Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002143.1

Orthogroup ID

OG0015888

Physical Location & Seq

Genomic Coordinates Reverse (-)

20040 .. 20609

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002143.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atggagaagacatcatcaacatcctcttcaccatttcttgttttgattggtacaatcttgttacaatcgattgctaactggttaggtagaattcaggagctcttttttagatttcagtcttttctcctatcccagtatacctgtgataactcaaaggttcgggatgagaagaacttggattcggagtcgagccagctgccaaagctatataaaaagaaggatgatggtagcttgagcagagaagatgtgaacatggtgatgggaaacttgggaattttttgcagttcagaagggctacctgaatcattctgttctgctgagctttcagggctgtttgatgagaacgagccgagcttggaggaagtcaaacaagcttttgatgtgtttgatgagaacaaggatgggtttatcgatgcaagagagttgcagagagttctctgtatattgggcttgaaggaaggttcaaagctagaagactgccagaaaatgatcgagacatttgatgaaaacagagatggaaggatagagttctttgaatttgtaaaatttatggaggctagcttttgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

189

Amino Acids

21.58

Weight (kDa)

4.48

Isoelectric Point (pI)

55.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29000 AT5G39670
fragaria_vesca	FvH4_6g48240
malus_domestica	MD00G1125300.v1.1 MD09G1052700.v1.1
prunus_persica	Prupe.3G266000_v2.0.a1
pyrus_communis	pycom17g04820
rosa_chinensis	RchiOBHm_Chr2g0167751
rosa_multiflora	Rmu_sc0002143.1_g000005
rosa_rugosa	Rorug02G0531900
rosa_samantha	Rh2AG600800 Rh2BG611400 Rh2CG581700 Rh2DG623900
rosa_wichuraiana	Rw2G049870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	137
AcsI	RAATTY	4 cut(s)	90, 273, 536, 545
AfaI	GTAC	1 cut(s)	52
AgsI	TTSAA	3 cut(s)	454, 465, 536
AluBI	AGCT	9 cut(s)	100, 196, 205, 231, 322, 354, 374, 469, 561
AluI	AGCT	9 cut(s)	100, 196, 205, 231, 322, 354, 374, 469, 561
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	1 cut(s)	488
ApeKI	GCWGC	1 cut(s)	196
ApoI	RAATTY	4 cut(s)	90, 273, 536, 545
AsuHPI	GGTGA	2 cut(s)	21, 268
AsuNHI	GCTAGC	1 cut(s)	557
BanII	GRGCYC	1 cut(s)	102
BbsI	GAAGAC	2 cut(s)	14, 480
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	183
BccI	CCATC	4 cut(s)	218, 253, 395, 509
BcgI	CGANNNNNNTGC	2 cut(s)	178, 212
BcoDI	GTCTC	1 cut(s)	488
BfaI	CTAG	2 cut(s)	470, 558
BisI	GCNGC	1 cut(s)	197
BlpI	GCTNAGC	1 cut(s)	318
BlsI	GCNGC	1 cut(s)	198
BmrI	ACTGGG	1 cut(s)	127
BmsI	GCATC	1 cut(s)	403
BmtI	GCTAGC	1 cut(s)	561
BmuI	ACTGGG	1 cut(s)	127
BpiI	GAAGAC	2 cut(s)	14, 480
Bpu1102I	GCTNAGC	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	253
Bsa29I	ATCGAT	2 cut(s)	68, 411
Bse1I	ACTGG	2 cut(s)	83, 133
BseCI	ATCGAT	2 cut(s)	68, 411
BseGI	GGATG	4 cut(s)	20, 169, 226, 406
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	2 cut(s)	83, 133
BseXI	GCAGC	1 cut(s)	183
BshVI	ATCGAT	2 cut(s)	68, 411
BsiHKAI	GWGCWC	1 cut(s)	102
BsmAI	GTCTC	1 cut(s)	488
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	489
Bsp1720I	GCTNAGC	1 cut(s)	318
BspCNI	CTCAG	1 cut(s)	310
BspDI	ATCGAT	2 cut(s)	68, 411
BspOI	GCTAGC	1 cut(s)	561
BsrI	ACTGG	2 cut(s)	83, 133
BssMI	GATC	1 cut(s)	489
BssNAI	GTATAC	1 cut(s)	138
Bst1107I	GTATAC	1 cut(s)	138
Bst6I	CTCTTC	1 cut(s)	31
BstC8I	GCNNGC	2 cut(s)	194, 559
BstDEI	CTNAG	1 cut(s)	318
BstF5I	GGATG	4 cut(s)	20, 169, 226, 406
BstKTI	GATC	1 cut(s)	492
BstMAI	GTCTC	1 cut(s)	488
BstMBI	GATC	1 cut(s)	489
BstMWI	GCNNNNNNNGC	2 cut(s)	202, 328
BstV1I	GCAGC	1 cut(s)	183
BstV2I	GAAGAC	2 cut(s)	14, 480
BstZ17I	GTATAC	1 cut(s)	138
Bsu15I	ATCGAT	2 cut(s)	68, 411
BsuTUI	ATCGAT	2 cut(s)	68, 411
BtsCI	GGATG	4 cut(s)	20, 169, 226, 406
Cac8I	GCNNGC	2 cut(s)	194, 559
ClaI	ATCGAT	2 cut(s)	68, 411
Csp6I	GTAC	1 cut(s)	51
CviAII	CATG	1 cut(s)	253
CviQI	GTAC	1 cut(s)	51
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	1 cut(s)	491
DpnII	GATC	1 cut(s)	489
Eam1104I	CTCTTC	1 cut(s)	31
EarI	CTCTTC	1 cut(s)	31
Ecl136II	GAGCTC	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	100
EcoICRI	GAGCTC	1 cut(s)	100
EcoRI	GAATTC	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	102
FaeI	CATG	1 cut(s)	256
FaiI	YATR	6 cut(s)	138, 208, 210, 254, 443, 551
FatI	CATG	1 cut(s)	252
FblI	GTMKAC	1 cut(s)	137
Fnu4HI	GCNGC	1 cut(s)	197
FokI	GGATG	4 cut(s)	7, 176, 233, 413
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	1 cut(s)	197
FspBI	CTAG	2 cut(s)	470, 558
GluI	GCNGC	1 cut(s)	197
Hin1II	CATG	1 cut(s)	256
HindIII	AAGCTT	1 cut(s)	372
HinfI	GANTC	3 cut(s)	179, 185, 302
HphI	GGTGA	2 cut(s)	21, 268
Hpy166II	GTNNAC	2 cut(s)	138, 250
Hpy188I	TCNGA	2 cut(s)	184, 289
Hpy188III	TCNNGA	3 cut(s)	95, 161, 493
Hpy8I	GTNNAC	2 cut(s)	138, 250
HpyAV	CCTTC	5 cut(s)	211, 284, 448, 452, 513
HpyCH4V	TGCA	3 cut(s)	282, 416, 427
HpyF10VI	GCNNNNNNNGC	2 cut(s)	202, 328
HpyF3I	CTNAG	1 cut(s)	318
Hsp92II	CATG	1 cut(s)	256
Kzo9I	GATC	1 cut(s)	489
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	8 cut(s)	64, 80, 146, 154, 206, 312, 312, 494
Lsp1109I	GCAGC	1 cut(s)	183
LweI	GCATC	1 cut(s)	403
MaeI	CTAG	2 cut(s)	470, 558
MaeIII	GTNAC	1 cut(s)	60
MalI	GATC	1 cut(s)	491
MboI	GATC	1 cut(s)	489
MboII	GAAGA	5 cut(s)	18, 19, 181, 254, 485
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	4 cut(s)	90, 273, 536, 545
MlyI	GAGTC	1 cut(s)	194
MnlI	CCTC	3 cut(s)	34, 352, 547
MslI	CAYNNNNRTG	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	196
MwoI	GCNNNNNNNGC	2 cut(s)	202, 328
NdeII	GATC	1 cut(s)	489
NheI	GCTAGC	1 cut(s)	557
NlaIII	CATG	1 cut(s)	256
NmeAIII	GCCGAG	1 cut(s)	375
PfeI	GAWTC	2 cut(s)	179, 302
PkrI	GCNGC	1 cut(s)	198
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
Psp124BI	GAGCTC	1 cut(s)	102
PvuII	CAGCTG	1 cut(s)	196
RsaI	GTAC	1 cut(s)	52
RsaNI	GTAC	1 cut(s)	51
RseI	CAYNNNNRTG	1 cut(s)	257
SacI	GAGCTC	1 cut(s)	102
SatI	GCNGC	1 cut(s)	197
Sau3AI	GATC	1 cut(s)	489
SchI	GAGTC	1 cut(s)	194
SduI	GDGCHC	1 cut(s)	102
SfaNI	GCATC	1 cut(s)	403
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
Sse9I	AATT	4 cut(s)	90, 273, 536, 545
SspMI	CTAG	2 cut(s)	470, 558
SstI	GAGCTC	1 cut(s)	102
TaqI	TCGA	4 cut(s)	68, 188, 411, 492
TasI	AATT	4 cut(s)	90, 273, 536, 545
TfiI	GAWTC	2 cut(s)	179, 302
TseI	GCWGC	1 cut(s)	196
TspDTI	ATGAA	1 cut(s)	519
XapI	RAATTY	4 cut(s)	90, 273, 536, 545
XmiI	GTMKAC	1 cut(s)	137
XspI	CTAG	2 cut(s)	470, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.