Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015888

Physical Location & Seq

Genomic Coordinates Reverse (-)

36372870 .. 36373469

Gene Structure 600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g48240.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGAGAAGACATCATCATCGACTACTGATAACGCATCATCTTTAATTTTCATTGTTCTGATTGATGCAATTATTACTATATTGGTGCACACAGTATCTAACTGGTTAGATAGCACCCAGAATTGCTTGTCAAAGTTCCAGTCTTTTGTCCAATCCCAACATAAGTGTTGCAACTCAAAGGTTCGGGATGAGAAGAGCTTCGATTCGGAGTTGAGCCAGCTGCCAAAGATATGTGAAAAGAAGGATGATGGTAGCATGAGCAGAGATGATGTGAAGATGGTGATGGGAAACTTGGGGATTTTTTGCAGTTCAGAAGGGGAGGAACTACCTGAATCATTCTGTTCGGATGAGCTTTCAGGGCTGTTTGATGAGAACGAGCCGAGCGTGGAGGAAGTGAAACAAGCTTTTGATGTGTTTGATGAGAACAAAGATGGGTTTATCGATGCAAGGGAGTTGCAGAGAGTTCTCTGTATTTTGGGCTTGAAGGAAGGTTCAAAGCTAGAAGACTGCCAGAAAATGATCGAGACGTTTGATGAAAACAGAGATGGAAGGATAGAATTCTTTGAATTTGTAAAGTTCATGGAGGCTAGCTTTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

200

Amino Acids

22.57

Weight (kDa)

4.41

Isoelectric Point (pI)

51.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	130 - 194	6.2e-14	EF-hand domain pair
EF-hand_1	PF00036	131 - 156	2.4e-06	EF hand domain
EF-hand_6	PF13405	131 - 160	6.2e-07	EF-hand domain
EF-hand_5	PF13202	133 - 156	4.2e-07	EF hand
EF-hand_8	PF13833	147 - 195	4.5e-07	EF-hand domain pair
EF-hand_1	PF00036	169 - 195	4.9e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29000 AT5G39670
fragaria_vesca	FvH4_6g48240
malus_domestica	MD00G1125300.v1.1 MD09G1052700.v1.1
prunus_persica	Prupe.3G266000_v2.0.a1
pyrus_communis	pycom17g04820
rosa_chinensis	RchiOBHm_Chr2g0167751
rosa_multiflora	Rmu_sc0002143.1_g000005
rosa_rugosa	Rorug02G0531900
rosa_samantha	Rh2AG600800 Rh2BG611400 Rh2CG581700 Rh2DG623900
rosa_wichuraiana	Rw2G049870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	557, 566
AgsI	TTSAA	3 cut(s)	484, 495, 566
AluBI	AGCT	6 cut(s)	198, 220, 352, 404, 499, 591
AluI	AGCT	6 cut(s)	198, 220, 352, 404, 499, 591
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	1 cut(s)	518
Alw44I	GTGCAC	1 cut(s)	86
ApaLI	GTGCAC	1 cut(s)	86
ApeKI	GCWGC	1 cut(s)	220
ApoI	RAATTY	2 cut(s)	557, 566
ArsI	GACNNNNNNTTYG	2 cut(s)	125, 157
Asp700I	GAANNNNTTC	1 cut(s)	197
AsuHPI	GGTGA	1 cut(s)	292
AsuNHI	GCTAGC	1 cut(s)	587
BaeGI	GKGCMC	1 cut(s)	90
BbsI	GAAGAC	2 cut(s)	14, 510
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	207
BccI	CCATC	5 cut(s)	242, 271, 277, 425, 539
BcoDI	GTCTC	1 cut(s)	518
BfaI	CTAG	3 cut(s)	500, 588, 598
BisI	GCNGC	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	222
BmsI	GCATC	3 cut(s)	44, 55, 433
BmtI	GCTAGC	1 cut(s)	591
BpiI	GAAGAC	2 cut(s)	14, 510
Bsa29I	ATCGAT	1 cut(s)	441
Bse1I	ACTGG	2 cut(s)	107, 139
BseCI	ATCGAT	1 cut(s)	441
BseGI	GGATG	3 cut(s)	193, 250, 352
BseNI	ACTGG	2 cut(s)	107, 139
BseSI	GKGCMC	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	207
BshVI	ATCGAT	1 cut(s)	441
BsiHKAI	GWGCWC	1 cut(s)	90
BsmAI	GTCTC	1 cut(s)	518
BsmBI	CGTCTC	1 cut(s)	518
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	519
BspDI	ATCGAT	1 cut(s)	441
BspOI	GCTAGC	1 cut(s)	591
BspQI	GCTCTTC	1 cut(s)	188
BsrI	ACTGG	2 cut(s)	107, 139
BssMI	GATC	1 cut(s)	519
Bst4CI	ACNGT	1 cut(s)	94
Bst6I	CTCTTC	1 cut(s)	188
BstC8I	GCNNGC	2 cut(s)	218, 589
BstF5I	GGATG	3 cut(s)	193, 250, 352
BstKTI	GATC	1 cut(s)	522
BstMAI	GTCTC	1 cut(s)	518
BstMBI	GATC	1 cut(s)	519
BstMWI	GCNNNNNNNGC	1 cut(s)	358
BstSLI	GKGCMC	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	207
BstV2I	GAAGAC	2 cut(s)	14, 510
Bsu15I	ATCGAT	1 cut(s)	441
BsuTUI	ATCGAT	1 cut(s)	441
BtsCI	GGATG	3 cut(s)	193, 250, 352
Cac8I	GCNNGC	2 cut(s)	218, 589
ClaI	ATCGAT	1 cut(s)	441
CviAII	CATG	2 cut(s)	256, 580
DpnI	GATC	1 cut(s)	521
DpnII	GATC	1 cut(s)	519
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
EcoRI	GAATTC	1 cut(s)	557
Esp3I	CGTCTC	1 cut(s)	518
FaeI	CATG	2 cut(s)	259, 583
FaiI	YATR	5 cut(s)	80, 162, 232, 257, 581
FatI	CATG	2 cut(s)	255, 579
Fnu4HI	GCNGC	1 cut(s)	221
FokI	GGATG	3 cut(s)	200, 257, 359
Fsp4HI	GCNGC	1 cut(s)	221
FspBI	CTAG	3 cut(s)	500, 588, 598
GluI	GCNGC	1 cut(s)	221
Hin1II	CATG	2 cut(s)	259, 583
HindIII	AAGCTT	1 cut(s)	402
HinfI	GANTC	2 cut(s)	203, 332
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	4 cut(s)	60, 208, 313, 346
Hpy188III	TCNNGA	2 cut(s)	185, 523
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	5 cut(s)	235, 308, 478, 482, 543
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	527
HpyCH4V	TGCA	6 cut(s)	68, 88, 171, 306, 446, 457
HpyF10VI	GCNNNNNNNGC	1 cut(s)	358
HpySE526I	ACGT	1 cut(s)	527
Hsp92II	CATG	2 cut(s)	259, 583
Kzo9I	GATC	1 cut(s)	519
LguI	GCTCTTC	1 cut(s)	188
LpnPI	CCDG	7 cut(s)	88, 131, 152, 230, 342, 342, 524
Lsp1109I	GCAGC	1 cut(s)	207
LweI	GCATC	3 cut(s)	44, 55, 433
MaeI	CTAG	3 cut(s)	500, 588, 598
MaeII	ACGT	1 cut(s)	527
MalI	GATC	1 cut(s)	521
MboI	GATC	1 cut(s)	519
MboII	GAAGA	4 cut(s)	19, 205, 286, 515
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	5 cut(s)	45, 69, 121, 557, 566
MnlI	CCTC	3 cut(s)	313, 382, 577
MroXI	GAANNNNTTC	1 cut(s)	197
MseI	TTAA	1 cut(s)	44
MspA1I	CMGCKG	1 cut(s)	220
MwoI	GCNNNNNNNGC	1 cut(s)	358
NdeII	GATC	1 cut(s)	519
NheI	GCTAGC	1 cut(s)	587
NlaIII	CATG	2 cut(s)	259, 583
NmeAIII	GCCGAG	1 cut(s)	405
PciSI	GCTCTTC	1 cut(s)	188
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PdmI	GAANNNNTTC	1 cut(s)	197
PfeI	GAWTC	2 cut(s)	203, 332
PkrI	GCNGC	1 cut(s)	222
PvuII	CAGCTG	1 cut(s)	220
SapI	GCTCTTC	1 cut(s)	188
SaqAI	TTAA	1 cut(s)	44
SatI	GCNGC	1 cut(s)	221
Sau3AI	GATC	1 cut(s)	519
SduI	GDGCHC	1 cut(s)	90
SfaNI	GCATC	3 cut(s)	44, 55, 433
Sse9I	AATT	5 cut(s)	45, 69, 121, 557, 566
SspMI	CTAG	3 cut(s)	500, 588, 598
TaaI	ACNGT	1 cut(s)	94
TaiI	ACGT	1 cut(s)	530
TaqI	TCGA	4 cut(s)	20, 201, 441, 522
TasI	AATT	5 cut(s)	45, 69, 121, 557, 566
TfiI	GAWTC	2 cut(s)	203, 332
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TseI	GCWGC	1 cut(s)	220
TspDTI	ATGAA	3 cut(s)	40, 549, 568
VneI	GTGCAC	1 cut(s)	86
XapI	RAATTY	2 cut(s)	557, 566
XmnI	GAANNNNTTC	1 cut(s)	197
XspI	CTAG	3 cut(s)	500, 588, 598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.