Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015888

Physical Location & Seq

Genomic Coordinates Forward (+)

11005638 .. 11006514

Gene Structure 877 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G29000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGAGTCGAAATCTTCTTCTTCTTCTCTACCTTTGTTTGCTCTGTTCAATTTTTTCCTCATAAGTTTTTGCAGATGGGTTTCTTCTACACGTATCTTTTTATCAAGATTCGTCCCTCTTCTTCAACATCATCAACGCGTTTTCGACAAAAAGAACAACAAAGACCAACAAGAGACTTTGACCAAACAAGAAGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATATTGATATTTCTAGAGAAGAGGCAGAGATGGTTATGAGAAGCTTAGGGCTTTTTTACAACGATGATCAGCTTCAAGAACAATACAGTGCAAAAGAAGTCTCGAGTTTGTTCGAAGAGAAAGAAGCGAGTTTGGAAGAAGTCAAACAAGCTTTTGATGTGTTTGACGAAAACAAAGATGGTTTCATTGATGCTATAGAGTTACAGAGAGTTTTGACAATCTTAGGGTTTAAACAAGGATCTTACTTAGACAATTGTTTGGTAATGATTAGGTCATTAGATGGGAACAAAGATGGAAAAATCGATTTTAACGAGTTTGTTAAATTCATGGAGACTAGCTTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6

Protein Analysis

194

Amino Acids

22.7

Weight (kDa)

4.2

Isoelectric Point (pI)

55.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_FSTL1	PF23564	114 - 193	7.5e-06	Follistatin-related protein 1, EF-hand domain pair
EF-hand_7	PF13499	125 - 189	2.7e-11	EF-hand domain pair
EF-hand_1	PF00036	126 - 152	8.1e-06	EF hand domain
EF-hand_6	PF13405	126 - 155	3e-07	EF-hand domain
EF-hand_5	PF13202	128 - 151	1.2e-06	EF hand
EF-hand_1	PF00036	168 - 191	2.6e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29000 AT5G39670
fragaria_vesca	FvH4_6g48240
malus_domestica	MD00G1125300.v1.1 MD09G1052700.v1.1
prunus_persica	Prupe.3G266000_v2.0.a1
pyrus_communis	pycom17g04820
rosa_chinensis	RchiOBHm_Chr2g0167751
rosa_multiflora	Rmu_sc0002143.1_g000005
rosa_rugosa	Rorug02G0531900
rosa_samantha	Rh2AG600800 Rh2BG611400 Rh2CG581700 Rh2DG623900
rosa_wichuraiana	Rw2G049870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	138
AclWI	GGATC	1 cut(s)	484
AcsI	RAATTY	1 cut(s)	560
AflIII	ACRYGT	2 cut(s)	89, 136
AgsI	TTSAA	3 cut(s)	49, 125, 314
AluBI	AGCT	4 cut(s)	282, 310, 389, 576
AluI	AGCT	4 cut(s)	282, 310, 389, 576
Alw26I	GTCTC	3 cut(s)	167, 343, 563
AlwI	GGATC	1 cut(s)	484
Ama87I	CYCGRG	1 cut(s)	340
ApoI	RAATTY	1 cut(s)	560
AsuII	TTCGAA	1 cut(s)	351
AvaI	CYCGRG	1 cut(s)	340
BccI	CCATC	5 cut(s)	69, 262, 410, 512, 524
BclI	TGATCA	1 cut(s)	304
BcoDI	GTCTC	3 cut(s)	167, 343, 563
BfaI	CTAG	2 cut(s)	252, 573
BfmI	CTRYAG	1 cut(s)	432
BmeT110I	CYCGRG	1 cut(s)	340
BmsI	GCATC	1 cut(s)	418
Bpu10I	CCTNAGC	1 cut(s)	283
Bpu14I	TTCGAA	1 cut(s)	351
Bsa29I	ATCGAT	1 cut(s)	540
BsaAI	YACGTR	1 cut(s)	92
BseCI	ATCGAT	1 cut(s)	540
Bsh1236I	CGCG	1 cut(s)	138
BshVI	ATCGAT	1 cut(s)	540
BsiHKCI	CYCGRG	1 cut(s)	340
BslFI	GGGAC	1 cut(s)	98
BsmAI	GTCTC	3 cut(s)	167, 343, 563
BsmFI	GGGAC	1 cut(s)	98
BsoBI	CYCGRG	1 cut(s)	340
Bsp119I	TTCGAA	1 cut(s)	351
Bsp143I	GATC	2 cut(s)	304, 476
BspDI	ATCGAT	1 cut(s)	540
BspFNI	CGCG	1 cut(s)	138
BspPI	GGATC	1 cut(s)	484
BspT104I	TTCGAA	1 cut(s)	351
BssMI	GATC	2 cut(s)	304, 476
Bst4CI	ACNGT	1 cut(s)	326
Bst6I	CTCTTC	3 cut(s)	123, 252, 348
BstBAI	YACGTR	1 cut(s)	92
BstBI	TTCGAA	1 cut(s)	351
BstDEI	CTNAG	3 cut(s)	283, 460, 484
BstFNI	CGCG	1 cut(s)	138
BstKTI	GATC	2 cut(s)	307, 479
BstMAI	GTCTC	3 cut(s)	167, 343, 563
BstMBI	GATC	2 cut(s)	304, 476
BstSFI	CTRYAG	1 cut(s)	432
BstUI	CGCG	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	476
Bsu15I	ATCGAT	1 cut(s)	540
BsuTUI	ATCGAT	1 cut(s)	540
BtsIMutI	CAGTG	1 cut(s)	331
ClaI	ATCGAT	1 cut(s)	540
CviAII	CATG	1 cut(s)	565
CviJI	RGCY	5 cut(s)	282, 289, 310, 389, 576
CviKI_1	RGCY	5 cut(s)	282, 289, 310, 389, 576
DdeI	CTNAG	3 cut(s)	283, 460, 484
DpnI	GATC	2 cut(s)	306, 478
DpnII	GATC	2 cut(s)	304, 476
DraI	TTTAAA	1 cut(s)	469
Eam1104I	CTCTTC	3 cut(s)	123, 252, 348
EarI	CTCTTC	3 cut(s)	123, 252, 348
Eco88I	CYCGRG	1 cut(s)	340
FaeI	CATG	1 cut(s)	568
FaiI	YATR	4 cut(s)	62, 275, 434, 566
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	1 cut(s)	564
FbaI	TGATCA	1 cut(s)	304
FspBI	CTAG	2 cut(s)	252, 573
Hin1II	CATG	1 cut(s)	568
HindIII	AAGCTT	2 cut(s)	280, 387
HinfI	GANTC	2 cut(s)	5, 108
Hpy188III	TCNNGA	4 cut(s)	105, 252, 314, 340
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	2 cut(s)	72, 329
HpyF3I	CTNAG	3 cut(s)	283, 460, 484
HpySE526I	ACGT	1 cut(s)	91
Hsp92II	CATG	1 cut(s)	568
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	2 cut(s)	304, 476
LweI	GCATC	1 cut(s)	418
MaeI	CTAG	2 cut(s)	252, 573
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	1 cut(s)	438
MalI	GATC	2 cut(s)	306, 478
MboI	GATC	2 cut(s)	304, 476
MfeI	CAATTG	1 cut(s)	490
MflI	RGATCY	1 cut(s)	476
MluCI	AATT	3 cut(s)	49, 490, 560
MluI	ACGCGT	1 cut(s)	136
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	3 cut(s)	68, 126, 253
MseI	TTAA	3 cut(s)	468, 546, 558
MssI	GTTTAAAC	1 cut(s)	469
MunI	CAATTG	1 cut(s)	490
MvnI	CGCG	1 cut(s)	138
NdeII	GATC	2 cut(s)	304, 476
NlaIII	CATG	1 cut(s)	568
NspV	TTCGAA	1 cut(s)	351
PaeR7I	CTCGAG	1 cut(s)	340
PcsI	WCGNNNNNNNCGW	1 cut(s)	546
PfeI	GAWTC	1 cut(s)	108
PleI	GAGTC	1 cut(s)	13
PmeI	GTTTAAAC	1 cut(s)	469
PpsI	GAGTC	1 cut(s)	13
Ppu21I	YACGTR	1 cut(s)	92
PsuI	RGATCY	1 cut(s)	476
SaqAI	TTAA	3 cut(s)	468, 546, 558
Sau3AI	GATC	2 cut(s)	304, 476
SchI	GAGTC	1 cut(s)	14
SetI	ASST	7 cut(s)	34, 94, 284, 312, 391, 512, 578
SfaNI	GCATC	1 cut(s)	418
SfcI	CTRYAG	1 cut(s)	432
Sfr274I	CTCGAG	1 cut(s)	340
SfuI	TTCGAA	1 cut(s)	351
SlaI	CTCGAG	1 cut(s)	340
SmlI	CTYRAG	1 cut(s)	340
SmoI	CTYRAG	1 cut(s)	340
Sse9I	AATT	3 cut(s)	49, 490, 560
SspMI	CTAG	2 cut(s)	252, 573
TaaI	ACNGT	1 cut(s)	326
TaiI	ACGT	1 cut(s)	94
TaqI	TCGA	5 cut(s)	8, 144, 341, 351, 540
TasI	AATT	3 cut(s)	49, 490, 560
TfiI	GAWTC	1 cut(s)	108
Tru1I	TTAA	3 cut(s)	468, 546, 558
Tru9I	TTAA	3 cut(s)	468, 546, 558
TscAI	CASTG	1 cut(s)	331
TspDTI	ATGAA	2 cut(s)	412, 553
TspRI	CASTG	1 cut(s)	331
XapI	RAATTY	1 cut(s)	560
XbaI	TCTAGA	1 cut(s)	251
XhoI	CTCGAG	1 cut(s)	340
XspI	CTAG	2 cut(s)	252, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.