FalI	AAGNNNNNCTT	4 cut(s)	636, 668, 786, 818
FaqI	GGGAC	4 cut(s)	211, 837, 909, 1122
FatI	CATG	4 cut(s)	62, 249, 780, 904
FauI	CCCGC	1 cut(s)	886
FbaI	TGATCA	1 cut(s)	982
Fnu4HI	GCNGC	4 cut(s)	11, 40, 437, 522
FokI	GGATG	3 cut(s)	330, 650, 1085
FriOI	GRGCYC	1 cut(s)	1231
Fsp4HI	GCNGC	4 cut(s)	11, 40, 437, 522
FspBI	CTAG	3 cut(s)	111, 485, 1035
GluI	GCNGC	4 cut(s)	11, 40, 437, 522
GsaI	CCCAGC	1 cut(s)	1143
GsuI	CTGGAG	1 cut(s)	1049
HaeIII	GGCC	6 cut(s)	5, 140, 596, 877, 993, 1127
HapII	CCGG	3 cut(s)	30, 204, 446
Hin1I	GRCGYC	1 cut(s)	200
Hin1II	CATG	4 cut(s)	66, 253, 784, 908
HincII	GTYRAC	1 cut(s)	889
HindII	GTYRAC	1 cut(s)	889
HinfI	GANTC	4 cut(s)	33, 854, 973, 1073
HpaII	CCGG	3 cut(s)	30, 204, 446
HphI	GGTGA	1 cut(s)	982
Hpy166II	GTNNAC	4 cut(s)	89, 231, 308, 889
Hpy188I	TCNGA	3 cut(s)	844, 949, 987
Hpy188III	TCNNGA	9 cut(s)	250, 297, 305, 407, 559, 653, 781, 1066, 1253
Hpy8I	GTNNAC	4 cut(s)	89, 231, 308, 889
Hpy99I	CGWCG	1 cut(s)	190
HpyAV	CCTTC	2 cut(s)	292, 788
HpyCH4III	ACNGT	3 cut(s)	547, 721, 1123
HpyCH4IV	ACGT	2 cut(s)	200, 935
HpyCH4V	TGCA	6 cut(s)	13, 75, 158, 506, 521, 1159
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 442, 914
HpyF3I	CTNAG	2 cut(s)	946, 1129
HpySE526I	ACGT	2 cut(s)	200, 935
Hsp92I	GRCGYC	1 cut(s)	200
Hsp92II	CATG	4 cut(s)	66, 253, 784, 908
Ksp22I	TGATCA	1 cut(s)	982
Kzo9I	GATC	4 cut(s)	751, 766, 809, 982
LmnI	GCTCC	2 cut(s)	365, 1068
Lsp1109I	GCAGC	3 cut(s)	26, 448, 533
LweI	GCATC	1 cut(s)	1107
MaeI	CTAG	3 cut(s)	111, 485, 1035
MaeII	ACGT	2 cut(s)	200, 935
MaeIII	GTNAC	2 cut(s)	721, 1177
MalI	GATC	4 cut(s)	753, 768, 811, 984
MboI	GATC	4 cut(s)	751, 766, 809, 982
MboII	GAAGA	7 cut(s)	141, 144, 183, 226, 280, 285, 577
MfeI	CAATTG	2 cut(s)	134, 330
MflI	RGATCY	1 cut(s)	809
MhlI	GDGCHC	1 cut(s)	1231
MluCI	AATT	9 cut(s)	134, 330, 402, 859, 1149, 1203, 1242, 1248, 1256
MlyI	GAGTC	1 cut(s)	863
MmeI	TCCRAC	2 cut(s)	787, 1174
MroXI	GAANNNNTTC	1 cut(s)	281
MseI	TTAA	5 cut(s)	123, 626, 659, 1080, 1188
MslI	CAYNNNNRTG	2 cut(s)	909, 1175
MspA1I	CMGCKG	1 cut(s)	39
MspI	CCGG	3 cut(s)	30, 204, 446
MspR9I	CCNGG	4 cut(s)	425, 789, 820, 924
MunI	CAATTG	2 cut(s)	134, 330
Mva1269I	GAATGC	3 cut(s)	13, 851, 1117
MvaI	CCWGG	4 cut(s)	425, 789, 820, 924
MvnI	CGCG	1 cut(s)	893
MwoI	GCNNNNNNNGC	3 cut(s)	26, 442, 914
NdeII	GATC	4 cut(s)	751, 766, 809, 982
NlaIII	CATG	4 cut(s)	66, 253, 784, 908
NlaIV	GGNNCC	3 cut(s)	175, 811, 897
NmeAIII	GCCGAG	1 cut(s)	1210
NmuCI	GTSAC	1 cut(s)	1177
NspI	RCATGY	1 cut(s)	908
PaeR7I	CTCGAG	1 cut(s)	599
PagI	TCATGA	2 cut(s)	249, 780
PceI	AGGCCT	1 cut(s)	877
PctI	GAATGC	3 cut(s)	13, 851, 1117
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	3 cut(s)	33, 973, 1073
PfoI	TCCNGGA	1 cut(s)	922
PkrI	GCNGC	4 cut(s)	12, 41, 438, 523
PleI	GAGTC	1 cut(s)	862
PpsI	GAGTC	1 cut(s)	862
PpuMI	RGGWCCY	1 cut(s)	896
Psp5II	RGGWCCY	1 cut(s)	896
Psp6I	CCWGG	4 cut(s)	423, 787, 818, 922
PspFI	CCCAGC	1 cut(s)	1139
PspGI	CCWGG	4 cut(s)	423, 787, 818, 922
PspN4I	GGNNCC	3 cut(s)	175, 811, 897
PspPI	GGNCC	4 cut(s)	139, 324, 595, 896
PspPPI	RGGWCCY	1 cut(s)	896
PspXI	VCTCGAGB	1 cut(s)	599
PstI	CTGCAG	1 cut(s)	508
PsuI	RGATCY	1 cut(s)	809
RsaI	GTAC	3 cut(s)	732, 903, 1107
RsaNI	GTAC	3 cut(s)	731, 902, 1106
RseI	CAYNNNNRTG	2 cut(s)	909, 1175
SaqAI	TTAA	5 cut(s)	123, 626, 659, 1080, 1188
SatI	GCNGC	4 cut(s)	11, 40, 437, 522
Sau3AI	GATC	4 cut(s)	751, 766, 809, 982
Sau96I	GGNCC	4 cut(s)	139, 324, 595, 896
SchI	GAGTC	1 cut(s)	863
ScrFI	CCNGG	4 cut(s)	425, 789, 820, 924
SduI	GDGCHC	1 cut(s)	1231
SfaNI	GCATC	1 cut(s)	1107
SfcI	CTRYAG	3 cut(s)	54, 504, 772
Sfr274I	CTCGAG	1 cut(s)	599
SinI	GGWCC	2 cut(s)	324, 896
SlaI	CTCGAG	1 cut(s)	599
SmiMI	CAYNNNNRTG	2 cut(s)	909, 1175
SmlI	CTYRAG	2 cut(s)	407, 599
SmoI	CTYRAG	2 cut(s)	407, 599
Sse9I	AATT	9 cut(s)	134, 330, 402, 859, 1149, 1203, 1242, 1248, 1256
SseBI	AGGCCT	1 cut(s)	877
SsiI	CCGC	4 cut(s)	37, 893, 1040, 1115
SspMI	CTAG	3 cut(s)	111, 485, 1035
StuI	AGGCCT	1 cut(s)	877
StyD4I	CCNGG	4 cut(s)	423, 787, 818, 922
TaaI	ACNGT	3 cut(s)	547, 721, 1123
TaiI	ACGT	2 cut(s)	203, 938
TaqI	TCGA	5 cut(s)	212, 298, 560, 600, 754
TasI	AATT	9 cut(s)	134, 330, 402, 859, 1149, 1203, 1242, 1248, 1256
TatI	WGTACW	3 cut(s)	730, 901, 1105
TfiI	GAWTC	3 cut(s)	33, 973, 1073
Tru1I	TTAA	5 cut(s)	123, 626, 659, 1080, 1188
Tru9I	TTAA	5 cut(s)	123, 626, 659, 1080, 1188
TscAI	CASTG	3 cut(s)	552, 724, 1128
TseFI	GTSAC	1 cut(s)	1177
TseI	GCWGC	4 cut(s)	10, 39, 436, 521
Tsp45I	GTSAC	1 cut(s)	1177
TspDTI	ATGAA	5 cut(s)	274, 699, 827, 1215, 1249
TspGWI	ACGGA	1 cut(s)	248
TspRI	CASTG	3 cut(s)	552, 724, 1128
VpaK11BI	GGWCC	2 cut(s)	324, 896
XagI	CCTNNNNNAGG	3 cut(s)	792, 817, 1052
XapI	RAATTY	3 cut(s)	1203, 1248, 1256
XceI	RCATGY	1 cut(s)	908
XhoI	CTCGAG	1 cut(s)	599
XmnI	GAANNNNTTC	1 cut(s)	281
XspI	CTAG	3 cut(s)	111, 485, 1035
ZraI	GACGTC	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.