Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015888

Physical Location & Seq

Genomic Coordinates Forward (+)

15883179 .. 15884067

Gene Structure 889 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G39670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGACTGAAAACCAATTATATAGCTTTATAACCATGAAGAGTTCATTGTCTAAATGCAAACAGTCTTCTTCTTTGTCTTTCCCTTTGTTTGGTCTGATCAACTTCTTCCTCATCGGTTTTTTCAGATGGGTTTCTTTTGCTCAGTTATTTTTCTCTAGGTTCTGGCCTCTTGTTCAACACCAGCAATGTGTTTCCGAGAAGAAGAGCAAAGATCTTGAGTTCCAAACTTCGATCAAACACGAAGAATATCGTGATGATGATGATGATGGTCTTTGCAGAGAAGATGTAGGGATGGTTATGAAAAGCTTAGGGCTTTCCACTGACCAAGAAAACGAGGGACTTCAAAAACAGTACAGTTCCAAGGAGGTTTCGAATCTGTTCGAAGAGAAAGAGCCAAGCTTAGAGGAAGTGAAGCAAGCTTTTGATGTCTTTGATGAAAACAGAGATGGGTTTATCGATCCTATAGATTTGCAGAGAGTTTTGACAATCCTTGGCTTAAAGCAAGGATCTAACCTTGAGAACTGCAGGAGAATGATCAGATCATTCGATGGAAGTAAAGACGGAAGAATCGATTTCTATGGATTTGTGAAATTCATGGAGAACAACTTCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

204

Amino Acids

23.83

Weight (kDa)

4.93

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIF-1	PF21008	106 - 199	1e-05	Allograft inflammatory factor 1
EF-hand_7	PF13499	135 - 199	4.7e-11	EF-hand domain pair
EF-hand_6	PF13405	136 - 165	1.7e-06	EF-hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0015888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29000 AT5G39670
fragaria_vesca	FvH4_6g48240
malus_domestica	MD00G1125300.v1.1 MD09G1052700.v1.1
prunus_persica	Prupe.3G266000_v2.0.a1
pyrus_communis	pycom17g04820
rosa_chinensis	RchiOBHm_Chr2g0167751
rosa_multiflora	Rmu_sc0002143.1_g000005
rosa_rugosa	Rorug02G0531900
rosa_samantha	Rh2AG600800 Rh2BG611400 Rh2CG581700 Rh2DG623900
rosa_wichuraiana	Rw2G049870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	29
AclWI	GGATC	2 cut(s)	452, 514
AcsI	RAATTY	1 cut(s)	590
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgsI	TTSAA	2 cut(s)	176, 344
AluBI	AGCT	4 cut(s)	24, 306, 399, 419
AluI	AGCT	4 cut(s)	24, 306, 399, 419
AlwI	GGATC	2 cut(s)	452, 514
AoxI	GGCC	1 cut(s)	164
ApoI	RAATTY	1 cut(s)	590
Asp700I	GAANNNNTTC	2 cut(s)	377, 605
AsuII	TTCGAA	2 cut(s)	371, 381
BbsI	GAAGAC	1 cut(s)	57
BccI	CCATC	5 cut(s)	120, 260, 286, 440, 542
BclI	TGATCA	2 cut(s)	96, 534
BfaI	CTAG	1 cut(s)	156
BfmI	CTRYAG	2 cut(s)	462, 523
BglII	AGATCT	1 cut(s)	211
BpiI	GAAGAC	1 cut(s)	57
Bpu10I	CCTNAGC	1 cut(s)	307
Bpu14I	TTCGAA	2 cut(s)	371, 381
BpuEI	CTTGAG	2 cut(s)	236, 536
Bsa29I	ATCGAT	2 cut(s)	456, 570
BsaJI	CCNNGG	2 cut(s)	360, 490
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse3DI	GCAATG	1 cut(s)	191
BseCI	ATCGAT	2 cut(s)	456, 570
BseDI	CCNNGG	2 cut(s)	360, 490
BseGI	GGATG	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMI	GCAATG	1 cut(s)	191
BseMII	CTCAG	1 cut(s)	155
BshFI	GGCC	1 cut(s)	166
BshVI	ATCGAT	2 cut(s)	456, 570
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	351
BsnI	GGCC	1 cut(s)	166
Bsp119I	TTCGAA	2 cut(s)	371, 381
Bsp143I	GATC	7 cut(s)	96, 211, 231, 457, 506, 534, 539
BspANI	GGCC	1 cut(s)	166
BspCNI	CTCAG	1 cut(s)	154
BspDI	ATCGAT	2 cut(s)	456, 570
BspMAI	CTGCAG	1 cut(s)	527
BspPI	GGATC	2 cut(s)	452, 514
BspQI	GCTCTTC	1 cut(s)	197
BspT104I	TTCGAA	2 cut(s)	371, 381
BsrDI	GCAATG	1 cut(s)	191
BssECI	CCNNGG	2 cut(s)	360, 490
BssMI	GATC	7 cut(s)	96, 211, 231, 457, 506, 534, 539
BssT1I	CCWWGG	2 cut(s)	360, 490
Bst4CI	ACNGT	3 cut(s)	63, 351, 356
Bst6I	CTCTTC	3 cut(s)	32, 197, 378
BstBI	TTCGAA	2 cut(s)	371, 381
BstC8I	GCNNGC	1 cut(s)	417
BstDEI	CTNAG	3 cut(s)	141, 307, 400
BstF5I	GGATG	1 cut(s)	297
BstKTI	GATC	7 cut(s)	99, 214, 234, 460, 509, 537, 542
BstMBI	GATC	7 cut(s)	96, 211, 231, 457, 506, 534, 539
BstSFI	CTRYAG	2 cut(s)	462, 523
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	2 cut(s)	211, 506
BstYI	RGATCY	2 cut(s)	211, 506
Bsu15I	ATCGAT	2 cut(s)	456, 570
BsuRI	GGCC	1 cut(s)	166
BsuTUI	ATCGAT	2 cut(s)	456, 570
BtsCI	GGATG	1 cut(s)	297
BtsIMutI	CAGTG	1 cut(s)	318
Cac8I	GCNNGC	1 cut(s)	417
ClaI	ATCGAT	2 cut(s)	456, 570
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	2 cut(s)	34, 595
CviJI	RGCY	8 cut(s)	24, 166, 306, 313, 394, 399, 419, 495
CviKI_1	RGCY	8 cut(s)	24, 166, 306, 313, 394, 399, 419, 495
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	3 cut(s)	141, 307, 400
DpnI	GATC	7 cut(s)	98, 213, 233, 459, 508, 536, 541
DpnII	GATC	7 cut(s)	96, 211, 231, 457, 506, 534, 539
Eam1104I	CTCTTC	3 cut(s)	32, 197, 378
EarI	CTCTTC	3 cut(s)	32, 197, 378
Eco130I	CCWWGG	2 cut(s)	360, 490
EcoT14I	CCWWGG	2 cut(s)	360, 490
ErhI	CCWWGG	2 cut(s)	360, 490
FaeI	CATG	2 cut(s)	37, 598
FaiI	YATR	8 cut(s)	19, 21, 29, 35, 299, 464, 579, 596
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	2 cut(s)	33, 594
FbaI	TGATCA	2 cut(s)	96, 534
FokI	GGATG	1 cut(s)	304
FspBI	CTAG	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	166
Hin1II	CATG	2 cut(s)	37, 598
HindIII	AAGCTT	3 cut(s)	304, 397, 417
HinfI	GANTC	2 cut(s)	373, 567
Hpy188I	TCNGA	4 cut(s)	96, 125, 196, 539
Hpy188III	TCNNGA	2 cut(s)	215, 251
HpyCH4III	ACNGT	3 cut(s)	63, 351, 356
HpyCH4V	TGCA	4 cut(s)	57, 276, 472, 525
HpyF3I	CTNAG	3 cut(s)	141, 307, 400
Hsp92II	CATG	2 cut(s)	37, 598
Ksp22I	TGATCA	2 cut(s)	96, 534
Kzo9I	GATC	7 cut(s)	96, 211, 231, 457, 506, 534, 539
LguI	GCTCTTC	1 cut(s)	197
LpnPI	CCDG	3 cut(s)	148, 194, 511
MaeI	CTAG	1 cut(s)	156
MalI	GATC	7 cut(s)	98, 213, 233, 459, 508, 536, 541
MboI	GATC	7 cut(s)	96, 211, 231, 457, 506, 534, 539
MflI	RGATCY	2 cut(s)	211, 506
MluCI	AATT	2 cut(s)	14, 590
MnlI	CCTC	5 cut(s)	119, 177, 328, 358, 397
MroXI	GAANNNNTTC	2 cut(s)	377, 605
MseI	TTAA	1 cut(s)	497
NdeII	GATC	7 cut(s)	96, 211, 231, 457, 506, 534, 539
NlaIII	CATG	2 cut(s)	37, 598
NspV	TTCGAA	2 cut(s)	371, 381
PciSI	GCTCTTC	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	1 cut(s)	567
PdmI	GAANNNNTTC	2 cut(s)	377, 605
PfeI	GAWTC	2 cut(s)	373, 567
PsiI	TTATAA	1 cut(s)	29
PstI	CTGCAG	1 cut(s)	527
PsuI	RGATCY	2 cut(s)	211, 506
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
SapI	GCTCTTC	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	497
Sau3AI	GATC	7 cut(s)	96, 211, 231, 457, 506, 534, 539
SetI	ASST	7 cut(s)	26, 161, 308, 369, 401, 421, 516
SfcI	CTRYAG	2 cut(s)	462, 523
SfuI	TTCGAA	2 cut(s)	371, 381
SmlI	CTYRAG	2 cut(s)	215, 515
SmoI	CTYRAG	2 cut(s)	215, 515
Sse9I	AATT	2 cut(s)	14, 590
SspMI	CTAG	1 cut(s)	156
StyI	CCWWGG	2 cut(s)	360, 490
TaaI	ACNGT	3 cut(s)	63, 351, 356
TaqI	TCGA	6 cut(s)	230, 371, 381, 456, 546, 570
TasI	AATT	2 cut(s)	14, 590
TatI	WGTACW	1 cut(s)	351
TfiI	GAWTC	2 cut(s)	373, 567
Tru1I	TTAA	1 cut(s)	497
Tru9I	TTAA	1 cut(s)	497
TscAI	CASTG	1 cut(s)	325
TspDTI	ATGAA	5 cut(s)	33, 50, 314, 450, 583
TspGWI	ACGGA	1 cut(s)	576
TspRI	CASTG	1 cut(s)	325
XapI	RAATTY	1 cut(s)	590
XmnI	GAANNNNTTC	2 cut(s)	377, 605
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.