Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000393.1

Orthogroup ID

OG0008793

Physical Location & Seq

Genomic Coordinates Reverse (-)

66950 .. 69460

Gene Structure 2511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000393.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

atggaaaccaaggccacccagagttcatcagttgcttcttctacgacgtcgtttgggagctcgaacaagacggtgtgggtttggacggagagcaagcaggtcatgacggccgccgtggagagaggctggaacaccttcgtgtttcagagtcagaaactcgccgatgactggtcttcaattgcattgatagatcctcttttgatcaaagagggagggattttcgatagcaagaactcgagagttgctacagttgttgaggtttccaatcccaaagagttggaagagcttcaacccgaaaacggggtggctgagaatgttgttgttgatttgctagattggcaggtgataccggcggagaatatagttgcagcatttcaagggagtcagaaaacagtgtttgccatctcaaaaacccctgtcgaagcacaagtcttctttgaggctctcgagcatggtctgggtggagttgttttgaaagttgaggatgttcaagcagttcttgacctaaaggactattttgacagaagggacgaagtgggcaacatattgagtttgaccaaagccattgttactggagtccaagtagctggaatgggggatcgggtctgtgttgatctctgtagtctcatgagacctggtgaaggactgcttgttggatcatttgccagaggactatttctggttcattcagaatgcttggagtcaaattacattgccagcagacctttccgtgtcaatgcgggacctgtacatgcctatgttgctgttccaggaggaaaaacaagctacctctcagagttgaaagcaggaaaagaggtgattctggttgatcagaaaggtcatcaacgaacagcaattgttggacgtgtaaagatagagacgagaccactaatccttgtggaggcaaagatggattcggatgatcaaacaatctacagtattcttgtacaaaatgcagaaacagttgccttagtttgtcccaaaaaagaaaatggagggcaaaaaactgcaatccctgtgacttcacttaaagtcggagataaaattatgctcagattacagggaggagcccggcatacaggaattgaaattcaagaattcattgtggagaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHQS

Protein Analysis

371

Amino Acids

40.29

Weight (kDa)

5.35

Isoelectric Point (pI)

34.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28760 AT3G28760
fragaria_vesca	FvH4_6g49080 FvH4_6g49080
malus_domestica	MD09G1048800.v1.1
prunus_persica	Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1 Prupe.3G270100_v2.0.a1
pyrus_communis	pycom111g03960
rosa_chinensis	RchiOBHm_Chr2g0168871
rosa_laevigata	RLG00000021812
rosa_multiflora	Rmu_ssc0000393.1_g000009
rosa_roxburghii	Rroxscaffold_2G00082610
rosa_rugosa	Rorug02G0535900
rosa_samantha	Rh2AG606900 Rh2BG619700 Rh2CG588300 Rh2DG630300
rosa_wichuraiana	Rw2G050320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	331
AatII	GACGTC	1 cut(s)	50
Acc36I	ACCTGC	2 cut(s)	88, 331
AciI	CCGC	3 cut(s)	111, 353, 740
AclWI	GGATC	3 cut(s)	185, 606, 664
AcoI	YGGCCR	1 cut(s)	108
AcsI	RAATTY	2 cut(s)	1089, 1097
AcyI	GRCGYC	1 cut(s)	47
AfaI	GTAC	2 cut(s)	750, 948
AfiI	CCNNNNNNNGG	5 cut(s)	168, 299, 300, 641, 901
AflIII	ACRYGT	1 cut(s)	865
AgsI	TTSAA	8 cut(s)	177, 290, 377, 475, 491, 802, 1088, 1094
AjiI	CACGTC	1 cut(s)	866
AjnI	CCWGG	2 cut(s)	634, 769
AleI	CACNNNNGTG	1 cut(s)	137
AluBI	AGCT	4 cut(s)	60, 286, 587, 786
AluI	AGCT	4 cut(s)	60, 286, 587, 786
Alw21I	GWGCWC	1 cut(s)	62
Alw26I	GTCTC	4 cut(s)	625, 629, 872, 877
AlwI	GGATC	3 cut(s)	185, 606, 664
Ama87I	CYCGRG	2 cut(s)	235, 446
AoxI	GGCC	2 cut(s)	12, 108
ApeKI	GCWGC	1 cut(s)	368
ApoI	RAATTY	2 cut(s)	1089, 1097
ArsI	GACNNNNNNTTYG	2 cut(s)	414, 446
Asp700I	GAANNNNTTC	2 cut(s)	134, 285
AspS9I	GGNCC	1 cut(s)	743
AsuC2I	CCSGG	1 cut(s)	1072
AsuHPI	GGTGA	3 cut(s)	355, 650, 829
AvaI	CYCGRG	2 cut(s)	235, 446
AvaII	GGWCC	1 cut(s)	743
BanII	GRGCYC	2 cut(s)	62, 1072
BbsI	GAAGAC	2 cut(s)	165, 424
Bbv12I	GWGCWC	1 cut(s)	62
BbvI	GCAGC	1 cut(s)	380
BccI	CCATC	2 cut(s)	410, 904
BceAI	ACGGC	2 cut(s)	98, 123
BciT130I	CCWGG	2 cut(s)	636, 771
BclI	TGATCA	3 cut(s)	201, 829, 922
BcnI	CCSGG	1 cut(s)	1072
BcoDI	GTCTC	4 cut(s)	625, 629, 872, 877
BfaI	CTAG	1 cut(s)	332
BfmI	CTRYAG	3 cut(s)	246, 619, 934
BfuAI	ACCTGC	2 cut(s)	88, 331
BisI	GCNGC	2 cut(s)	111, 369
BlsI	GCNGC	2 cut(s)	112, 370
Bme1390I	CCNGG	3 cut(s)	636, 771, 1072
Bme18I	GGWCC	1 cut(s)	743
BmeT110I	CYCGRG	2 cut(s)	235, 446
BmgBI	CACGTC	1 cut(s)	866
BmgT120I	GGNCC	1 cut(s)	743
BmiI	GGNNCC	2 cut(s)	744, 1069
BmrFI	CCNGG	3 cut(s)	636, 771, 1072
BpiI	GAAGAC	2 cut(s)	165, 424
BpmI	CTGGAG	1 cut(s)	594
BpuMI	CCSGG	1 cut(s)	1072
BsaHI	GRCGYC	1 cut(s)	47
BsaI	GGTCTC	2 cut(s)	625, 877
BsaJI	CCNNGG	2 cut(s)	9, 114
BsaXI	ACNNNNNCTCC	2 cut(s)	567, 597
Bsc4I	CCNNNNNNNGG	5 cut(s)	168, 299, 300, 641, 901
Bse118I	RCCGGY	1 cut(s)	349
Bse1I	ACTGG	2 cut(s)	173, 577
Bse3DI	GCAATG	1 cut(s)	711
BseBI	CCWGG	2 cut(s)	636, 771
BseDI	CCNNGG	2 cut(s)	9, 114
BseGI	GGATG	2 cut(s)	490, 925
BseLI	CCNNNNNNNGG	5 cut(s)	168, 299, 300, 641, 901
BseMI	GCAATG	1 cut(s)	711
BseMII	CTCAG	3 cut(s)	300, 807, 1066
BseNI	ACTGG	2 cut(s)	173, 577
BseRI	GAGGAG	1 cut(s)	1080
BseX3I	CGGCCG	1 cut(s)	108
BseXI	GCAGC	1 cut(s)	380
Bsh1285I	CGRYCG	1 cut(s)	111
BshFI	GGCC	2 cut(s)	14, 110
BsiEI	CGRYCG	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	62
BsiHKCI	CYCGRG	2 cut(s)	235, 446
BsiSI	CCGG	2 cut(s)	350, 1072
BslFI	GGGAC	3 cut(s)	542, 756, 963
BslI	CCNNNNNNNGG	5 cut(s)	168, 299, 300, 641, 901
BsmAI	GTCTC	4 cut(s)	625, 629, 872, 877
BsmBI	CGTCTC	1 cut(s)	872
BsmFI	GGGAC	3 cut(s)	542, 756, 963
BsmI	GAATGC	1 cut(s)	698
BsnI	GGCC	2 cut(s)	14, 110
Bso31I	GGTCTC	2 cut(s)	625, 877
BsoBI	CYCGRG	2 cut(s)	235, 446
Bsp1286I	GDGCHC	2 cut(s)	62, 1072
Bsp1407I	TGTACA	2 cut(s)	748, 946
Bsp143I	GATC	7 cut(s)	190, 201, 598, 613, 656, 829, 922
BspACI	CCGC	3 cut(s)	111, 353, 740
BspANI	GGCC	2 cut(s)	14, 110
BspCNI	CTCAG	3 cut(s)	301, 806, 1065
BspHI	TCATGA	2 cut(s)	102, 627
BspLI	GGNNCC	2 cut(s)	744, 1069
BspMI	ACCTGC	2 cut(s)	88, 331
BspPI	GGATC	3 cut(s)	185, 606, 664
BspQI	GCTCTTC	1 cut(s)	276
BspTNI	GGTCTC	2 cut(s)	625, 877
BsrDI	GCAATG	1 cut(s)	711
BsrFI	RCCGGY	1 cut(s)	349
BsrGI	TGTACA	2 cut(s)	748, 946
BsrI	ACTGG	2 cut(s)	173, 577
BssAI	RCCGGY	1 cut(s)	349
BssECI	CCNNGG	2 cut(s)	9, 114
BssMI	GATC	7 cut(s)	190, 201, 598, 613, 656, 829, 922
BssNI	GRCGYC	1 cut(s)	47
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	2 cut(s)	636, 771
Bst4CI	ACNGT	5 cut(s)	73, 250, 394, 938, 964
Bst6I	CTCTTC	1 cut(s)	276
BstACI	GRCGYC	1 cut(s)	47
BstAUI	TGTACA	2 cut(s)	748, 946
BstC8I	GCNNGC	2 cut(s)	95, 718
BstDEI	CTNAG	4 cut(s)	309, 793, 970, 1052
BstDSI	CCRYGG	1 cut(s)	114
BstENI	CCTNNNNNAGG	2 cut(s)	639, 899
BstF5I	GGATG	2 cut(s)	490, 925
BstKTI	GATC	7 cut(s)	193, 204, 601, 616, 659, 832, 925
BstMAI	GTCTC	4 cut(s)	625, 629, 872, 877
BstMBI	GATC	7 cut(s)	190, 201, 598, 613, 656, 829, 922
BstMCI	CGRYCG	1 cut(s)	111
BstMWI	GCNNNNNNNGC	2 cut(s)	337, 761
BstNI	CCWGG	2 cut(s)	636, 771
BstNSI	RCATGY	1 cut(s)	755
BstSCI	CCNGG	3 cut(s)	634, 769, 1070
BstSFI	CTRYAG	3 cut(s)	246, 619, 934
BstV1I	GCAGC	1 cut(s)	380
BstV2I	GAAGAC	2 cut(s)	165, 424
BstX2I	RGATCY	1 cut(s)	190
BstXI	CCANNNNNNTGG	2 cut(s)	277, 587
BstYI	RGATCY	1 cut(s)	190
BstZI	CGGCCG	1 cut(s)	108
BsuRI	GGCC	2 cut(s)	14, 110
BtgI	CCRYGG	1 cut(s)	114
BtrI	CACGTC	1 cut(s)	866
BtsCI	GGATG	2 cut(s)	490, 925
BtsIMutI	CAGTG	1 cut(s)	399
BveI	ACCTGC	2 cut(s)	88, 331
Cac8I	GCNNGC	2 cut(s)	95, 718
CciI	TCATGA	2 cut(s)	102, 627
Cfr10I	RCCGGY	1 cut(s)	349
Cfr13I	GGNCC	1 cut(s)	743
CsiI	ACCWGGT	1 cut(s)	634
Csp6I	GTAC	2 cut(s)	749, 947
CviAII	CATG	4 cut(s)	103, 452, 628, 752
CviQI	GTAC	2 cut(s)	749, 947
DdeI	CTNAG	4 cut(s)	309, 793, 970, 1052
DpnI	GATC	7 cut(s)	192, 203, 600, 615, 658, 831, 924
DpnII	GATC	7 cut(s)	190, 201, 598, 613, 656, 829, 922
EaeI	YGGCCR	1 cut(s)	108
EagI	CGGCCG	1 cut(s)	108
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
EciI	GGCGGA	1 cut(s)	368
Ecl136II	GAGCTC	1 cut(s)	60
EclXI	CGGCCG	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	9
Eco24I	GRGCYC	2 cut(s)	62, 1072
Eco31I	GGTCTC	2 cut(s)	625, 877
Eco47I	GGWCC	1 cut(s)	743
Eco52I	CGGCCG	1 cut(s)	108
Eco53kI	GAGCTC	1 cut(s)	60
Eco88I	CYCGRG	2 cut(s)	235, 446
EcoICRI	GAGCTC	1 cut(s)	60
EcoNI	CCTNNNNNAGG	2 cut(s)	639, 899
EcoO109I	RGGNCCY	1 cut(s)	743
EcoRI	GAATTC	1 cut(s)	1097
EcoRII	CCWGG	2 cut(s)	634, 769
EcoT14I	CCWWGG	1 cut(s)	9
EcoT38I	GRGCYC	2 cut(s)	62, 1072
ErhI	CCWWGG	1 cut(s)	9
Esp3I	CGTCTC	1 cut(s)	872
FaeI	CATG	4 cut(s)	106, 455, 631, 755
FaiI	YATR	9 cut(s)	104, 362, 453, 545, 629, 753, 759, 1049, 1077
FalI	AAGNNNNNCTT	4 cut(s)	483, 515, 633, 665
FaqI	GGGAC	3 cut(s)	542, 756, 963
FatI	CATG	4 cut(s)	102, 451, 627, 751
FauI	CCCGC	1 cut(s)	733
FbaI	TGATCA	3 cut(s)	201, 829, 922
Fnu4HI	GCNGC	2 cut(s)	111, 369
FokI	GGATG	2 cut(s)	497, 932
FriOI	GRGCYC	2 cut(s)	62, 1072
Fsp4HI	GCNGC	2 cut(s)	111, 369
FspBI	CTAG	1 cut(s)	332
GluI	GCNGC	2 cut(s)	111, 369
GsuI	CTGGAG	1 cut(s)	594
HaeIII	GGCC	2 cut(s)	14, 110
HapII	CCGG	2 cut(s)	350, 1072
Hin1I	GRCGYC	1 cut(s)	47
Hin1II	CATG	4 cut(s)	106, 455, 631, 755
HinfI	GANTC	6 cut(s)	148, 382, 576, 701, 820, 914
HpaII	CCGG	2 cut(s)	350, 1072
HphI	GGTGA	3 cut(s)	355, 650, 829
Hpy188I	TCNGA	9 cut(s)	147, 153, 387, 691, 796, 834, 919, 1037, 1055
Hpy188III	TCNNGA	6 cut(s)	103, 237, 446, 500, 628, 1094
Hpy99I	CGWCG	2 cut(s)	49, 52
HpyAV	CCTTC	3 cut(s)	145, 519, 635
HpyCH4III	ACNGT	5 cut(s)	73, 250, 394, 938, 964
HpyCH4IV	ACGT	2 cut(s)	47, 865
HpyCH4V	TGCA	4 cut(s)	182, 368, 956, 1010
HpyF10VI	GCNNNNNNNGC	2 cut(s)	337, 761
HpyF3I	CTNAG	4 cut(s)	309, 793, 970, 1052
HpySE526I	ACGT	2 cut(s)	47, 865
Hsp92I	GRCGYC	1 cut(s)	47
Hsp92II	CATG	4 cut(s)	106, 455, 631, 755
Ksp22I	TGATCA	3 cut(s)	201, 829, 922
Kzo9I	GATC	7 cut(s)	190, 201, 598, 613, 656, 829, 922
LguI	GCTCTTC	1 cut(s)	276
LmnI	GCTCC	2 cut(s)	57, 1067
Lsp1109I	GCAGC	1 cut(s)	380
MabI	ACCWGGT	1 cut(s)	634
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	2 cut(s)	47, 865
MaeIII	GTNAC	2 cut(s)	568, 1018
MalI	GATC	7 cut(s)	192, 203, 600, 615, 658, 831, 924
MboI	GATC	7 cut(s)	190, 201, 598, 613, 656, 829, 922
MboII	GAAGA	4 cut(s)	30, 165, 293, 424
MfeI	CAATTG	2 cut(s)	177, 855
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	2 cut(s)	62, 1072
MluCI	AATT	7 cut(s)	177, 706, 855, 1044, 1083, 1089, 1097
MlyI	GAGTC	4 cut(s)	157, 391, 585, 710
MmeI	TCCRAC	4 cut(s)	258, 634, 841, 1015
MroXI	GAANNNNTTC	2 cut(s)	134, 285
MseI	TTAA	1 cut(s)	1029
MslI	CAYNNNNRTG	2 cut(s)	137, 756
MspI	CCGG	2 cut(s)	350, 1072
MspR9I	CCNGG	3 cut(s)	636, 771, 1072
MunI	CAATTG	2 cut(s)	177, 855
Mva1269I	GAATGC	1 cut(s)	698
MvaI	CCWGG	2 cut(s)	636, 771
MwoI	GCNNNNNNNGC	2 cut(s)	337, 761
NciI	CCSGG	1 cut(s)	1072
NdeII	GATC	7 cut(s)	190, 201, 598, 613, 656, 829, 922
NlaIII	CATG	4 cut(s)	106, 455, 631, 755
NlaIV	GGNNCC	2 cut(s)	744, 1069
NmuCI	GTSAC	1 cut(s)	1018
NspI	RCATGY	1 cut(s)	755
OliI	CACNNNNGTG	1 cut(s)	137
PaeR7I	CTCGAG	2 cut(s)	235, 446
PagI	TCATGA	2 cut(s)	102, 627
PaqCI	CACCTGC	1 cut(s)	331
PciSI	GCTCTTC	1 cut(s)	276
PctI	GAATGC	1 cut(s)	698
PdmI	GAANNNNTTC	2 cut(s)	134, 285
PfeI	GAWTC	2 cut(s)	820, 914
PfoI	TCCNGGA	1 cut(s)	769
PkrI	GCNGC	2 cut(s)	112, 370
PleI	GAGTC	4 cut(s)	156, 390, 584, 709
PpsI	GAGTC	4 cut(s)	156, 390, 584, 709
PpuMI	RGGWCCY	1 cut(s)	743
Psp124BI	GAGCTC	1 cut(s)	62
Psp5II	RGGWCCY	1 cut(s)	743
Psp6I	CCWGG	2 cut(s)	634, 769
PspGI	CCWGG	2 cut(s)	634, 769
PspN4I	GGNNCC	2 cut(s)	744, 1069
PspPI	GGNCC	1 cut(s)	743
PspPPI	RGGWCCY	1 cut(s)	743
PsuI	RGATCY	1 cut(s)	190
RsaI	GTAC	2 cut(s)	750, 948
RsaNI	GTAC	2 cut(s)	749, 947
RseI	CAYNNNNRTG	2 cut(s)	137, 756
SacI	GAGCTC	1 cut(s)	62
SapI	GCTCTTC	1 cut(s)	276
SaqAI	TTAA	1 cut(s)	1029
SatI	GCNGC	2 cut(s)	111, 369
Sau3AI	GATC	7 cut(s)	190, 201, 598, 613, 656, 829, 922
Sau96I	GGNCC	1 cut(s)	743
SchI	GAGTC	4 cut(s)	157, 391, 585, 710
ScrFI	CCNGG	3 cut(s)	636, 771, 1072
SduI	GDGCHC	2 cut(s)	62, 1072
SexAI	ACCWGGT	1 cut(s)	634
SfcI	CTRYAG	3 cut(s)	246, 619, 934
Sfr274I	CTCGAG	2 cut(s)	235, 446
SinI	GGWCC	1 cut(s)	743
SlaI	CTCGAG	2 cut(s)	235, 446
SmiMI	CAYNNNNRTG	2 cut(s)	137, 756
SmlI	CTYRAG	2 cut(s)	235, 446
SmoI	CTYRAG	2 cut(s)	235, 446
Sse9I	AATT	7 cut(s)	177, 706, 855, 1044, 1083, 1089, 1097
SsiI	CCGC	3 cut(s)	111, 353, 740
SspMI	CTAG	1 cut(s)	332
SstI	GAGCTC	1 cut(s)	62
StyD4I	CCNGG	3 cut(s)	634, 769, 1070
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	5 cut(s)	73, 250, 394, 938, 964
TaiI	ACGT	2 cut(s)	50, 868
TaqI	TCGA	5 cut(s)	62, 222, 236, 420, 447
TasI	AATT	7 cut(s)	177, 706, 855, 1044, 1083, 1089, 1097
TatI	WGTACW	2 cut(s)	748, 946
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	2 cut(s)	820, 914
Tru1I	TTAA	1 cut(s)	1029
Tru9I	TTAA	1 cut(s)	1029
TscAI	CASTG	1 cut(s)	399
TseFI	GTSAC	1 cut(s)	1018
TseI	GCWGC	1 cut(s)	368
Tsp45I	GTSAC	1 cut(s)	1018
TspDTI	ATGAA	3 cut(s)	15, 674, 1090
TspGWI	ACGGA	2 cut(s)	101, 719
TspRI	CASTG	1 cut(s)	399
VpaK11BI	GGWCC	1 cut(s)	743
XagI	CCTNNNNNAGG	2 cut(s)	639, 899
XapI	RAATTY	2 cut(s)	1089, 1097
XceI	RCATGY	1 cut(s)	755
XhoI	CTCGAG	2 cut(s)	235, 446
XmnI	GAANNNNTTC	2 cut(s)	134, 285
XspI	CTAG	1 cut(s)	332
ZraI	GACGTC	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.