Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008793

Physical Location & Seq

Genomic Coordinates Reverse (-)

36851874 .. 36854828

Gene Structure 2955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g49080.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGAAGCTAAGGCCACCCAGAACTCATCAGTCGCTTCTTCTTCTACGATGTCGTTTCGGAGCTCGAAGAAGACGGTGTGGGTTTGGACGGAGAGCAAGCAAGTCATGACGGCCGCCGTGGAGAGAGGCTGGAACACATTCGTGTTTCAAAGTCAGAAACTTGCGGATGACTGGTCTTCCATTGCGTTGATAGATCCTCTTTTGATGAAAGAGGGAGGGATTTTCGATAGCGAAAACACCAGAGTTGCCACAGTTTTTGAGGTTTCTAGTCCTGAAGAGTTGGAACAGCTTCAACCTGAAAATGGGGTAGGGGAGAATGTTGTTGTTGATTTACTAGATTGGCAGGTGATACCTGCTGAGAACATAGTTGCAGCATTTCAAGGGAGTCAGAAGACGGTGTTTGCTGTGTCGAAAACCCCTGTGGAAGCACAAGTCTTTTTTGAGGCGCTCGAGCATGGTCTTGGTGGAGTTGTTTTGAAAGTTGAGGATGTTCAAGCAGTTCTTGACCTAAAGGACTATTTTGACAGAAGAGACGAAGTGGGCAACATATTGAGTTTGACCAAAGCCATTGTAACTGGAGTCCAAGTAGCTGGAATGGGCGATCGGGTTTGTGTTGATCTCTGTAGTCTCATGAGACCTGGTGAAGGACTGCTTGTTGGATCCTTTGCCAGAGGACTATTCCTGGTTCATTCAGAATGCTTGGAGTCAAATTACATCGCCAGCAGACCATTCCGAGTCAATGCGGGACCTGTACATGCCTATGTTGCTGTTCCTGGAGGAAAAACAAGCTACCTGTCAGAGTTGAAAGCAGGCAAAGAGGTGATTCTGGTTGACCAGGAAGGTCATCAAAGGACAGCAATTGTTGGACGTGCAAAGATAGAGACTAGACCACTAATCCTTGTGGAGGCAAAGATGTGTTCGGATGATCAAACAATCTACAGTATCCTTGTACAAAATGCAGAAACAGTTGCCTTAGTTTGTCCCAAGAAAGAAAGTGGAGGGCGAAAAACTGCAATCCCTGTGACTTCACTTAAAGTCGGAGATGAAATTATGCTCAGATTACAGGGAGGAGCCCGGCATACGGGAATTGAAATTCAAGAATTCATTGTGGAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHQS

Protein Analysis

373

Amino Acids

40.5

Weight (kDa)

5.13

Isoelectric Point (pI)

39.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHQS	PF01959	54 - 205	2.3e-44	3-dehydroquinate synthase II N-terminal domain
DHQS_2nd	PF26558	220 - 364	1.8e-63	3-dehydroquinate synthase II C-terminal domain
DHQS_2nd	PF26558	405 - 441	6.3e-07	3-dehydroquinate synthase II C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28760 AT3G28760
fragaria_vesca	FvH4_6g49080 FvH4_6g49080
malus_domestica	MD09G1048800.v1.1
prunus_persica	Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1
pyrus_communis	pycom111g03960
rosa_chinensis	RchiOBHm_Chr2g0168871
rosa_laevigata	RLG00000021812
rosa_multiflora	Rmu_ssc0000393.1_g000009
rosa_roxburghii	Rroxscaffold_2G00082610
rosa_rugosa	Rorug02G0535900
rosa_samantha	Rh2AG606900 Rh2BG619700 Rh2CG588300 Rh2DG630300
rosa_wichuraiana	Rw2G050320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	334
Acc36I	ACCTGC	2 cut(s)	334, 361
AciI	CCGC	3 cut(s)	114, 164, 743
AclWI	GGATC	3 cut(s)	188, 654, 667
AcoI	YGGCCR	1 cut(s)	111
AcsI	RAATTY	2 cut(s)	1092, 1100
AcuI	CTGAAG	1 cut(s)	294
AfaI	GTAC	2 cut(s)	753, 951
AfiI	CCNNNNNNNGG	4 cut(s)	302, 644, 904, 1081
AgsI	TTSAA	8 cut(s)	149, 293, 380, 478, 494, 805, 1091, 1097
AjiI	CACGTC	1 cut(s)	869
AjnI	CCWGG	4 cut(s)	637, 681, 772, 834
AleI	CACNNNNGTG	1 cut(s)	140
AluBI	AGCT	5 cut(s)	8, 63, 289, 590, 789
AluI	AGCT	5 cut(s)	8, 63, 289, 590, 789
Alw21I	GWGCWC	1 cut(s)	65
Alw26I	GTCTC	4 cut(s)	525, 628, 632, 875
AlwI	GGATC	3 cut(s)	188, 654, 667
Ama87I	CYCGRG	1 cut(s)	449
AoxI	GGCC	2 cut(s)	12, 111
ApeKI	GCWGC	1 cut(s)	371
ApoI	RAATTY	2 cut(s)	1092, 1100
Asp700I	GAANNNNTTC	2 cut(s)	137, 288
AspLEI	GCGC	1 cut(s)	448
AspS9I	GGNCC	1 cut(s)	746
AsuC2I	CCSGG	1 cut(s)	1075
AsuHPI	GGTGA	3 cut(s)	358, 653, 832
AvaI	CYCGRG	1 cut(s)	449
AvaII	GGWCC	1 cut(s)	746
BamHI	GGATCC	1 cut(s)	659
BanII	GRGCYC	2 cut(s)	65, 1075
BbsI	GAAGAC	3 cut(s)	77, 168, 398
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	1 cut(s)	383
BceAI	ACGGC	2 cut(s)	101, 126
BciT130I	CCWGG	4 cut(s)	639, 683, 774, 836
BciVI	GTATCC	1 cut(s)	953
BclI	TGATCA	1 cut(s)	925
BcnI	CCSGG	1 cut(s)	1075
BcoDI	GTCTC	4 cut(s)	525, 628, 632, 875
BfaI	CTAG	3 cut(s)	267, 335, 885
BfmI	CTRYAG	2 cut(s)	622, 937
BfoI	RGCGCY	1 cut(s)	449
BfuAI	ACCTGC	2 cut(s)	334, 361
BfuI	GTATCC	1 cut(s)	953
BisI	GCNGC	2 cut(s)	114, 372
BlsI	GCNGC	2 cut(s)	115, 373
Bme1390I	CCNGG	5 cut(s)	639, 683, 774, 836, 1075
Bme18I	GGWCC	1 cut(s)	746
BmeT110I	CYCGRG	1 cut(s)	449
BmgBI	CACGTC	1 cut(s)	869
BmgT120I	GGNCC	1 cut(s)	746
BmiI	GGNNCC	3 cut(s)	661, 747, 1072
BmrFI	CCNGG	5 cut(s)	639, 683, 774, 836, 1075
BpiI	GAAGAC	3 cut(s)	77, 168, 398
BpmI	CTGGAG	2 cut(s)	597, 795
Bpu10I	CCTNAGC	1 cut(s)	9
BpuMI	CCSGG	1 cut(s)	1075
BsaI	GGTCTC	1 cut(s)	628
BsaJI	CCNNGG	1 cut(s)	117
BsaXI	ACNNNNNCTCC	2 cut(s)	570, 600
Bsc4I	CCNNNNNNNGG	4 cut(s)	302, 644, 904, 1081
Bse1I	ACTGG	2 cut(s)	176, 580
Bse3DI	GCAATG	1 cut(s)	180
BseBI	CCWGG	4 cut(s)	639, 683, 774, 836
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	3 cut(s)	172, 493, 928
BseLI	CCNNNNNNNGG	4 cut(s)	302, 644, 904, 1081
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	2 cut(s)	348, 1069
BseNI	ACTGG	2 cut(s)	176, 580
BseRI	GAGGAG	1 cut(s)	1083
BseX3I	CGGCCG	1 cut(s)	111
BseXI	GCAGC	1 cut(s)	383
Bsh1285I	CGRYCG	2 cut(s)	114, 604
BshFI	GGCC	2 cut(s)	14, 113
BsiEI	CGRYCG	2 cut(s)	114, 604
BsiHKAI	GWGCWC	1 cut(s)	65
BsiHKCI	CYCGRG	1 cut(s)	449
BsiSI	CCGG	1 cut(s)	1075
BslFI	GGGAC	2 cut(s)	759, 966
BslI	CCNNNNNNNGG	4 cut(s)	302, 644, 904, 1081
BsmAI	GTCTC	4 cut(s)	525, 628, 632, 875
BsmBI	CGTCTC	1 cut(s)	525
BsmFI	GGGAC	2 cut(s)	759, 966
BsmI	GAATGC	1 cut(s)	701
BsnI	GGCC	2 cut(s)	14, 113
Bso31I	GGTCTC	1 cut(s)	628
BsoBI	CYCGRG	1 cut(s)	449
Bsp1286I	GDGCHC	2 cut(s)	65, 1075
Bsp1407I	TGTACA	2 cut(s)	751, 949
Bsp143I	GATC	5 cut(s)	193, 601, 616, 659, 925
BspACI	CCGC	3 cut(s)	114, 164, 743
BspANI	GGCC	2 cut(s)	14, 113
BspCNI	CTCAG	2 cut(s)	349, 1068
BspHI	TCATGA	2 cut(s)	105, 630
BspLI	GGNNCC	3 cut(s)	661, 747, 1072
BspMI	ACCTGC	2 cut(s)	334, 361
BspPI	GGATC	3 cut(s)	188, 654, 667
BspTNI	GGTCTC	1 cut(s)	628
BsrDI	GCAATG	1 cut(s)	180
BsrGI	TGTACA	2 cut(s)	751, 949
BsrI	ACTGG	2 cut(s)	176, 580
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	5 cut(s)	193, 601, 616, 659, 925
Bst2UI	CCWGG	4 cut(s)	639, 683, 774, 836
Bst4CI	ACNGT	5 cut(s)	76, 253, 397, 941, 967
Bst6I	CTCTTC	2 cut(s)	270, 523
BstAUI	TGTACA	2 cut(s)	751, 949
BstC8I	GCNNGC	3 cut(s)	98, 721, 811
BstDEI	CTNAG	4 cut(s)	9, 357, 973, 1055
BstDSI	CCRYGG	1 cut(s)	117
BstENI	CCTNNNNNAGG	2 cut(s)	642, 902
BstF5I	GGATG	3 cut(s)	172, 493, 928
BstH2I	RGCGCY	1 cut(s)	449
BstHHI	GCGC	1 cut(s)	448
BstKTI	GATC	5 cut(s)	196, 604, 619, 662, 928
BstMAI	GTCTC	4 cut(s)	525, 628, 632, 875
BstMBI	GATC	5 cut(s)	193, 601, 616, 659, 925
BstMCI	CGRYCG	2 cut(s)	114, 604
BstMWI	GCNNNNNNNGC	1 cut(s)	764
BstNI	CCWGG	4 cut(s)	639, 683, 774, 836
BstNSI	RCATGY	1 cut(s)	758
BstSCI	CCNGG	5 cut(s)	637, 681, 772, 834, 1073
BstSFI	CTRYAG	2 cut(s)	622, 937
BstV1I	GCAGC	1 cut(s)	383
BstV2I	GAAGAC	3 cut(s)	77, 168, 398
BstX2I	RGATCY	2 cut(s)	193, 659
BstXI	CCANNNNNNTGG	1 cut(s)	590
BstYI	RGATCY	2 cut(s)	193, 659
BstZI	CGGCCG	1 cut(s)	111
BsuI	GTATCC	1 cut(s)	953
BsuRI	GGCC	2 cut(s)	14, 113
BtgI	CCRYGG	1 cut(s)	117
BtgZI	GCGATG	1 cut(s)	700
BtrI	CACGTC	1 cut(s)	869
BtsCI	GGATG	3 cut(s)	172, 493, 928
BveI	ACCTGC	2 cut(s)	334, 361
Cac8I	GCNNGC	3 cut(s)	98, 721, 811
CciI	TCATGA	2 cut(s)	105, 630
CfoI	GCGC	1 cut(s)	448
Cfr13I	GGNCC	1 cut(s)	746
CsiI	ACCWGGT	1 cut(s)	637
Csp6I	GTAC	2 cut(s)	752, 950
CspCI	CAANNNNNGTGG	2 cut(s)	238, 273
CviAII	CATG	4 cut(s)	106, 455, 631, 755
CviQI	GTAC	2 cut(s)	752, 950
DdeI	CTNAG	4 cut(s)	9, 357, 973, 1055
DpnI	GATC	5 cut(s)	195, 603, 618, 661, 927
DpnII	GATC	5 cut(s)	193, 601, 616, 659, 925
EaeI	YGGCCR	1 cut(s)	111
EagI	CGGCCG	1 cut(s)	111
Eam1104I	CTCTTC	2 cut(s)	270, 523
EarI	CTCTTC	2 cut(s)	270, 523
Ecl136II	GAGCTC	1 cut(s)	63
EclXI	CGGCCG	1 cut(s)	111
Eco24I	GRGCYC	2 cut(s)	65, 1075
Eco31I	GGTCTC	1 cut(s)	628
Eco47I	GGWCC	1 cut(s)	746
Eco52I	CGGCCG	1 cut(s)	111
Eco53kI	GAGCTC	1 cut(s)	63
Eco57I	CTGAAG	1 cut(s)	294
Eco88I	CYCGRG	1 cut(s)	449
EcoICRI	GAGCTC	1 cut(s)	63
EcoNI	CCTNNNNNAGG	2 cut(s)	642, 902
EcoO109I	RGGNCCY	1 cut(s)	746
EcoRI	GAATTC	1 cut(s)	1100
EcoRII	CCWGG	4 cut(s)	637, 681, 772, 834
EcoT38I	GRGCYC	2 cut(s)	65, 1075
Esp3I	CGTCTC	1 cut(s)	525
FaeI	CATG	4 cut(s)	109, 458, 634, 758
FaiI	YATR	9 cut(s)	107, 365, 456, 548, 632, 756, 762, 1052, 1080
FalI	AAGNNNNNCTT	4 cut(s)	486, 518, 636, 668
FaqI	GGGAC	2 cut(s)	759, 966
FatI	CATG	4 cut(s)	105, 454, 630, 754
FauI	CCCGC	1 cut(s)	736
FbaI	TGATCA	1 cut(s)	925
Fnu4HI	GCNGC	2 cut(s)	114, 372
FokI	GGATG	3 cut(s)	179, 500, 935
FriOI	GRGCYC	2 cut(s)	65, 1075
Fsp4HI	GCNGC	2 cut(s)	114, 372
FspBI	CTAG	3 cut(s)	267, 335, 885
GlaI	GCGC	1 cut(s)	447
GluI	GCNGC	2 cut(s)	114, 372
GsuI	CTGGAG	2 cut(s)	597, 795
HaeII	RGCGCY	1 cut(s)	449
HaeIII	GGCC	2 cut(s)	14, 113
HapII	CCGG	1 cut(s)	1075
HhaI	GCGC	1 cut(s)	448
Hin1II	CATG	4 cut(s)	109, 458, 634, 758
Hin6I	GCGC	1 cut(s)	446
HinP1I	GCGC	1 cut(s)	446
HincII	GTYRAC	1 cut(s)	832
HindII	GTYRAC	1 cut(s)	832
HinfI	GANTC	5 cut(s)	385, 579, 704, 735, 823
HpaII	CCGG	1 cut(s)	1075
HphI	GGTGA	3 cut(s)	358, 653, 832
Hpy166II	GTNNAC	1 cut(s)	832
Hpy188I	TCNGA	9 cut(s)	60, 156, 390, 694, 734, 799, 922, 1040, 1058
Hpy188III	TCNNGA	5 cut(s)	106, 272, 503, 631, 1097
Hpy8I	GTNNAC	1 cut(s)	832
HpyAV	CCTTC	2 cut(s)	638, 833
HpyCH4III	ACNGT	5 cut(s)	76, 253, 397, 941, 967
HpyCH4IV	ACGT	1 cut(s)	868
HpyCH4V	TGCA	4 cut(s)	371, 872, 959, 1013
HpyF10VI	GCNNNNNNNGC	1 cut(s)	764
HpyF3I	CTNAG	4 cut(s)	9, 357, 973, 1055
HpySE526I	ACGT	1 cut(s)	868
Hsp92II	CATG	4 cut(s)	109, 458, 634, 758
HspAI	GCGC	1 cut(s)	446
Ksp22I	TGATCA	1 cut(s)	925
Kzo9I	GATC	5 cut(s)	193, 601, 616, 659, 925
LmnI	GCTCC	2 cut(s)	60, 1070
Lsp1109I	GCAGC	1 cut(s)	383
MabI	ACCWGGT	1 cut(s)	637
MaeI	CTAG	3 cut(s)	267, 335, 885
MaeII	ACGT	1 cut(s)	868
MaeIII	GTNAC	2 cut(s)	571, 1021
MalI	GATC	5 cut(s)	195, 603, 618, 661, 927
MboI	GATC	5 cut(s)	193, 601, 616, 659, 925
MboII	GAAGA	8 cut(s)	30, 33, 79, 82, 168, 287, 403, 540
MfeI	CAATTG	1 cut(s)	858
MflI	RGATCY	2 cut(s)	193, 659
MhlI	GDGCHC	2 cut(s)	65, 1075
MluCI	AATT	6 cut(s)	709, 858, 1047, 1086, 1092, 1100
MlyI	GAGTC	4 cut(s)	394, 588, 713, 744
MmeI	TCCRAC	4 cut(s)	261, 637, 844, 1018
MroXI	GAANNNNTTC	2 cut(s)	137, 288
MseI	TTAA	1 cut(s)	1032
MslI	CAYNNNNRTG	2 cut(s)	140, 759
MspI	CCGG	1 cut(s)	1075
MspR9I	CCNGG	5 cut(s)	639, 683, 774, 836, 1075
MunI	CAATTG	1 cut(s)	858
Mva1269I	GAATGC	1 cut(s)	701
MvaI	CCWGG	4 cut(s)	639, 683, 774, 836
MwoI	GCNNNNNNNGC	1 cut(s)	764
NciI	CCSGG	1 cut(s)	1075
NdeII	GATC	5 cut(s)	193, 601, 616, 659, 925
NlaIII	CATG	4 cut(s)	109, 458, 634, 758
NlaIV	GGNNCC	3 cut(s)	661, 747, 1072
NmuCI	GTSAC	1 cut(s)	1021
NspI	RCATGY	1 cut(s)	758
OliI	CACNNNNGTG	1 cut(s)	140
PaeR7I	CTCGAG	1 cut(s)	449
PagI	TCATGA	2 cut(s)	105, 630
PaqCI	CACCTGC	1 cut(s)	334
PctI	GAATGC	1 cut(s)	701
PdmI	GAANNNNTTC	2 cut(s)	137, 288
PfeI	GAWTC	1 cut(s)	823
PfoI	TCCNGGA	1 cut(s)	772
PkrI	GCNGC	2 cut(s)	115, 373
Ple19I	CGATCG	1 cut(s)	604
PleI	GAGTC	4 cut(s)	393, 587, 712, 743
PpsI	GAGTC	4 cut(s)	393, 587, 712, 743
PpuMI	RGGWCCY	1 cut(s)	746
Psp124BI	GAGCTC	1 cut(s)	65
Psp5II	RGGWCCY	1 cut(s)	746
Psp6I	CCWGG	4 cut(s)	637, 681, 772, 834
PspGI	CCWGG	4 cut(s)	637, 681, 772, 834
PspN4I	GGNNCC	3 cut(s)	661, 747, 1072
PspPI	GGNCC	1 cut(s)	746
PspPPI	RGGWCCY	1 cut(s)	746
PspXI	VCTCGAGB	1 cut(s)	449
PsuI	RGATCY	2 cut(s)	193, 659
PvuI	CGATCG	1 cut(s)	604
RsaI	GTAC	2 cut(s)	753, 951
RsaNI	GTAC	2 cut(s)	752, 950
RseI	CAYNNNNRTG	2 cut(s)	140, 759
SacI	GAGCTC	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	1032
SatI	GCNGC	2 cut(s)	114, 372
Sau3AI	GATC	5 cut(s)	193, 601, 616, 659, 925
Sau96I	GGNCC	1 cut(s)	746
SchI	GAGTC	4 cut(s)	394, 588, 713, 744
ScrFI	CCNGG	5 cut(s)	639, 683, 774, 836, 1075
SduI	GDGCHC	2 cut(s)	65, 1075
SexAI	ACCWGGT	1 cut(s)	637
SfcI	CTRYAG	2 cut(s)	622, 937
Sfr274I	CTCGAG	1 cut(s)	449
SinI	GGWCC	1 cut(s)	746
SlaI	CTCGAG	1 cut(s)	449
SmiMI	CAYNNNNRTG	2 cut(s)	140, 759
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
Sse9I	AATT	6 cut(s)	709, 858, 1047, 1086, 1092, 1100
SsiI	CCGC	3 cut(s)	114, 164, 743
SspMI	CTAG	3 cut(s)	267, 335, 885
SstI	GAGCTC	1 cut(s)	65
StyD4I	CCNGG	5 cut(s)	637, 681, 772, 834, 1073
TaaI	ACNGT	5 cut(s)	76, 253, 397, 941, 967
TaiI	ACGT	1 cut(s)	871
TaqI	TCGA	4 cut(s)	65, 225, 410, 450
TasI	AATT	6 cut(s)	709, 858, 1047, 1086, 1092, 1100
TatI	WGTACW	2 cut(s)	751, 949
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	823
Tru1I	TTAA	1 cut(s)	1032
Tru9I	TTAA	1 cut(s)	1032
TseFI	GTSAC	1 cut(s)	1021
TseI	GCWGC	1 cut(s)	371
Tsp45I	GTSAC	1 cut(s)	1021
TspDTI	ATGAA	4 cut(s)	221, 677, 1059, 1093
TspGWI	ACGGA	1 cut(s)	104
VpaK11BI	GGWCC	1 cut(s)	746
XagI	CCTNNNNNAGG	2 cut(s)	642, 902
XapI	RAATTY	2 cut(s)	1092, 1100
XceI	RCATGY	1 cut(s)	758
XhoI	CTCGAG	1 cut(s)	449
XmnI	GAANNNNTTC	2 cut(s)	137, 288
XspI	CTAG	3 cut(s)	267, 335, 885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.