Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0015888

Physical Location & Seq

Genomic Coordinates Reverse (-)

77453056 .. 77453621

Gene Structure 566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G049870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGAGAAGACATCATCAACATCCTCTTCACCATTTCTTGTTTTGATTGGTACAATCTTGTTACAATCGATTGCTAACTGGTTAGGTAGAATTCAGGAGCTCTTTTTTAGATTTCAGTCTTTTCTCCTATCCCAGTATACCTGTGATAACTCAAAGCCAGCTGCCGTATGTAAAAAGAAGGATGATGGTAGCTTGAGCAGAGAAGATGTGAACATGGTGATGGGAAACTTGGGAATTTTTTGCAGTTCAGAAGGGCTACCTGAATCATTCTGTTCTGCTGAGCTTTCAGGGCTGTTTGATGAGAACGAGCCGAGCTTGGAGGAAGTCAAACAAGCTTTTGATGTGTTTGATGAGAACAAGGATGGGTTTATCGATGCAAGAGAGTTGCAGAGAGTTCTCTGTATATTGGGCTTGAAGGAAGGTTCAAAGCTAGAAGACTGCCAGAAAATGATCGAGACATTTGATGAAAACAGAGATGGAAGGATAGAGTTCTTTGAATTTGTAAAATTTATGGAGGCTAGCTTTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

176

Amino Acids

19.92

Weight (kDa)

4.45

Isoelectric Point (pI)

53.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	107 - 171	5.8e-14	EF-hand domain pair
EF-hand_1	PF00036	108 - 133	2e-06	EF hand domain
EF-hand_6	PF13405	108 - 137	5.1e-07	EF-hand domain
EF-hand_5	PF13202	110 - 133	3.5e-07	EF hand
EF-hand_8	PF13833	124 - 172	3.7e-07	EF-hand domain pair
EF-hand_1	PF00036	146 - 172	4.1e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29000 AT5G39670
fragaria_vesca	FvH4_6g48240
malus_domestica	MD00G1125300.v1.1 MD09G1052700.v1.1
prunus_persica	Prupe.3G266000_v2.0.a1
pyrus_communis	pycom17g04820
rosa_chinensis	RchiOBHm_Chr2g0167751
rosa_multiflora	Rmu_sc0002143.1_g000005
rosa_rugosa	Rorug02G0531900
rosa_samantha	Rh2AG600800 Rh2BG611400 Rh2CG581700 Rh2DG623900
rosa_wichuraiana	Rw2G049870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	137
AcsI	RAATTY	4 cut(s)	90, 234, 497, 506
AfaI	GTAC	1 cut(s)	52
AgsI	TTSAA	3 cut(s)	415, 426, 497
AluBI	AGCT	8 cut(s)	100, 161, 192, 283, 315, 335, 430, 522
AluI	AGCT	8 cut(s)	100, 161, 192, 283, 315, 335, 430, 522
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	1 cut(s)	449
ApeKI	GCWGC	1 cut(s)	161
ApoI	RAATTY	4 cut(s)	90, 234, 497, 506
AsuHPI	GGTGA	2 cut(s)	21, 229
AsuNHI	GCTAGC	1 cut(s)	518
BanII	GRGCYC	1 cut(s)	102
BbsI	GAAGAC	2 cut(s)	14, 441
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	4 cut(s)	179, 214, 356, 470
BceAI	ACGGC	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	449
BfaI	CTAG	2 cut(s)	431, 519
BisI	GCNGC	1 cut(s)	162
BlpI	GCTNAGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	163
BmrI	ACTGGG	1 cut(s)	127
BmsI	GCATC	1 cut(s)	364
BmtI	GCTAGC	1 cut(s)	522
BmuI	ACTGGG	1 cut(s)	127
BpiI	GAAGAC	2 cut(s)	14, 441
Bpu1102I	GCTNAGC	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	214
Bsa29I	ATCGAT	2 cut(s)	68, 372
Bse1I	ACTGG	2 cut(s)	83, 133
BseCI	ATCGAT	2 cut(s)	68, 372
BseGI	GGATG	3 cut(s)	20, 187, 367
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	2 cut(s)	83, 133
BseXI	GCAGC	1 cut(s)	148
BshVI	ATCGAT	2 cut(s)	68, 372
BsiHKAI	GWGCWC	1 cut(s)	102
BsmAI	GTCTC	1 cut(s)	449
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	450
Bsp1720I	GCTNAGC	1 cut(s)	279
BspCNI	CTCAG	1 cut(s)	271
BspDI	ATCGAT	2 cut(s)	68, 372
BspOI	GCTAGC	1 cut(s)	522
BsrI	ACTGG	2 cut(s)	83, 133
BssMI	GATC	1 cut(s)	450
BssNAI	GTATAC	1 cut(s)	138
Bst1107I	GTATAC	1 cut(s)	138
Bst6I	CTCTTC	1 cut(s)	31
BstC8I	GCNNGC	2 cut(s)	159, 520
BstDEI	CTNAG	1 cut(s)	279
BstF5I	GGATG	3 cut(s)	20, 187, 367
BstKTI	GATC	1 cut(s)	453
BstMAI	GTCTC	1 cut(s)	449
BstMBI	GATC	1 cut(s)	450
BstMWI	GCNNNNNNNGC	1 cut(s)	289
BstV1I	GCAGC	1 cut(s)	148
BstV2I	GAAGAC	2 cut(s)	14, 441
BstZ17I	GTATAC	1 cut(s)	138
Bsu15I	ATCGAT	2 cut(s)	68, 372
BsuTUI	ATCGAT	2 cut(s)	68, 372
BtsCI	GGATG	3 cut(s)	20, 187, 367
Cac8I	GCNNGC	2 cut(s)	159, 520
ClaI	ATCGAT	2 cut(s)	68, 372
Csp6I	GTAC	1 cut(s)	51
CviAII	CATG	1 cut(s)	214
CviQI	GTAC	1 cut(s)	51
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	1 cut(s)	452
DpnII	GATC	1 cut(s)	450
Eam1104I	CTCTTC	1 cut(s)	31
EarI	CTCTTC	1 cut(s)	31
Ecl136II	GAGCTC	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	100
EcoICRI	GAGCTC	1 cut(s)	100
EcoRI	GAATTC	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	102
FaeI	CATG	1 cut(s)	217
FaiI	YATR	5 cut(s)	138, 169, 215, 404, 512
FatI	CATG	1 cut(s)	213
FblI	GTMKAC	1 cut(s)	137
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	3 cut(s)	7, 194, 374
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	2 cut(s)	431, 519
GluI	GCNGC	1 cut(s)	162
Hin1II	CATG	1 cut(s)	217
HindIII	AAGCTT	1 cut(s)	333
HinfI	GANTC	1 cut(s)	263
HphI	GGTGA	2 cut(s)	21, 229
Hpy166II	GTNNAC	2 cut(s)	138, 211
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	2 cut(s)	95, 454
Hpy8I	GTNNAC	2 cut(s)	138, 211
HpyAV	CCTTC	5 cut(s)	172, 245, 409, 413, 474
HpyCH4V	TGCA	3 cut(s)	243, 377, 388
HpyF10VI	GCNNNNNNNGC	1 cut(s)	289
HpyF3I	CTNAG	1 cut(s)	279
Hsp92II	CATG	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	450
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	8 cut(s)	64, 80, 146, 154, 171, 273, 273, 455
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	2 cut(s)	431, 519
MaeIII	GTNAC	1 cut(s)	60
MalI	GATC	1 cut(s)	452
MboI	GATC	1 cut(s)	450
MboII	GAAGA	4 cut(s)	18, 19, 215, 446
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	4 cut(s)	90, 234, 497, 506
MnlI	CCTC	3 cut(s)	34, 313, 508
MslI	CAYNNNNRTG	1 cut(s)	218
MspA1I	CMGCKG	1 cut(s)	161
MwoI	GCNNNNNNNGC	1 cut(s)	289
NdeII	GATC	1 cut(s)	450
NheI	GCTAGC	1 cut(s)	518
NlaIII	CATG	1 cut(s)	217
NmeAIII	GCCGAG	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	263
PkrI	GCNGC	1 cut(s)	163
Psp124BI	GAGCTC	1 cut(s)	102
PvuII	CAGCTG	1 cut(s)	161
RsaI	GTAC	1 cut(s)	52
RsaNI	GTAC	1 cut(s)	51
RseI	CAYNNNNRTG	1 cut(s)	218
SacI	GAGCTC	1 cut(s)	102
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	1 cut(s)	450
SduI	GDGCHC	1 cut(s)	102
SfaNI	GCATC	1 cut(s)	364
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
Sse9I	AATT	4 cut(s)	90, 234, 497, 506
SspMI	CTAG	2 cut(s)	431, 519
SstI	GAGCTC	1 cut(s)	102
TaqI	TCGA	3 cut(s)	68, 372, 453
TasI	AATT	4 cut(s)	90, 234, 497, 506
TfiI	GAWTC	1 cut(s)	263
TseI	GCWGC	1 cut(s)	161
TspDTI	ATGAA	1 cut(s)	480
XapI	RAATTY	4 cut(s)	90, 234, 497, 506
XmiI	GTMKAC	1 cut(s)	137
XspI	CTAG	2 cut(s)	431, 519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.