AT3G29300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016663
Physical Location & Seq
Forward (+)
11246750 .. 11247873
1124 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G29300.1

Sequence Viewer

Length: 642 bp
ATGGCAGCAACATTGGTAATGGTAGTGAGCTTAGTCATGGTCTTAAGCTTAGTCTTAGTCCTACTAGCTGAACTCTACTGCTCTCTCTTACTCCGCCGCCGCCGCCACAACTCCCTCAACCTCCCCATCACCACCACCGTCTCCACCGCCGCAAGAACCACCACAACTCTAAACCAAGCCATCTCCACAACAAGCAACGACAACACTTCACCATCTAACATCAATTCTTCTTCTCCTAATCCTCTCTACACAGGCGTTATTCAAACTCCAACCAAAACCCATTATAACCATGAACCATATTTACAAGCTTCTCTTGATCTGATTCAAGAAACCATTGTTAACGATTCTGTAGACAACTTCATCTACATATCAAACCCAATGTACTCGAACGACGCTACAAGTAAACCAACCACACCATTTGAAACCCCTGAGTCTTCACCGTCACGTCTTGAGACCGGTGAGTCATCATCCTCTTCTTCCGGCGAAGAAGATAACGATCATATAATCGAAGTTTCAACGCCAACATTAACTCCAATGAAGGATCTACCTGAAAAGGCATGCTCTGTTTCACTAAAAAATGTGGAAACTTCTGCTAGTGAATCAAACTCGTCTGGTTCGCCGTATACTTCACCGTCGTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

23.02

Weight (kDa)

4.7

Isoelectric Point (pI)

63.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016663)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29300 AT3G29300
fragaria_vesca FvH4_1g04931
malus_domestica MD02G1047900.v1.1
prunus_persica Prupe.7G230300_v2.0.a1
pyrus_communis pycom15g16710
rosa_chinensis RchiOBHm_Chr2g0090531
rosa_laevigata RLG00000016120
rosa_multiflora Rmu_sc0004514.1_g000027
rosa_roxburghii Rroxscaffold_2G00151060
rosa_rugosa Rorug02G0008900
rosa_samantha Rh2AG054100 Rh2DG054300
rosa_wichuraiana Rw2G004770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 285
AasI GACNNNNNNGTC 1 cut(s) 460
AccI GTMKAC 2 cut(s) 351, 623
AciI CCGC 6 cut(s) 94, 97, 100, 103, 147, 150
AclWI GGATC 1 cut(s) 549
AfaI GTAC 1 cut(s) 383
AflII CTTAAG 1 cut(s) 43
AgeI ACCGGT 1 cut(s) 455
AgsI TTSAA 4 cut(s) 263, 326, 422, 516
AjiI CACGTC 1 cut(s) 446
AleI CACNNNNGTG 1 cut(s) 634
AluBI AGCT 4 cut(s) 30, 48, 68, 308
AluI AGCT 4 cut(s) 30, 48, 68, 308
Alw26I GTCTC 2 cut(s) 145, 446
AlwI GGATC 1 cut(s) 549
ApeKI GCWGC 1 cut(s) 5
AsiGI ACCGGT 1 cut(s) 455
AsuHPI GGTGA 5 cut(s) 121, 201, 429, 470, 621
BbsI GAAGAC 1 cut(s) 426
BbvI GCAGC 1 cut(s) 17
BccI CCATC 3 cut(s) 134, 188, 220
BceAI ACGGC 1 cut(s) 604
BcoDI GTCTC 2 cut(s) 145, 446
BfaI CTAG 2 cut(s) 65, 594
BfmI CTRYAG 1 cut(s) 348
BfrI CTTAAG 1 cut(s) 43
BisI GCNGC 5 cut(s) 6, 97, 100, 103, 150
BlsI GCNGC 5 cut(s) 7, 98, 101, 104, 151
BmgBI CACGTC 1 cut(s) 446
BpiI GAAGAC 1 cut(s) 426
BpuEI CTTGAG 1 cut(s) 470
BsaBI GATNNNNATC 1 cut(s) 495
BsaI GGTCTC 1 cut(s) 446
BsaWI WCCGGW 1 cut(s) 455
BsaXI ACNNNNNCTCC 2 cut(s) 514, 544
Bse118I RCCGGY 1 cut(s) 455
Bse8I GATNNNNATC 1 cut(s) 495
BseGI GGATG 1 cut(s) 467
BseJI GATNNNNATC 1 cut(s) 495
BseMII CTCAG 1 cut(s) 420
BseXI GCAGC 1 cut(s) 17
BshTI ACCGGT 1 cut(s) 455
BsiSI CCGG 2 cut(s) 456, 480
BsmAI GTCTC 2 cut(s) 145, 446
BsmBI CGTCTC 1 cut(s) 145
Bso31I GGTCTC 1 cut(s) 446
Bsp143I GATC 3 cut(s) 316, 496, 541
BspACI CCGC 6 cut(s) 94, 97, 100, 103, 147, 150
BspCNI CTCAG 1 cut(s) 421
BspPI GGATC 1 cut(s) 549
BspTI CTTAAG 1 cut(s) 43
BspTNI GGTCTC 1 cut(s) 446
BsrFI RCCGGY 1 cut(s) 455
BssAI RCCGGY 1 cut(s) 455
BssMI GATC 3 cut(s) 316, 496, 541
BssNAI GTATAC 1 cut(s) 624
Bst1107I GTATAC 1 cut(s) 624
Bst4CI ACNGT 3 cut(s) 139, 441, 633
Bst6I CTCTTC 1 cut(s) 478
BstAFI CTTAAG 1 cut(s) 43
BstC8I GCNNGC 1 cut(s) 559
BstDEI CTNAG 4 cut(s) 31, 49, 55, 429
BstF5I GGATG 1 cut(s) 467
BstKTI GATC 3 cut(s) 319, 499, 544
BstMAI GTCTC 2 cut(s) 145, 446
BstMBI GATC 3 cut(s) 316, 496, 541
BstMWI GCNNNNNNNGC 1 cut(s) 102
BstNSI RCATGY 1 cut(s) 561
BstSFI CTRYAG 1 cut(s) 348
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 426
BstX2I RGATCY 1 cut(s) 541
BstYI RGATCY 1 cut(s) 541
BstZ17I GTATAC 1 cut(s) 624
BtrI CACGTC 1 cut(s) 446
BtsCI GGATG 1 cut(s) 467
Cac8I GCNNGC 1 cut(s) 559
Cfr10I RCCGGY 1 cut(s) 455
CseI GACGC 1 cut(s) 401
Csp6I GTAC 1 cut(s) 382
CspAI ACCGGT 1 cut(s) 455
CspCI CAANNNNNGTGG 2 cut(s) 400, 435
CviAII CATG 3 cut(s) 37, 290, 558
CviJI RGCY 5 cut(s) 30, 48, 68, 179, 308
CviKI_1 RGCY 5 cut(s) 30, 48, 68, 179, 308
CviQI GTAC 1 cut(s) 382
DdeI CTNAG 4 cut(s) 31, 49, 55, 429
DpnI GATC 3 cut(s) 318, 498, 543
DpnII GATC 3 cut(s) 316, 496, 541
DrdI GACNNNNNNGTC 1 cut(s) 460
DseDI GACNNNNNNGTC 1 cut(s) 460
Eam1104I CTCTTC 1 cut(s) 478
EarI CTCTTC 1 cut(s) 478
EciI GGCGGA 1 cut(s) 83
Eco31I GGTCTC 1 cut(s) 446
Esp3I CGTCTC 1 cut(s) 145
FaeI CATG 3 cut(s) 40, 293, 561
FaiI YATR 9 cut(s) 38, 285, 291, 298, 368, 501, 503, 559, 624
FalI AAGNNNNNCTT 2 cut(s) 297, 329
FatI CATG 3 cut(s) 36, 289, 557
FblI GTMKAC 2 cut(s) 351, 623
Fnu4HI GCNGC 5 cut(s) 6, 97, 100, 103, 150
FokI GGATG 1 cut(s) 454
Fsp4HI GCNGC 5 cut(s) 6, 97, 100, 103, 150
FspBI CTAG 2 cut(s) 65, 594
GluI GCNGC 5 cut(s) 6, 97, 100, 103, 150
HapII CCGG 2 cut(s) 456, 480
HgaI GACGC 1 cut(s) 401
Hin1II CATG 3 cut(s) 40, 293, 561
HincII GTYRAC 1 cut(s) 340
HindII GTYRAC 1 cut(s) 340
HindIII AAGCTT 2 cut(s) 46, 306
HinfI GANTC 5 cut(s) 322, 344, 431, 461, 599
HpaI GTTAAC 1 cut(s) 340
HpaII CCGG 2 cut(s) 456, 480
HphI GGTGA 5 cut(s) 121, 201, 429, 470, 621
Hpy166II GTNNAC 4 cut(s) 340, 352, 404, 624
Hpy188I TCNGA 1 cut(s) 321
Hpy188III TCNNGA 3 cut(s) 314, 326, 449
Hpy8I GTNNAC 4 cut(s) 340, 352, 404, 624
Hpy99I CGWCG 2 cut(s) 395, 637
HpyAV CCTTC 1 cut(s) 532
HpyCH4III ACNGT 3 cut(s) 139, 441, 633
HpyCH4IV ACGT 1 cut(s) 445
HpyF10VI GCNNNNNNNGC 1 cut(s) 102
HpyF3I CTNAG 4 cut(s) 31, 49, 55, 429
HpySE526I ACGT 1 cut(s) 445
Hsp92II CATG 3 cut(s) 40, 293, 561
KspAI GTTAAC 1 cut(s) 340
Kzo9I GATC 3 cut(s) 316, 496, 541
LpnPI CCDG 6 cut(s) 237, 441, 469, 493, 561, 597
Lsp1109I GCAGC 1 cut(s) 17
MaeI CTAG 2 cut(s) 65, 594
MaeII ACGT 1 cut(s) 445
MaeIII GTNAC 1 cut(s) 441
MalI GATC 3 cut(s) 318, 498, 543
MboI GATC 3 cut(s) 316, 496, 541
MboII GAAGA 7 cut(s) 219, 222, 426, 465, 468, 497, 500
MflI RGATCY 1 cut(s) 541
MluCI AATT 1 cut(s) 223
MlyI GAGTC 2 cut(s) 440, 470
MmeI TCCRAC 1 cut(s) 293
MnlI CCTC 4 cut(s) 125, 131, 252, 481
MseI TTAA 3 cut(s) 44, 339, 527
MslI CAYNNNNRTG 1 cut(s) 634
MspCI CTTAAG 1 cut(s) 43
MspI CCGG 2 cut(s) 456, 480
MwoI GCNNNNNNNGC 1 cut(s) 102
NdeII GATC 3 cut(s) 316, 496, 541
NlaIII CATG 3 cut(s) 40, 293, 561
NmuCI GTSAC 1 cut(s) 441
NspI RCATGY 1 cut(s) 561
OliI CACNNNNGTG 1 cut(s) 634
PaeI GCATGC 1 cut(s) 561
PfeI GAWTC 3 cut(s) 322, 344, 599
PinAI ACCGGT 1 cut(s) 455
PkrI GCNGC 5 cut(s) 7, 98, 101, 104, 151
PleI GAGTC 2 cut(s) 439, 469
PpsI GAGTC 2 cut(s) 439, 469
PsiI TTATAA 1 cut(s) 285
PsrI GAACNNNNNNTAC 2 cut(s) 285, 317
PsuI RGATCY 1 cut(s) 541
RsaI GTAC 1 cut(s) 383
RsaNI GTAC 1 cut(s) 382
RseI CAYNNNNRTG 1 cut(s) 634
SaqAI TTAA 3 cut(s) 44, 339, 527
SatI GCNGC 5 cut(s) 6, 97, 100, 103, 150
Sau3AI GATC 3 cut(s) 316, 496, 541
SchI GAGTC 2 cut(s) 440, 470
SetI ASST 7 cut(s) 32, 50, 70, 123, 310, 448, 550
SfcI CTRYAG 1 cut(s) 348
SmiMI CAYNNNNRTG 1 cut(s) 634
SmlI CTYRAG 2 cut(s) 43, 449
SmoI CTYRAG 2 cut(s) 43, 449
SphI GCATGC 1 cut(s) 561
Sse9I AATT 1 cut(s) 223
SsiI CCGC 6 cut(s) 94, 97, 100, 103, 147, 150
SspMI CTAG 2 cut(s) 65, 594
TaaI ACNGT 3 cut(s) 139, 441, 633
TaiI ACGT 1 cut(s) 448
TaqI TCGA 2 cut(s) 386, 507
TasI AATT 1 cut(s) 223
TatI WGTACW 1 cut(s) 381
TauI GCSGC 4 cut(s) 99, 102, 105, 152
TfiI GAWTC 3 cut(s) 322, 344, 599
Tru1I TTAA 3 cut(s) 44, 339, 527
Tru9I TTAA 3 cut(s) 44, 339, 527
TseFI GTSAC 1 cut(s) 441
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 441
TspDTI ATGAA 3 cut(s) 306, 349, 551
Vha464I CTTAAG 1 cut(s) 43
XceI RCATGY 1 cut(s) 561
XmiI GTMKAC 2 cut(s) 351, 623
XspI CTAG 2 cut(s) 65, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.