RchiOBHm_Chr2g0168871

3-dehydroquinate

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
83193198 .. 83196230
3033 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53650

Sequence Viewer

Length: 1230 bp
ATGGCTCAGTCTCTGCTGCACTCTGCCTCTTTGGCCGGAATCCGCTGCTCCACTCCCCCCTCAGATAAATGGAGTAACATTTGCAGATTGATTTCTTCACATAATAAACACCCAATGGAAACCAAGGCCACCCAGAGTTCATCAGTTGCTTCTTCTACGACGTCGTTTGGGAGCTCGAACAAGACGGTGTGGGTTTGGACGGAGAGCAAGCAGGTCATGACGGCCGCCGTGGAGAGAGGCTGGAACACCTTCGTGTTTCAGAGTCAGAAACTCGCCGATGACTGGTCTTCAATTGCGTTGATAGATCCTCTTTTGATCAAAGAGGGAGGGATTTTCGATAGCAAGAACTCGAGAGTTGCTACAGTTGTTGAGGTTTCCAATCCCAAAGAGTTGGAAGAGCTTCAACCCGAAAACGGGGTGGCTGAGAATGTTGTTGTTGATTTGCTAGATTGGCAGGTGATACCGGCGGAGAATATAGTTGCAGTATTTCAAGGGAGTCAGAAAACAGTGTTTGCCATCTCAAAAACCCCTGTCGAAGCACAAGTCTTCTTTGAGGCTCTCGAGCATGGTCTGGGTGGAGTTGTTTTGAAAGTTGAGGATGTTCAAGCAGTTCTTGACCTAAAGGACTATTTTGACAGAAGGGACGAAGTGGGCAACATATTGAGTTTGACCAAAGCCATTGTTACTGGAGTCCAAGTAGCTGGAATGGGGGATCGGGTCTGTGTTGATCTCTGTAGTCTCATGAGACCTGGTGAAGGACTGCTTGTTGGATCATTTGCCAGAGGACTATTTCTGGTTCATTCAGAATGCTTGGAGTCAAATTACATTGCCAGCAGACCTTTCCGTGTCAATGCGGGACCTGTACATGCCTATGTTGCTGTTCCAGGAGGAAAAACAAGCTACCTCTCAGAGTTGAAAGCAGGAAAAGAGGTGATTCTGGTTGATCAGAAAGGTCATCAACGAACAGCAATTGTTGGACGTGTAAAGATAGAGACGAGACCACTAATCCTTGTGGAGGCAAAGAGGGATTCGGATGATCAAACAATCTACAGTATTCTTGTACAAAATGCAGAAACAGTTGCCTTAGTTTGTCCCAAAAAAGAAAATGGAGGGCAAAAAACTGCAATCCCTGTGACTTCACTTAAAGTCGGAGATAAAATTATGCTCAGATTACAGGGAGGAGCCCGGCATACAGGAATTGAAATTCAAGAATTCATTGTGGAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

409

Amino Acids

44.47

Weight (kDa)

6.12

Isoelectric Point (pI)

36.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHQS PF01959 60 - 211 3.9e-44 3-dehydroquinate synthase II N-terminal domain
DHQS_2nd PF26558 226 - 409 4.2e-76 3-dehydroquinate synthase II C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 445
AatII GACGTC 1 cut(s) 164
Acc36I ACCTGC 2 cut(s) 202, 445
AciI CCGC 4 cut(s) 43, 225, 467, 854
AclWI GGATC 3 cut(s) 299, 720, 778
AcoI YGGCCR 2 cut(s) 33, 222
AcsI RAATTY 2 cut(s) 1203, 1211
AcyI GRCGYC 1 cut(s) 161
AfaI GTAC 2 cut(s) 864, 1062
AfiI CCNNNNNNNGG 5 cut(s) 282, 413, 414, 755, 1015
AflIII ACRYGT 1 cut(s) 979
AgsI TTSAA 8 cut(s) 291, 404, 491, 589, 605, 916, 1202, 1208
AjiI CACGTC 1 cut(s) 980
AjnI CCWGG 2 cut(s) 748, 883
AleI CACNNNNGTG 1 cut(s) 251
AluBI AGCT 4 cut(s) 174, 400, 701, 900
AluI AGCT 4 cut(s) 174, 400, 701, 900
Alw21I GWGCWC 1 cut(s) 176
Alw26I GTCTC 5 cut(s) 15, 739, 743, 986, 991
AlwI GGATC 3 cut(s) 299, 720, 778
AlwNI CAGNNNCTG 1 cut(s) 13
Ama87I CYCGRG 2 cut(s) 349, 560
AoxI GGCC 3 cut(s) 33, 126, 222
ApeKI GCWGC 2 cut(s) 16, 45
ApoI RAATTY 2 cut(s) 1203, 1211
ArsI GACNNNNNNTTYG 2 cut(s) 528, 560
Asp700I GAANNNNTTC 2 cut(s) 248, 399
AspS9I GGNCC 1 cut(s) 857
AsuC2I CCSGG 1 cut(s) 1186
AsuHPI GGTGA 3 cut(s) 469, 764, 943
AvaI CYCGRG 2 cut(s) 349, 560
AvaII GGWCC 1 cut(s) 857
BanII GRGCYC 2 cut(s) 176, 1186
BbsI GAAGAC 2 cut(s) 279, 538
Bbv12I GWGCWC 1 cut(s) 176
BbvI GCAGC 2 cut(s) 3, 32
BccI CCATC 1 cut(s) 524
BceAI ACGGC 2 cut(s) 212, 237
BciT130I CCWGG 2 cut(s) 750, 885
BclI TGATCA 3 cut(s) 315, 943, 1036
BcnI CCSGG 1 cut(s) 1186
BcoDI GTCTC 5 cut(s) 15, 739, 743, 986, 991
BfaI CTAG 1 cut(s) 446
BfmI CTRYAG 3 cut(s) 360, 733, 1048
BfuAI ACCTGC 2 cut(s) 202, 445
BglI GCCNNNNNGGC 1 cut(s) 32
BisI GCNGC 3 cut(s) 17, 46, 225
BlsI GCNGC 3 cut(s) 18, 47, 226
Bme1390I CCNGG 3 cut(s) 750, 885, 1186
Bme18I GGWCC 1 cut(s) 857
BmeT110I CYCGRG 2 cut(s) 349, 560
BmgBI CACGTC 1 cut(s) 980
BmgT120I GGNCC 1 cut(s) 857
BmiI GGNNCC 2 cut(s) 858, 1183
BmrFI CCNGG 3 cut(s) 750, 885, 1186
BpiI GAAGAC 2 cut(s) 279, 538
BpmI CTGGAG 1 cut(s) 708
BpuMI CCSGG 1 cut(s) 1186
BsaHI GRCGYC 1 cut(s) 161
BsaI GGTCTC 2 cut(s) 739, 991
BsaJI CCNNGG 2 cut(s) 123, 228
BsaXI ACNNNNNCTCC 2 cut(s) 681, 711
Bsc4I CCNNNNNNNGG 5 cut(s) 282, 413, 414, 755, 1015
Bse118I RCCGGY 1 cut(s) 463
Bse1I ACTGG 2 cut(s) 287, 691
Bse3DI GCAATG 1 cut(s) 825
BseBI CCWGG 2 cut(s) 750, 885
BseDI CCNNGG 2 cut(s) 123, 228
BseGI GGATG 2 cut(s) 604, 1039
BseLI CCNNNNNNNGG 5 cut(s) 282, 413, 414, 755, 1015
BseMI GCAATG 1 cut(s) 825
BseMII CTCAG 5 cut(s) 20, 75, 414, 921, 1180
BseNI ACTGG 2 cut(s) 287, 691
BseRI GAGGAG 1 cut(s) 1194
BseX3I CGGCCG 1 cut(s) 222
BseXI GCAGC 2 cut(s) 3, 32
Bsh1285I CGRYCG 1 cut(s) 225
BshFI GGCC 3 cut(s) 35, 128, 224
BsiEI CGRYCG 1 cut(s) 225
BsiHKAI GWGCWC 1 cut(s) 176
BsiHKCI CYCGRG 2 cut(s) 349, 560
BsiSI CCGG 3 cut(s) 36, 464, 1186
BslFI GGGAC 3 cut(s) 656, 870, 1077
BslI CCNNNNNNNGG 5 cut(s) 282, 413, 414, 755, 1015
BsmAI GTCTC 5 cut(s) 15, 739, 743, 986, 991
BsmBI CGTCTC 1 cut(s) 986
BsmFI GGGAC 3 cut(s) 656, 870, 1077
BsmI GAATGC 1 cut(s) 812
BsnI GGCC 3 cut(s) 35, 128, 224
Bso31I GGTCTC 2 cut(s) 739, 991
BsoBI CYCGRG 2 cut(s) 349, 560
Bsp1286I GDGCHC 2 cut(s) 176, 1186
Bsp1407I TGTACA 2 cut(s) 862, 1060
Bsp143I GATC 7 cut(s) 304, 315, 712, 727, 770, 943, 1036
BspACI CCGC 4 cut(s) 43, 225, 467, 854
BspANI GGCC 3 cut(s) 35, 128, 224
BspCNI CTCAG 5 cut(s) 19, 74, 415, 920, 1179
BspHI TCATGA 2 cut(s) 216, 741
BspLI GGNNCC 2 cut(s) 858, 1183
BspMI ACCTGC 2 cut(s) 202, 445
BspPI GGATC 3 cut(s) 299, 720, 778
BspQI GCTCTTC 1 cut(s) 390
BspTNI GGTCTC 2 cut(s) 739, 991
BsrDI GCAATG 1 cut(s) 825
BsrFI RCCGGY 1 cut(s) 463
BsrGI TGTACA 2 cut(s) 862, 1060
BsrI ACTGG 2 cut(s) 287, 691
BssAI RCCGGY 1 cut(s) 463
BssECI CCNNGG 2 cut(s) 123, 228
BssMI GATC 7 cut(s) 304, 315, 712, 727, 770, 943, 1036
BssNI GRCGYC 1 cut(s) 161
BssT1I CCWWGG 1 cut(s) 123
Bst2UI CCWGG 2 cut(s) 750, 885
Bst4CI ACNGT 5 cut(s) 187, 364, 508, 1052, 1078
Bst6I CTCTTC 1 cut(s) 390
BstACI GRCGYC 1 cut(s) 161
BstAUI TGTACA 2 cut(s) 862, 1060
BstC8I GCNNGC 2 cut(s) 209, 832
BstDEI CTNAG 6 cut(s) 6, 61, 423, 907, 1084, 1166
BstDSI CCRYGG 1 cut(s) 228
BstENI CCTNNNNNAGG 2 cut(s) 753, 1013
BstF5I GGATG 2 cut(s) 604, 1039
BstKTI GATC 7 cut(s) 307, 318, 715, 730, 773, 946, 1039
BstMAI GTCTC 5 cut(s) 15, 739, 743, 986, 991
BstMBI GATC 7 cut(s) 304, 315, 712, 727, 770, 943, 1036
BstMCI CGRYCG 1 cut(s) 225
BstMWI GCNNNNNNNGC 3 cut(s) 32, 451, 875
BstNI CCWGG 2 cut(s) 750, 885
BstNSI RCATGY 1 cut(s) 869
BstSCI CCNGG 3 cut(s) 748, 883, 1184
BstSFI CTRYAG 3 cut(s) 360, 733, 1048
BstV1I GCAGC 2 cut(s) 3, 32
BstV2I GAAGAC 2 cut(s) 279, 538
BstX2I RGATCY 1 cut(s) 304
BstXI CCANNNNNNTGG 2 cut(s) 391, 701
BstYI RGATCY 1 cut(s) 304
BstZI CGGCCG 1 cut(s) 222
BsuRI GGCC 3 cut(s) 35, 128, 224
BtgI CCRYGG 1 cut(s) 228
BtrI CACGTC 1 cut(s) 980
BtsCI GGATG 2 cut(s) 604, 1039
BtsIMutI CAGTG 1 cut(s) 513
BveI ACCTGC 2 cut(s) 202, 445
Cac8I GCNNGC 2 cut(s) 209, 832
CaiI CAGNNNCTG 1 cut(s) 13
CciI TCATGA 2 cut(s) 216, 741
Cfr10I RCCGGY 1 cut(s) 463
Cfr13I GGNCC 1 cut(s) 857
CsiI ACCWGGT 1 cut(s) 748
Csp6I GTAC 2 cut(s) 863, 1061
CviAII CATG 4 cut(s) 217, 566, 742, 866
CviQI GTAC 2 cut(s) 863, 1061
DdeI CTNAG 6 cut(s) 6, 61, 423, 907, 1084, 1166
DpnI GATC 7 cut(s) 306, 317, 714, 729, 772, 945, 1038
DpnII GATC 7 cut(s) 304, 315, 712, 727, 770, 943, 1036
EaeI YGGCCR 2 cut(s) 33, 222
EagI CGGCCG 1 cut(s) 222
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
EciI GGCGGA 1 cut(s) 482
Ecl136II GAGCTC 1 cut(s) 174
EclXI CGGCCG 1 cut(s) 222
Eco130I CCWWGG 1 cut(s) 123
Eco24I GRGCYC 2 cut(s) 176, 1186
Eco31I GGTCTC 2 cut(s) 739, 991
Eco47I GGWCC 1 cut(s) 857
Eco52I CGGCCG 1 cut(s) 222
Eco53kI GAGCTC 1 cut(s) 174
Eco88I CYCGRG 2 cut(s) 349, 560
EcoICRI GAGCTC 1 cut(s) 174
EcoNI CCTNNNNNAGG 2 cut(s) 753, 1013
EcoO109I RGGNCCY 1 cut(s) 857
EcoRI GAATTC 1 cut(s) 1211
EcoRII CCWGG 2 cut(s) 748, 883
EcoT14I CCWWGG 1 cut(s) 123
EcoT38I GRGCYC 2 cut(s) 176, 1186
ErhI CCWWGG 1 cut(s) 123
Esp3I CGTCTC 1 cut(s) 986
FaeI CATG 4 cut(s) 220, 569, 745, 869
FalI AAGNNNNNCTT 4 cut(s) 597, 629, 747, 779
FaqI GGGAC 3 cut(s) 656, 870, 1077
FatI CATG 4 cut(s) 216, 565, 741, 865
FauI CCCGC 1 cut(s) 847
FbaI TGATCA 3 cut(s) 315, 943, 1036
Fnu4HI GCNGC 3 cut(s) 17, 46, 225
FokI GGATG 2 cut(s) 611, 1046
FriOI GRGCYC 2 cut(s) 176, 1186
Fsp4HI GCNGC 3 cut(s) 17, 46, 225
FspBI CTAG 1 cut(s) 446
GluI GCNGC 3 cut(s) 17, 46, 225
GsuI CTGGAG 1 cut(s) 708
HaeIII GGCC 3 cut(s) 35, 128, 224
HapII CCGG 3 cut(s) 36, 464, 1186
Hin1I GRCGYC 1 cut(s) 161
Hin1II CATG 4 cut(s) 220, 569, 745, 869
HinfI GANTC 7 cut(s) 39, 262, 496, 690, 815, 934, 1028
HpaII CCGG 3 cut(s) 36, 464, 1186
HphI GGTGA 3 cut(s) 469, 764, 943
Hpy188III TCNNGA 6 cut(s) 217, 351, 560, 614, 742, 1208
Hpy99I CGWCG 2 cut(s) 163, 166
HpyAV CCTTC 3 cut(s) 259, 633, 749
HpyCH4III ACNGT 5 cut(s) 187, 364, 508, 1052, 1078
HpyCH4IV ACGT 2 cut(s) 161, 979
HpyCH4V TGCA 5 cut(s) 19, 84, 482, 1070, 1124
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 451, 875
HpyF3I CTNAG 6 cut(s) 6, 61, 423, 907, 1084, 1166
HpySE526I ACGT 2 cut(s) 161, 979
Hsp92I GRCGYC 1 cut(s) 161
Hsp92II CATG 4 cut(s) 220, 569, 745, 869
Ksp22I TGATCA 3 cut(s) 315, 943, 1036
Kzo9I GATC 7 cut(s) 304, 315, 712, 727, 770, 943, 1036
LguI GCTCTTC 1 cut(s) 390
LmnI GCTCC 3 cut(s) 53, 171, 1181
Lsp1109I GCAGC 2 cut(s) 3, 32
MabI ACCWGGT 1 cut(s) 748
MaeI CTAG 1 cut(s) 446
MaeII ACGT 2 cut(s) 161, 979
MaeIII GTNAC 3 cut(s) 74, 682, 1132
MalI GATC 7 cut(s) 306, 317, 714, 729, 772, 945, 1038
MboI GATC 7 cut(s) 304, 315, 712, 727, 770, 943, 1036
MboII GAAGA 5 cut(s) 87, 144, 279, 407, 538
MfeI CAATTG 2 cut(s) 291, 969
MflI RGATCY 1 cut(s) 304
MhlI GDGCHC 2 cut(s) 176, 1186
MluCI AATT 7 cut(s) 291, 820, 969, 1158, 1197, 1203, 1211
MlyI GAGTC 4 cut(s) 271, 505, 699, 824
MmeI TCCRAC 4 cut(s) 372, 748, 955, 1129
MroXI GAANNNNTTC 2 cut(s) 248, 399
MseI TTAA 1 cut(s) 1143
MslI CAYNNNNRTG 2 cut(s) 251, 870
MspA1I CMGCKG 1 cut(s) 45
MspI CCGG 3 cut(s) 36, 464, 1186
MspR9I CCNGG 3 cut(s) 750, 885, 1186
MunI CAATTG 2 cut(s) 291, 969
Mva1269I GAATGC 1 cut(s) 812
MvaI CCWGG 2 cut(s) 750, 885
MwoI GCNNNNNNNGC 3 cut(s) 32, 451, 875
NciI CCSGG 1 cut(s) 1186
NdeII GATC 7 cut(s) 304, 315, 712, 727, 770, 943, 1036
NlaIII CATG 4 cut(s) 220, 569, 745, 869
NlaIV GGNNCC 2 cut(s) 858, 1183
NmuCI GTSAC 1 cut(s) 1132
NspI RCATGY 1 cut(s) 869
OliI CACNNNNGTG 1 cut(s) 251
PaeR7I CTCGAG 2 cut(s) 349, 560
PagI TCATGA 2 cut(s) 216, 741
PaqCI CACCTGC 1 cut(s) 445
PciSI GCTCTTC 1 cut(s) 390
PctI GAATGC 1 cut(s) 812
PdmI GAANNNNTTC 2 cut(s) 248, 399
PfeI GAWTC 3 cut(s) 39, 934, 1028
PfoI TCCNGGA 1 cut(s) 883
PkrI GCNGC 3 cut(s) 18, 47, 226
PleI GAGTC 4 cut(s) 270, 504, 698, 823
PpsI GAGTC 4 cut(s) 270, 504, 698, 823
PpuMI RGGWCCY 1 cut(s) 857
Psp124BI GAGCTC 1 cut(s) 176
Psp5II RGGWCCY 1 cut(s) 857
Psp6I CCWGG 2 cut(s) 748, 883
PspGI CCWGG 2 cut(s) 748, 883
PspN4I GGNNCC 2 cut(s) 858, 1183
PspPI GGNCC 1 cut(s) 857
PspPPI RGGWCCY 1 cut(s) 857
PstNI CAGNNNCTG 1 cut(s) 13
PsuI RGATCY 1 cut(s) 304
RsaI GTAC 2 cut(s) 864, 1062
RsaNI GTAC 2 cut(s) 863, 1061
RseI CAYNNNNRTG 2 cut(s) 251, 870
SacI GAGCTC 1 cut(s) 176
SapI GCTCTTC 1 cut(s) 390
SaqAI TTAA 1 cut(s) 1143
SatI GCNGC 3 cut(s) 17, 46, 225
Sau3AI GATC 7 cut(s) 304, 315, 712, 727, 770, 943, 1036
Sau96I GGNCC 1 cut(s) 857
SchI GAGTC 4 cut(s) 271, 505, 699, 824
ScrFI CCNGG 3 cut(s) 750, 885, 1186
SduI GDGCHC 2 cut(s) 176, 1186
SexAI ACCWGGT 1 cut(s) 748
SfcI CTRYAG 3 cut(s) 360, 733, 1048
Sfr274I CTCGAG 2 cut(s) 349, 560
SinI GGWCC 1 cut(s) 857
SlaI CTCGAG 2 cut(s) 349, 560
SmiMI CAYNNNNRTG 2 cut(s) 251, 870
SmlI CTYRAG 2 cut(s) 349, 560
SmoI CTYRAG 2 cut(s) 349, 560
Sse9I AATT 7 cut(s) 291, 820, 969, 1158, 1197, 1203, 1211
SsiI CCGC 4 cut(s) 43, 225, 467, 854
SspMI CTAG 1 cut(s) 446
SstI GAGCTC 1 cut(s) 176
StyD4I CCNGG 3 cut(s) 748, 883, 1184
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 5 cut(s) 187, 364, 508, 1052, 1078
TaiI ACGT 2 cut(s) 164, 982
TaqI TCGA 5 cut(s) 176, 336, 350, 534, 561
TasI AATT 7 cut(s) 291, 820, 969, 1158, 1197, 1203, 1211
TatI WGTACW 2 cut(s) 862, 1060
TauI GCSGC 1 cut(s) 227
TfiI GAWTC 3 cut(s) 39, 934, 1028
Tru1I TTAA 1 cut(s) 1143
Tru9I TTAA 1 cut(s) 1143
TscAI CASTG 1 cut(s) 513
TseFI GTSAC 1 cut(s) 1132
TseI GCWGC 2 cut(s) 16, 45
Tsp45I GTSAC 1 cut(s) 1132
TspDTI ATGAA 3 cut(s) 129, 788, 1204
TspGWI ACGGA 2 cut(s) 215, 833
TspRI CASTG 1 cut(s) 513
VpaK11BI GGWCC 1 cut(s) 857
XagI CCTNNNNNAGG 2 cut(s) 753, 1013
XapI RAATTY 2 cut(s) 1203, 1211
XceI RCATGY 1 cut(s) 869
XhoI CTCGAG 2 cut(s) 349, 560
XmnI GAANNNNTTC 2 cut(s) 248, 399
XspI CTAG 1 cut(s) 446
ZraI GACGTC 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.