3-dehydroquinate
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G28760 AT3G28760 |
| fragaria_vesca | FvH4_6g49080 FvH4_6g49080 |
| malus_domestica | MD09G1048800.v1.1 |
| prunus_persica | Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1 |
| pyrus_communis | pycom111g03960 |
| rosa_chinensis | RchiOBHm_Chr2g0168871 |
| rosa_laevigata | RLG00000021812 |
| rosa_multiflora | Rmu_ssc0000393.1_g000009 |
| rosa_roxburghii | Rroxscaffold_2G00082610 |
| rosa_rugosa | Rorug02G0535900 |
| rosa_samantha | Rh2AG606900 Rh2BG619700 Rh2CG588300 Rh2DG630300 |
| rosa_wichuraiana | Rw2G050320 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 445 |
| Acc36I | ACCTGC | 2 cut(s) | 202, 445 |
| AciI | CCGC | 3 cut(s) | 43, 129, 225 |
| AclWI | GGATC | 3 cut(s) | 299, 720, 778 |
| AcoI | YGGCCR | 2 cut(s) | 33, 222 |
| AcsI | RAATTY | 2 cut(s) | 1203, 1211 |
| AfaI | GTAC | 2 cut(s) | 864, 1062 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 282, 413, 414, 755, 1015, 1192 |
| AflIII | ACRYGT | 2 cut(s) | 657, 979 |
| AgsI | TTSAA | 8 cut(s) | 291, 404, 491, 589, 605, 916, 1202, 1208 |
| AjiI | CACGTC | 1 cut(s) | 980 |
| AjnI | CCWGG | 2 cut(s) | 748, 883 |
| AleI | CACNNNNGTG | 1 cut(s) | 251 |
| AluBI | AGCT | 4 cut(s) | 174, 400, 701, 900 |
| AluI | AGCT | 4 cut(s) | 174, 400, 701, 900 |
| Alw21I | GWGCWC | 1 cut(s) | 176 |
| Alw26I | GTCTC | 6 cut(s) | 15, 523, 739, 743, 986, 991 |
| AlwI | GGATC | 3 cut(s) | 299, 720, 778 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 13, 860 |
| Ama87I | CYCGRG | 1 cut(s) | 349 |
| AoxI | GGCC | 3 cut(s) | 33, 126, 222 |
| ApeKI | GCWGC | 3 cut(s) | 16, 45, 482 |
| ApoI | RAATTY | 2 cut(s) | 1203, 1211 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 516, 528, 548, 560 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 248, 399 |
| AspS9I | GGNCC | 1 cut(s) | 857 |
| AsuC2I | CCSGG | 1 cut(s) | 1186 |
| AsuHPI | GGTGA | 3 cut(s) | 469, 764, 943 |
| AvaI | CYCGRG | 1 cut(s) | 349 |
| AvaII | GGWCC | 1 cut(s) | 857 |
| BanII | GRGCYC | 2 cut(s) | 176, 1186 |
| BbsI | GAAGAC | 3 cut(s) | 188, 279, 538 |
| Bbv12I | GWGCWC | 1 cut(s) | 176 |
| BbvI | GCAGC | 3 cut(s) | 3, 32, 494 |
| BceAI | ACGGC | 3 cut(s) | 212, 237, 500 |
| BciT130I | CCWGG | 2 cut(s) | 750, 885 |
| BclI | TGATCA | 3 cut(s) | 315, 943, 1036 |
| BcnI | CCSGG | 1 cut(s) | 1186 |
| BcoDI | GTCTC | 6 cut(s) | 15, 523, 739, 743, 986, 991 |
| BfmI | CTRYAG | 2 cut(s) | 733, 1048 |
| BfuAI | ACCTGC | 2 cut(s) | 202, 445 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 32 |
| BisI | GCNGC | 5 cut(s) | 17, 46, 129, 225, 483 |
| BlsI | GCNGC | 5 cut(s) | 18, 47, 130, 226, 484 |
| Bme1390I | CCNGG | 3 cut(s) | 750, 885, 1186 |
| Bme18I | GGWCC | 1 cut(s) | 857 |
| BmeT110I | CYCGRG | 1 cut(s) | 349 |
| BmgBI | CACGTC | 1 cut(s) | 980 |
| BmgT120I | GGNCC | 1 cut(s) | 857 |
| BmiI | GGNNCC | 1 cut(s) | 1183 |
| BmrFI | CCNGG | 3 cut(s) | 750, 885, 1186 |
| BpiI | GAAGAC | 3 cut(s) | 188, 279, 538 |
| BpmI | CTGGAG | 1 cut(s) | 708 |
| BpuEI | CTTGAG | 1 cut(s) | 581 |
| BpuMI | CCSGG | 1 cut(s) | 1186 |
| BsaI | GGTCTC | 2 cut(s) | 739, 991 |
| BsaJI | CCNNGG | 2 cut(s) | 123, 228 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 681, 711 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 282, 413, 414, 755, 1015, 1192 |
| Bse118I | RCCGGY | 1 cut(s) | 463 |
| Bse1I | ACTGG | 2 cut(s) | 287, 691 |
| BseBI | CCWGG | 2 cut(s) | 750, 885 |
| BseDI | CCNNGG | 2 cut(s) | 123, 228 |
| BseGI | GGATG | 2 cut(s) | 604, 1039 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 282, 413, 414, 755, 1015, 1192 |
| BseMII | CTCAG | 4 cut(s) | 20, 414, 921, 1180 |
| BseNI | ACTGG | 2 cut(s) | 287, 691 |
| BseRI | GAGGAG | 1 cut(s) | 1194 |
| BseX3I | CGGCCG | 1 cut(s) | 222 |
| BseXI | GCAGC | 3 cut(s) | 3, 32, 494 |
| Bsh1285I | CGRYCG | 1 cut(s) | 225 |
| BshFI | GGCC | 3 cut(s) | 35, 128, 224 |
| BsiEI | CGRYCG | 1 cut(s) | 225 |
| BsiHKAI | GWGCWC | 1 cut(s) | 176 |
| BsiHKCI | CYCGRG | 1 cut(s) | 349 |
| BsiSI | CCGG | 3 cut(s) | 36, 464, 1186 |
| BslFI | GGGAC | 2 cut(s) | 656, 1077 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 282, 413, 414, 755, 1015, 1192 |
| BsmAI | GTCTC | 6 cut(s) | 15, 523, 739, 743, 986, 991 |
| BsmBI | CGTCTC | 2 cut(s) | 523, 986 |
| BsmFI | GGGAC | 2 cut(s) | 656, 1077 |
| BsmI | GAATGC | 1 cut(s) | 812 |
| BsnI | GGCC | 3 cut(s) | 35, 128, 224 |
| Bso31I | GGTCTC | 2 cut(s) | 739, 991 |
| BsoBI | CYCGRG | 1 cut(s) | 349 |
| Bsp1286I | GDGCHC | 2 cut(s) | 176, 1186 |
| Bsp1407I | TGTACA | 2 cut(s) | 862, 1060 |
| Bsp143I | GATC | 7 cut(s) | 304, 315, 712, 727, 770, 943, 1036 |
| BspACI | CCGC | 3 cut(s) | 43, 129, 225 |
| BspANI | GGCC | 3 cut(s) | 35, 128, 224 |
| BspCNI | CTCAG | 4 cut(s) | 19, 415, 920, 1179 |
| BspHI | TCATGA | 2 cut(s) | 216, 741 |
| BspLI | GGNNCC | 1 cut(s) | 1183 |
| BspMI | ACCTGC | 2 cut(s) | 202, 445 |
| BspPI | GGATC | 3 cut(s) | 299, 720, 778 |
| BspQI | GCTCTTC | 1 cut(s) | 390 |
| BspTNI | GGTCTC | 2 cut(s) | 739, 991 |
| BsrFI | RCCGGY | 1 cut(s) | 463 |
| BsrGI | TGTACA | 2 cut(s) | 862, 1060 |
| BsrI | ACTGG | 2 cut(s) | 287, 691 |
| BssAI | RCCGGY | 1 cut(s) | 463 |
| BssECI | CCNNGG | 2 cut(s) | 123, 228 |
| BssMI | GATC | 7 cut(s) | 304, 315, 712, 727, 770, 943, 1036 |
| BssT1I | CCWWGG | 1 cut(s) | 123 |
| Bst2UI | CCWGG | 2 cut(s) | 750, 885 |
| Bst4CI | ACNGT | 5 cut(s) | 187, 364, 508, 1052, 1078 |
| Bst6I | CTCTTC | 1 cut(s) | 390 |
| BstAUI | TGTACA | 2 cut(s) | 862, 1060 |
| BstC8I | GCNNGC | 2 cut(s) | 209, 832 |
| BstDEI | CTNAG | 5 cut(s) | 6, 423, 907, 1084, 1166 |
| BstDSI | CCRYGG | 1 cut(s) | 228 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 753, 1013 |
| BstF5I | GGATG | 2 cut(s) | 604, 1039 |
| BstKTI | GATC | 7 cut(s) | 307, 318, 715, 730, 773, 946, 1039 |
| BstMAI | GTCTC | 6 cut(s) | 15, 523, 739, 743, 986, 991 |
| BstMBI | GATC | 7 cut(s) | 304, 315, 712, 727, 770, 943, 1036 |
| BstMCI | CGRYCG | 1 cut(s) | 225 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 32, 451, 875 |
| BstNI | CCWGG | 2 cut(s) | 750, 885 |
| BstNSI | RCATGY | 2 cut(s) | 661, 869 |
| BstSCI | CCNGG | 3 cut(s) | 748, 883, 1184 |
| BstSFI | CTRYAG | 2 cut(s) | 733, 1048 |
| BstV1I | GCAGC | 3 cut(s) | 3, 32, 494 |
| BstV2I | GAAGAC | 3 cut(s) | 188, 279, 538 |
| BstX2I | RGATCY | 1 cut(s) | 304 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 391, 701 |
| BstYI | RGATCY | 1 cut(s) | 304 |
| BstZI | CGGCCG | 1 cut(s) | 222 |
| BsuRI | GGCC | 3 cut(s) | 35, 128, 224 |
| BtgI | CCRYGG | 1 cut(s) | 228 |
| BtgZI | GCGATG | 1 cut(s) | 811 |
| BtrI | CACGTC | 1 cut(s) | 980 |
| BtsCI | GGATG | 2 cut(s) | 604, 1039 |
| BveI | ACCTGC | 2 cut(s) | 202, 445 |
| Cac8I | GCNNGC | 2 cut(s) | 209, 832 |
| CaiI | CAGNNNCTG | 2 cut(s) | 13, 860 |
| CciI | TCATGA | 2 cut(s) | 216, 741 |
| Cfr10I | RCCGGY | 1 cut(s) | 463 |
| Cfr13I | GGNCC | 1 cut(s) | 857 |
| CsiI | ACCWGGT | 1 cut(s) | 748 |
| Csp6I | GTAC | 2 cut(s) | 863, 1061 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 349, 384 |
| CviAII | CATG | 5 cut(s) | 217, 566, 658, 742, 866 |
| CviQI | GTAC | 2 cut(s) | 863, 1061 |
| DdeI | CTNAG | 5 cut(s) | 6, 423, 907, 1084, 1166 |
| DpnI | GATC | 7 cut(s) | 306, 317, 714, 729, 772, 945, 1038 |
| DpnII | GATC | 7 cut(s) | 304, 315, 712, 727, 770, 943, 1036 |
| EaeI | YGGCCR | 2 cut(s) | 33, 222 |
| EagI | CGGCCG | 1 cut(s) | 222 |
| Eam1104I | CTCTTC | 1 cut(s) | 390 |
| EarI | CTCTTC | 1 cut(s) | 390 |
| Ecl136II | GAGCTC | 1 cut(s) | 174 |
| EclXI | CGGCCG | 1 cut(s) | 222 |
| Eco130I | CCWWGG | 1 cut(s) | 123 |
| Eco24I | GRGCYC | 2 cut(s) | 176, 1186 |
| Eco31I | GGTCTC | 2 cut(s) | 739, 991 |
| Eco47I | GGWCC | 1 cut(s) | 857 |
| Eco52I | CGGCCG | 1 cut(s) | 222 |
| Eco53kI | GAGCTC | 1 cut(s) | 174 |
| Eco88I | CYCGRG | 1 cut(s) | 349 |
| EcoICRI | GAGCTC | 1 cut(s) | 174 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 753, 1013 |
| EcoO109I | RGGNCCY | 1 cut(s) | 857 |
| EcoRI | GAATTC | 1 cut(s) | 1211 |
| EcoRII | CCWGG | 2 cut(s) | 748, 883 |
| EcoT14I | CCWWGG | 1 cut(s) | 123 |
| EcoT38I | GRGCYC | 2 cut(s) | 176, 1186 |
| ErhI | CCWWGG | 1 cut(s) | 123 |
| Esp3I | CGTCTC | 2 cut(s) | 523, 986 |
| FaeI | CATG | 5 cut(s) | 220, 569, 661, 745, 869 |
| FaiI | YATR | 9 cut(s) | 102, 218, 567, 659, 743, 867, 873, 1163, 1191 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 597, 629, 747, 779 |
| FaqI | GGGAC | 2 cut(s) | 656, 1077 |
| FatI | CATG | 5 cut(s) | 216, 565, 657, 741, 865 |
| FbaI | TGATCA | 3 cut(s) | 315, 943, 1036 |
| Fnu4HI | GCNGC | 5 cut(s) | 17, 46, 129, 225, 483 |
| FokI | GGATG | 2 cut(s) | 611, 1046 |
| FriOI | GRGCYC | 2 cut(s) | 176, 1186 |
| Fsp4HI | GCNGC | 5 cut(s) | 17, 46, 129, 225, 483 |
| GluI | GCNGC | 5 cut(s) | 17, 46, 129, 225, 483 |
| GsuI | CTGGAG | 1 cut(s) | 708 |
| HaeIII | GGCC | 3 cut(s) | 35, 128, 224 |
| HapII | CCGG | 3 cut(s) | 36, 464, 1186 |
| Hin1II | CATG | 5 cut(s) | 220, 569, 661, 745, 869 |
| HinfI | GANTC | 7 cut(s) | 39, 262, 496, 690, 815, 934, 1028 |
| HpaII | CCGG | 3 cut(s) | 36, 464, 1186 |
| HphI | GGTGA | 3 cut(s) | 469, 764, 943 |
| Hpy188I | TCNGA | 9 cut(s) | 261, 267, 501, 805, 910, 948, 1033, 1151, 1169 |
| Hpy188III | TCNNGA | 6 cut(s) | 217, 351, 560, 614, 742, 1208 |
| HpyAV | CCTTC | 3 cut(s) | 259, 633, 749 |
| HpyCH4III | ACNGT | 5 cut(s) | 187, 364, 508, 1052, 1078 |
| HpyCH4IV | ACGT | 1 cut(s) | 979 |
| HpyCH4V | TGCA | 6 cut(s) | 19, 84, 482, 854, 1070, 1124 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 32, 451, 875 |
| HpyF3I | CTNAG | 5 cut(s) | 6, 423, 907, 1084, 1166 |
| HpySE526I | ACGT | 1 cut(s) | 979 |
| Hsp92II | CATG | 5 cut(s) | 220, 569, 661, 745, 869 |
| Ksp22I | TGATCA | 3 cut(s) | 315, 943, 1036 |
| Kzo9I | GATC | 7 cut(s) | 304, 315, 712, 727, 770, 943, 1036 |
| LguI | GCTCTTC | 1 cut(s) | 390 |
| LmnI | GCTCC | 2 cut(s) | 171, 1181 |
| Lsp1109I | GCAGC | 3 cut(s) | 3, 32, 494 |
| MabI | ACCWGGT | 1 cut(s) | 748 |
| MaeII | ACGT | 1 cut(s) | 979 |
| MaeIII | GTNAC | 3 cut(s) | 74, 682, 1132 |
| MalI | GATC | 7 cut(s) | 306, 317, 714, 729, 772, 945, 1038 |
| MboI | GATC | 7 cut(s) | 304, 315, 712, 727, 770, 943, 1036 |
| MboII | GAAGA | 7 cut(s) | 87, 144, 190, 193, 279, 407, 538 |
| MfeI | CAATTG | 2 cut(s) | 291, 969 |
| MflI | RGATCY | 1 cut(s) | 304 |
| MhlI | GDGCHC | 2 cut(s) | 176, 1186 |
| MluCI | AATT | 7 cut(s) | 291, 820, 969, 1158, 1197, 1203, 1211 |
| MlyI | GAGTC | 4 cut(s) | 271, 505, 699, 824 |
| MmeI | TCCRAC | 4 cut(s) | 372, 748, 955, 1129 |
| MroXI | GAANNNNTTC | 2 cut(s) | 248, 399 |
| MseI | TTAA | 1 cut(s) | 1143 |
| MslI | CAYNNNNRTG | 2 cut(s) | 251, 870 |
| MspA1I | CMGCKG | 1 cut(s) | 45 |
| MspI | CCGG | 3 cut(s) | 36, 464, 1186 |
| MspR9I | CCNGG | 3 cut(s) | 750, 885, 1186 |
| MunI | CAATTG | 2 cut(s) | 291, 969 |
| Mva1269I | GAATGC | 1 cut(s) | 812 |
| MvaI | CCWGG | 2 cut(s) | 750, 885 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 32, 451, 875 |
| NciI | CCSGG | 1 cut(s) | 1186 |
| NdeII | GATC | 7 cut(s) | 304, 315, 712, 727, 770, 943, 1036 |
| NlaIII | CATG | 5 cut(s) | 220, 569, 661, 745, 869 |
| NlaIV | GGNNCC | 1 cut(s) | 1183 |
| NmuCI | GTSAC | 1 cut(s) | 1132 |
| NspI | RCATGY | 2 cut(s) | 661, 869 |
| OliI | CACNNNNGTG | 1 cut(s) | 251 |
| PaeR7I | CTCGAG | 1 cut(s) | 349 |
| PagI | TCATGA | 2 cut(s) | 216, 741 |
| PaqCI | CACCTGC | 1 cut(s) | 445 |
| PciI | ACATGT | 1 cut(s) | 657 |
| PciSI | GCTCTTC | 1 cut(s) | 390 |
| PctI | GAATGC | 1 cut(s) | 812 |
| PdmI | GAANNNNTTC | 2 cut(s) | 248, 399 |
| PfeI | GAWTC | 3 cut(s) | 39, 934, 1028 |
| PfoI | TCCNGGA | 1 cut(s) | 883 |
| PkrI | GCNGC | 5 cut(s) | 18, 47, 130, 226, 484 |
| PleI | GAGTC | 4 cut(s) | 270, 504, 698, 823 |
| PpsI | GAGTC | 4 cut(s) | 270, 504, 698, 823 |
| PpuMI | RGGWCCY | 1 cut(s) | 857 |
| PscI | ACATGT | 1 cut(s) | 657 |
| Psp124BI | GAGCTC | 1 cut(s) | 176 |
| Psp5II | RGGWCCY | 1 cut(s) | 857 |
| Psp6I | CCWGG | 2 cut(s) | 748, 883 |
| PspGI | CCWGG | 2 cut(s) | 748, 883 |
| PspN4I | GGNNCC | 1 cut(s) | 1183 |
| PspPI | GGNCC | 1 cut(s) | 857 |
| PspPPI | RGGWCCY | 1 cut(s) | 857 |
| PstNI | CAGNNNCTG | 2 cut(s) | 13, 860 |
| PsuI | RGATCY | 1 cut(s) | 304 |
| RsaI | GTAC | 2 cut(s) | 864, 1062 |
| RsaNI | GTAC | 2 cut(s) | 863, 1061 |
| RseI | CAYNNNNRTG | 2 cut(s) | 251, 870 |
| SacI | GAGCTC | 1 cut(s) | 176 |
| SapI | GCTCTTC | 1 cut(s) | 390 |
| SaqAI | TTAA | 1 cut(s) | 1143 |
| SatI | GCNGC | 5 cut(s) | 17, 46, 129, 225, 483 |
| Sau3AI | GATC | 7 cut(s) | 304, 315, 712, 727, 770, 943, 1036 |
| Sau96I | GGNCC | 1 cut(s) | 857 |
| SchI | GAGTC | 4 cut(s) | 271, 505, 699, 824 |
| ScrFI | CCNGG | 3 cut(s) | 750, 885, 1186 |
| SduI | GDGCHC | 2 cut(s) | 176, 1186 |
| SexAI | ACCWGGT | 1 cut(s) | 748 |
| SfcI | CTRYAG | 2 cut(s) | 733, 1048 |
| Sfr274I | CTCGAG | 1 cut(s) | 349 |
| SinI | GGWCC | 1 cut(s) | 857 |
| SlaI | CTCGAG | 1 cut(s) | 349 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 251, 870 |
| SmlI | CTYRAG | 2 cut(s) | 349, 560 |
| SmoI | CTYRAG | 2 cut(s) | 349, 560 |
| Sse9I | AATT | 7 cut(s) | 291, 820, 969, 1158, 1197, 1203, 1211 |
| SsiI | CCGC | 3 cut(s) | 43, 129, 225 |
| SstI | GAGCTC | 1 cut(s) | 176 |
| StyD4I | CCNGG | 3 cut(s) | 748, 883, 1184 |
| StyI | CCWWGG | 1 cut(s) | 123 |
| TaaI | ACNGT | 5 cut(s) | 187, 364, 508, 1052, 1078 |
| TaiI | ACGT | 1 cut(s) | 982 |
| TaqI | TCGA | 4 cut(s) | 176, 336, 350, 534 |
| TasI | AATT | 7 cut(s) | 291, 820, 969, 1158, 1197, 1203, 1211 |
| TatI | WGTACW | 2 cut(s) | 862, 1060 |
| TauI | GCSGC | 2 cut(s) | 131, 227 |
| TfiI | GAWTC | 3 cut(s) | 39, 934, 1028 |
| Tru1I | TTAA | 1 cut(s) | 1143 |
| Tru9I | TTAA | 1 cut(s) | 1143 |
| TseFI | GTSAC | 1 cut(s) | 1132 |
| TseI | GCWGC | 3 cut(s) | 16, 45, 482 |
| Tsp45I | GTSAC | 1 cut(s) | 1132 |
| TspDTI | ATGAA | 4 cut(s) | 129, 788, 1170, 1204 |
| TspGWI | ACGGA | 2 cut(s) | 215, 833 |
| VpaK11BI | GGWCC | 1 cut(s) | 857 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 753, 1013 |
| XapI | RAATTY | 2 cut(s) | 1203, 1211 |
| XceI | RCATGY | 2 cut(s) | 661, 869 |
| XhoI | CTCGAG | 1 cut(s) | 349 |
| XmnI | GAANNNNTTC | 2 cut(s) | 248, 399 |