RchiOBHm_Chr2g0167751

calcium-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0015888
Physical Location & Seq
Reverse (-)
82129857 .. 82130538
682 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53551

Sequence Viewer

Length: 570 bp
ATGGAGAAGACATCATCAACATCCTCTTCACCATTTCTTGTTTTGATTGGTACAATCTTGTTACAATCTATTGCTAACTGGTTAGGTAGAATTCAGGAGCTCTTTTTTAGATTTCAGTCTTTTCTCCTATCCCAGTATACCTGTGATAACTCAAAGGTTCGGGATGAGAAGAACTTGGATTCGGAGTCGAGCCAGCTGCCAAAGGTATGTAAAAAGAAGGATGATGGTAGCTTGAGCAGAGAAGATGTGAACATGGTGATGGGAAACTTGGGAATTTTTTTCAGTTCAGAAGGGCTACCTGAATCATTCTGTTCTGCTGAGCTTTCAGGGCTGTTTGATGAGAACGAGCCGAGCTTGGAGGAAGTCAAACAAGCTTTTGATGTGTTTGATGAGAACAAGGATGGGTTTATCGATGCAAGAGAGTTGCAGAGAGTTCTCTGTATATTGGGCTTGAAGGAAGGTTCAAAGCTAGAAGACTGCCAGAAAATGATCGAGACATTTGATGAAAACAGAGATGGAAGGATAGAGTTCTTTGAATTTGTAAAATTTATGGAGGCTAGCTTTTGCTAA

Protein Analysis

189

Amino Acids

21.55

Weight (kDa)

4.48

Isoelectric Point (pI)

55.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 120 - 184 6.7e-14 EF-hand domain pair
EF-hand_1 PF00036 121 - 146 2.2e-06 EF hand domain
EF-hand_6 PF13405 121 - 150 5.8e-07 EF-hand domain
EF-hand_5 PF13202 123 - 146 3.9e-07 EF hand
EF-hand_8 PF13833 137 - 185 4.2e-07 EF-hand domain pair
EF-hand_1 PF00036 159 - 185 4.6e-06 EF hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015888)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29000 AT5G39670
fragaria_vesca FvH4_6g48240
malus_domestica MD00G1125300.v1.1 MD09G1052700.v1.1
prunus_persica Prupe.3G266000_v2.0.a1
pyrus_communis pycom17g04820
rosa_chinensis RchiOBHm_Chr2g0167751
rosa_multiflora Rmu_sc0002143.1_g000005
rosa_rugosa Rorug02G0531900
rosa_samantha Rh2AG600800 Rh2BG611400 Rh2CG581700 Rh2DG623900
rosa_wichuraiana Rw2G049870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 137
AcsI RAATTY 4 cut(s) 90, 273, 536, 545
AfaI GTAC 1 cut(s) 52
AgsI TTSAA 3 cut(s) 454, 465, 536
AluBI AGCT 8 cut(s) 100, 196, 231, 322, 354, 374, 469, 561
AluI AGCT 8 cut(s) 100, 196, 231, 322, 354, 374, 469, 561
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 1 cut(s) 488
ApeKI GCWGC 1 cut(s) 196
ApoI RAATTY 4 cut(s) 90, 273, 536, 545
AsuHPI GGTGA 2 cut(s) 21, 268
AsuNHI GCTAGC 1 cut(s) 557
BanII GRGCYC 1 cut(s) 102
BbsI GAAGAC 2 cut(s) 14, 480
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 183
BccI CCATC 4 cut(s) 218, 253, 395, 509
BcgI CGANNNNNNTGC 2 cut(s) 178, 212
BcoDI GTCTC 1 cut(s) 488
BfaI CTAG 2 cut(s) 470, 558
BisI GCNGC 1 cut(s) 197
BlpI GCTNAGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 198
BmrI ACTGGG 1 cut(s) 127
BmsI GCATC 1 cut(s) 403
BmtI GCTAGC 1 cut(s) 561
BmuI ACTGGG 1 cut(s) 127
BpiI GAAGAC 2 cut(s) 14, 480
Bpu1102I GCTNAGC 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 253
Bsa29I ATCGAT 1 cut(s) 411
Bse1I ACTGG 2 cut(s) 83, 133
BseCI ATCGAT 1 cut(s) 411
BseGI GGATG 4 cut(s) 20, 169, 226, 406
BseMII CTCAG 1 cut(s) 309
BseNI ACTGG 2 cut(s) 83, 133
BseXI GCAGC 1 cut(s) 183
BshVI ATCGAT 1 cut(s) 411
BsiHKAI GWGCWC 1 cut(s) 102
BsmAI GTCTC 1 cut(s) 488
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 1 cut(s) 489
Bsp1720I GCTNAGC 1 cut(s) 318
BspCNI CTCAG 1 cut(s) 310
BspDI ATCGAT 1 cut(s) 411
BspOI GCTAGC 1 cut(s) 561
BsrI ACTGG 2 cut(s) 83, 133
BssMI GATC 1 cut(s) 489
BssNAI GTATAC 1 cut(s) 138
Bst1107I GTATAC 1 cut(s) 138
Bst6I CTCTTC 1 cut(s) 31
BstC8I GCNNGC 2 cut(s) 194, 559
BstDEI CTNAG 1 cut(s) 318
BstF5I GGATG 4 cut(s) 20, 169, 226, 406
BstKTI GATC 1 cut(s) 492
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 1 cut(s) 489
BstMWI GCNNNNNNNGC 1 cut(s) 328
BstV1I GCAGC 1 cut(s) 183
BstV2I GAAGAC 2 cut(s) 14, 480
BstZ17I GTATAC 1 cut(s) 138
Bsu15I ATCGAT 1 cut(s) 411
BsuTUI ATCGAT 1 cut(s) 411
BtsCI GGATG 4 cut(s) 20, 169, 226, 406
Cac8I GCNNGC 2 cut(s) 194, 559
ClaI ATCGAT 1 cut(s) 411
Csp6I GTAC 1 cut(s) 51
CviAII CATG 1 cut(s) 253
CviQI GTAC 1 cut(s) 51
DdeI CTNAG 1 cut(s) 318
DpnI GATC 1 cut(s) 491
DpnII GATC 1 cut(s) 489
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
Ecl136II GAGCTC 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 102
Eco53kI GAGCTC 1 cut(s) 100
EcoICRI GAGCTC 1 cut(s) 100
EcoRI GAATTC 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 102
FaeI CATG 1 cut(s) 256
FaiI YATR 5 cut(s) 138, 208, 254, 443, 551
FatI CATG 1 cut(s) 252
FblI GTMKAC 1 cut(s) 137
Fnu4HI GCNGC 1 cut(s) 197
FokI GGATG 4 cut(s) 7, 176, 233, 413
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 197
FspBI CTAG 2 cut(s) 470, 558
GluI GCNGC 1 cut(s) 197
Hin1II CATG 1 cut(s) 256
HindIII AAGCTT 1 cut(s) 372
HinfI GANTC 3 cut(s) 179, 185, 302
HphI GGTGA 2 cut(s) 21, 268
Hpy166II GTNNAC 2 cut(s) 138, 250
Hpy188I TCNGA 2 cut(s) 184, 289
Hpy188III TCNNGA 3 cut(s) 95, 161, 493
Hpy8I GTNNAC 2 cut(s) 138, 250
HpyAV CCTTC 5 cut(s) 211, 284, 448, 452, 513
HpyCH4V TGCA 2 cut(s) 416, 427
HpyF10VI GCNNNNNNNGC 1 cut(s) 328
HpyF3I CTNAG 1 cut(s) 318
Hsp92II CATG 1 cut(s) 256
Kzo9I GATC 1 cut(s) 489
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 8 cut(s) 64, 80, 146, 154, 206, 312, 312, 494
Lsp1109I GCAGC 1 cut(s) 183
LweI GCATC 1 cut(s) 403
MaeI CTAG 2 cut(s) 470, 558
MaeIII GTNAC 1 cut(s) 60
MalI GATC 1 cut(s) 491
MboI GATC 1 cut(s) 489
MboII GAAGA 5 cut(s) 18, 19, 181, 254, 485
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 4 cut(s) 90, 273, 536, 545
MlyI GAGTC 1 cut(s) 194
MnlI CCTC 3 cut(s) 34, 352, 547
MslI CAYNNNNRTG 1 cut(s) 257
MspA1I CMGCKG 1 cut(s) 196
MwoI GCNNNNNNNGC 1 cut(s) 328
NdeII GATC 1 cut(s) 489
NheI GCTAGC 1 cut(s) 557
NlaIII CATG 1 cut(s) 256
NmeAIII GCCGAG 1 cut(s) 375
PfeI GAWTC 2 cut(s) 179, 302
PkrI GCNGC 1 cut(s) 198
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
Psp124BI GAGCTC 1 cut(s) 102
PvuII CAGCTG 1 cut(s) 196
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
RseI CAYNNNNRTG 1 cut(s) 257
SacI GAGCTC 1 cut(s) 102
SatI GCNGC 1 cut(s) 197
Sau3AI GATC 1 cut(s) 489
SchI GAGTC 1 cut(s) 194
SduI GDGCHC 1 cut(s) 102
SfaNI GCATC 1 cut(s) 403
SmiMI CAYNNNNRTG 1 cut(s) 257
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
Sse9I AATT 4 cut(s) 90, 273, 536, 545
SspMI CTAG 2 cut(s) 470, 558
SstI GAGCTC 1 cut(s) 102
TaqI TCGA 3 cut(s) 188, 411, 492
TasI AATT 4 cut(s) 90, 273, 536, 545
TfiI GAWTC 2 cut(s) 179, 302
TseI GCWGC 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 519
XapI RAATTY 4 cut(s) 90, 273, 536, 545
XmiI GTMKAC 1 cut(s) 137
XspI CTAG 2 cut(s) 470, 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.