pycom15g16710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0016663
Physical Location & Seq
Forward (+)
11725643 .. 11726472
830 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g16710.2

Sequence Viewer

Length: 780 bp
ATGAAGGGCACGTCGAAGGTGATAATGGGGGCCACACTGGTGATGGTGGTGACCCTCGCCATAGTCTTAGGCTTGATCTTGGTGCTGCTGGCCGAGCTCTACTGCTCACTCCTCCTCCGCCGACGCCAGCACAAAACCAACAGCTACTCCAACATCGTCGCTGACTCTGCAGCCGCTCCTCATCTGCCCTCAACACAGCAGTCTCAAGACCACCTAACCGGCCCTTCTCTCGGCAGCTTCTTAGGCATTCTTTGCGCTCCGAGAAGCTTCCTTTCCCTACCGGTTTCTTCCAGAGAAGAATACTGTGCGGTTACGAAGAAGCAGCACTCTCAGCTCCTCCAAGTTTTCGACATCCCGGTCCAAAACCAAGAAATGTTAACAAACACATCTCCCTGCCATATAGGGATAATTATGTCAATCCCCTCCCCATCAATTTCTTTTGTAACTTCCCCGCAACCAACCCCAGATGACAAAATTAGTCCCAGTCACAGTGCTAATTGTAACGAAAAAGCTGGTGGCGGCAGCAGAGGTTGCGGGGGTGGAGCTCGGCAGGGCAGGCGGAACAAACACTCCTTTCCAAACGCCGGACATGTCGCCATCAAGGATGGAAATGGGGGGTTCTTCTTCTTCAAGCTCCCGGTACGAAGAGGTTGCGTAACCAACCCCCTCAGGTCCGTCAAACCCAATTACGACGCATCCTTTGACTCCGTTGAAGAAGCACCCTGCGGAGGCTTGCTCTGTTTCTCTCAGGGATGCAAGGTCTCTAGGCACTTCGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

260

Amino Acids

27.71

Weight (kDa)

9.27

Isoelectric Point (pI)

61.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016663)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29300 AT3G29300
fragaria_vesca FvH4_1g04931
malus_domestica MD02G1047900.v1.1
prunus_persica Prupe.7G230300_v2.0.a1
pyrus_communis pycom15g16710
rosa_chinensis RchiOBHm_Chr2g0090531
rosa_laevigata RLG00000016120
rosa_multiflora Rmu_sc0004514.1_g000027
rosa_roxburghii Rroxscaffold_2G00151060
rosa_rugosa Rorug02G0008900
rosa_samantha Rh2AG054100 Rh2DG054300
rosa_wichuraiana Rw2G004770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 356
AccBSI CCGCTC 1 cut(s) 176
AciI CCGC 8 cut(s) 118, 174, 308, 452, 519, 534, 559, 726
AcoI YGGCCR 1 cut(s) 90
AcyI GRCGYC 1 cut(s) 124
AfaI GTAC 1 cut(s) 642
AfiI CCNNNNNNNGG 3 cut(s) 230, 584, 728
AflIII ACRYGT 1 cut(s) 589
AgeI ACCGGT 1 cut(s) 280
AgsI TTSAA 2 cut(s) 631, 713
AjiI CACGTC 1 cut(s) 12
AleI CACNNNNGTG 1 cut(s) 38
AloI GAACNNNNNNTCC 2 cut(s) 554, 586
AluBI AGCT 8 cut(s) 97, 144, 237, 267, 334, 512, 545, 634
AluI AGCT 8 cut(s) 97, 144, 237, 267, 334, 512, 545, 634
Alw21I GWGCWC 2 cut(s) 99, 547
Alw26I GTCTC 2 cut(s) 207, 766
AoxI GGCC 3 cut(s) 30, 90, 220
ApeKI GCWGC 5 cut(s) 85, 170, 234, 322, 522
ArsI GACNNNNNNTTYG 2 cut(s) 683, 715
AsiGI ACCGGT 1 cut(s) 280
AspLEI GCGC 1 cut(s) 257
AspS9I GGNCC 4 cut(s) 30, 221, 358, 672
AsuC2I CCSGG 2 cut(s) 356, 638
AsuHPI GGTGA 3 cut(s) 31, 52, 61
AvaII GGWCC 2 cut(s) 358, 672
AxyI CCTNAGG 1 cut(s) 668
BaeGI GKGCMC 1 cut(s) 11
BanII GRGCYC 2 cut(s) 99, 547
Bbv12I GWGCWC 2 cut(s) 99, 547
BbvI GCAGC 5 cut(s) 72, 182, 246, 334, 534
BccI CCATC 4 cut(s) 37, 436, 599, 605
BcgI CGANNNNNNTGC 2 cut(s) 633, 667
BcnI CCSGG 2 cut(s) 356, 638
BcoDI GTCTC 2 cut(s) 207, 766
BfaI CTAG 1 cut(s) 765
BfmI CTRYAG 1 cut(s) 168
BisI GCNGC 7 cut(s) 86, 171, 174, 235, 323, 520, 523
BlsI GCNGC 7 cut(s) 87, 172, 175, 236, 324, 521, 524
Bme1390I CCNGG 2 cut(s) 356, 638
Bme18I GGWCC 2 cut(s) 358, 672
BmgBI CACGTC 1 cut(s) 12
BmgT120I GGNCC 4 cut(s) 30, 221, 358, 672
BmiI GGNNCC 1 cut(s) 31
BmrFI CCNGG 2 cut(s) 356, 638
BmrI ACTGGG 1 cut(s) 477
BmsI GCATC 2 cut(s) 704, 743
BmuI ACTGGG 1 cut(s) 477
BplI GAGNNNNNCTC 2 cut(s) 720, 752
BpuEI CTTGAG 1 cut(s) 189
BpuMI CCSGG 2 cut(s) 356, 638
BsaHI GRCGYC 1 cut(s) 124
BsaI GGTCTC 1 cut(s) 766
BsaWI WCCGGW 1 cut(s) 280
BsaXI ACNNNNNCTCC 6 cut(s) 99, 129, 131, 161, 554, 584
Bsc4I CCNNNNNNNGG 3 cut(s) 230, 584, 728
Bse118I RCCGGY 2 cut(s) 218, 280
Bse1I ACTGG 2 cut(s) 42, 483
Bse21I CCTNAGG 1 cut(s) 668
BseGI GGATG 4 cut(s) 351, 610, 695, 758
BseLI CCNNNNNNNGG 3 cut(s) 230, 584, 728
BseMII CTCAG 3 cut(s) 344, 682, 761
BseNI ACTGG 2 cut(s) 42, 483
BseRI GAGGAG 4 cut(s) 101, 104, 168, 326
BseSI GKGCMC 1 cut(s) 11
BseXI GCAGC 5 cut(s) 72, 182, 246, 334, 534
BshFI GGCC 3 cut(s) 32, 92, 222
BshTI ACCGGT 1 cut(s) 280
BsiHKAI GWGCWC 2 cut(s) 99, 547
BsiSI CCGG 5 cut(s) 219, 281, 356, 585, 638
BslFI GGGAC 1 cut(s) 465
BslI CCNNNNNNNGG 3 cut(s) 230, 584, 728
BsmAI GTCTC 2 cut(s) 207, 766
BsmFI GGGAC 1 cut(s) 465
BsmI GAATGC 1 cut(s) 246
BsnI GGCC 3 cut(s) 32, 92, 222
Bso31I GGTCTC 1 cut(s) 766
Bsp1286I GDGCHC 3 cut(s) 11, 99, 547
Bsp143I GATC 1 cut(s) 75
BspACI CCGC 8 cut(s) 118, 174, 308, 452, 519, 534, 559, 726
BspANI GGCC 3 cut(s) 32, 92, 222
BspCNI CTCAG 3 cut(s) 343, 681, 760
BspLI GGNNCC 1 cut(s) 31
BspMAI CTGCAG 1 cut(s) 172
BspTNI GGTCTC 1 cut(s) 766
BsrBI CCGCTC 1 cut(s) 176
BsrFI RCCGGY 2 cut(s) 218, 280
BsrI ACTGG 2 cut(s) 42, 483
BssAI RCCGGY 2 cut(s) 218, 280
BssMI GATC 1 cut(s) 75
BssNI GRCGYC 1 cut(s) 124
Bst4CI ACNGT 2 cut(s) 305, 491
Bst6I CTCTTC 1 cut(s) 640
BstACI GRCGYC 1 cut(s) 124
BstAPI GCANNNNNTGC 2 cut(s) 252, 531
BstC8I GCNNGC 4 cut(s) 90, 128, 557, 734
BstDEI CTNAG 5 cut(s) 67, 241, 330, 668, 747
BstEII GGTNACC 1 cut(s) 49
BstF5I GGATG 4 cut(s) 351, 610, 695, 758
BstHHI GCGC 1 cut(s) 257
BstKTI GATC 1 cut(s) 78
BstMAI GTCTC 2 cut(s) 207, 766
BstMBI GATC 1 cut(s) 75
BstMWI GCNNNNNNNGC 7 cut(s) 94, 167, 243, 252, 331, 531, 556
BstNSI RCATGY 1 cut(s) 593
BstPI GGTNACC 1 cut(s) 49
BstSCI CCNGG 2 cut(s) 354, 636
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 1 cut(s) 11
BstV1I GCAGC 5 cut(s) 72, 182, 246, 334, 534
Bsu36I CCTNAGG 1 cut(s) 668
BsuRI GGCC 3 cut(s) 32, 92, 222
BtrI CACGTC 1 cut(s) 12
BtsCI GGATG 4 cut(s) 351, 610, 695, 758
BtsIMutI CAGTG 2 cut(s) 35, 496
Cac8I GCNNGC 4 cut(s) 90, 128, 557, 734
CfoI GCGC 1 cut(s) 257
Cfr10I RCCGGY 2 cut(s) 218, 280
Cfr13I GGNCC 4 cut(s) 30, 221, 358, 672
CseI GACGC 2 cut(s) 132, 701
Csp6I GTAC 1 cut(s) 641
CspAI ACCGGT 1 cut(s) 280
CviAII CATG 1 cut(s) 590
CviQI GTAC 1 cut(s) 641
DdeI CTNAG 5 cut(s) 67, 241, 330, 668, 747
DpnI GATC 1 cut(s) 77
DpnII GATC 1 cut(s) 75
DrdI GACNNNNNNGTC 1 cut(s) 356
DseDI GACNNNNNNGTC 1 cut(s) 356
EaeI YGGCCR 1 cut(s) 90
Eam1104I CTCTTC 1 cut(s) 640
EarI CTCTTC 1 cut(s) 640
EciI GGCGGA 2 cut(s) 107, 574
Ecl136II GAGCTC 2 cut(s) 97, 545
Eco24I GRGCYC 2 cut(s) 99, 547
Eco31I GGTCTC 1 cut(s) 766
Eco47I GGWCC 2 cut(s) 358, 672
Eco53kI GAGCTC 2 cut(s) 97, 545
Eco81I CCTNAGG 1 cut(s) 668
Eco91I GGTNACC 1 cut(s) 49
EcoICRI GAGCTC 2 cut(s) 97, 545
EcoO65I GGTNACC 1 cut(s) 49
EcoT38I GRGCYC 2 cut(s) 99, 547
FaeI CATG 1 cut(s) 593
FaiI YATR 5 cut(s) 62, 399, 401, 413, 591
FaqI GGGAC 1 cut(s) 465
FatI CATG 1 cut(s) 589
FauI CCCGC 2 cut(s) 459, 527
Fnu4HI GCNGC 7 cut(s) 86, 171, 174, 235, 323, 520, 523
FokI GGATG 4 cut(s) 338, 617, 682, 765
FriOI GRGCYC 2 cut(s) 99, 547
Fsp4HI GCNGC 7 cut(s) 86, 171, 174, 235, 323, 520, 523
FspBI CTAG 1 cut(s) 765
GlaI GCGC 1 cut(s) 256
GluI GCNGC 7 cut(s) 86, 171, 174, 235, 323, 520, 523
HaeIII GGCC 3 cut(s) 32, 92, 222
HapII CCGG 5 cut(s) 219, 281, 356, 585, 638
HgaI GACGC 2 cut(s) 132, 701
HhaI GCGC 1 cut(s) 257
Hin1I GRCGYC 1 cut(s) 124
Hin1II CATG 1 cut(s) 593
Hin6I GCGC 1 cut(s) 255
HinP1I GCGC 1 cut(s) 255
HincII GTYRAC 1 cut(s) 378
HindII GTYRAC 1 cut(s) 378
HindIII AAGCTT 1 cut(s) 265
HinfI GANTC 2 cut(s) 164, 704
HpaI GTTAAC 1 cut(s) 378
HpaII CCGG 5 cut(s) 219, 281, 356, 585, 638
HphI GGTGA 3 cut(s) 31, 52, 61
Hpy166II GTNNAC 1 cut(s) 378
Hpy188I TCNGA 1 cut(s) 261
Hpy188III TCNNGA 2 cut(s) 206, 291
Hpy8I GTNNAC 1 cut(s) 378
Hpy99I CGWCG 4 cut(s) 16, 126, 161, 695
HpyAV CCTTC 2 cut(s) 10, 234
HpyCH4III ACNGT 2 cut(s) 305, 491
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 2 cut(s) 170, 756
HpyF10VI GCNNNNNNNGC 7 cut(s) 94, 167, 243, 252, 331, 531, 556
HpyF3I CTNAG 5 cut(s) 67, 241, 330, 668, 747
HpySE526I ACGT 1 cut(s) 11
Hsp92I GRCGYC 1 cut(s) 124
Hsp92II CATG 1 cut(s) 593
HspAI GCGC 1 cut(s) 255
KspAI GTTAAC 1 cut(s) 378
Kzo9I GATC 1 cut(s) 75
LmnI GCTCC 5 cut(s) 181, 262, 339, 542, 639
Lsp1109I GCAGC 5 cut(s) 72, 182, 246, 334, 534
LweI GCATC 2 cut(s) 704, 743
MaeI CTAG 1 cut(s) 765
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 6 cut(s) 49, 310, 442, 485, 500, 655
MalI GATC 1 cut(s) 77
MbiI CCGCTC 1 cut(s) 176
MboI GATC 1 cut(s) 75
MboII GAAGA 8 cut(s) 279, 308, 328, 613, 616, 619, 657, 725
MhlI GDGCHC 3 cut(s) 11, 99, 547
MluCI AATT 5 cut(s) 408, 432, 474, 496, 685
MlyI GAGTC 2 cut(s) 158, 698
MmeI TCCRAC 1 cut(s) 174
MseI TTAA 1 cut(s) 377
MslI CAYNNNNRTG 1 cut(s) 38
MspI CCGG 5 cut(s) 219, 281, 356, 585, 638
MspR9I CCNGG 2 cut(s) 356, 638
Mva1269I GAATGC 1 cut(s) 246
MwoI GCNNNNNNNGC 7 cut(s) 94, 167, 243, 252, 331, 531, 556
NciI CCSGG 2 cut(s) 356, 638
NdeII GATC 1 cut(s) 75
NlaIII CATG 1 cut(s) 593
NlaIV GGNNCC 1 cut(s) 31
NmeAIII GCCGAG 3 cut(s) 118, 210, 526
NmuCI GTSAC 2 cut(s) 49, 485
NspI RCATGY 1 cut(s) 593
OliI CACNNNNGTG 1 cut(s) 38
PciI ACATGT 1 cut(s) 589
PctI GAATGC 1 cut(s) 246
PinAI ACCGGT 1 cut(s) 280
PkrI GCNGC 7 cut(s) 87, 172, 175, 236, 324, 521, 524
PleI GAGTC 2 cut(s) 158, 698
PpsI GAGTC 2 cut(s) 158, 698
PscI ACATGT 1 cut(s) 589
Psp124BI GAGCTC 2 cut(s) 99, 547
PspEI GGTNACC 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 31
PspPI GGNCC 4 cut(s) 30, 221, 358, 672
PstI CTGCAG 1 cut(s) 172
RsaI GTAC 1 cut(s) 642
RsaNI GTAC 1 cut(s) 641
RseI CAYNNNNRTG 1 cut(s) 38
SacI GAGCTC 2 cut(s) 99, 547
SaqAI TTAA 1 cut(s) 377
SatI GCNGC 7 cut(s) 86, 171, 174, 235, 323, 520, 523
Sau3AI GATC 1 cut(s) 75
Sau96I GGNCC 4 cut(s) 30, 221, 358, 672
SchI GAGTC 2 cut(s) 158, 698
ScrFI CCNGG 2 cut(s) 356, 638
SduI GDGCHC 3 cut(s) 11, 99, 547
SfaNI GCATC 2 cut(s) 704, 743
SfcI CTRYAG 1 cut(s) 168
SinI GGWCC 2 cut(s) 358, 672
SmiMI CAYNNNNRTG 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 204
SmoI CTYRAG 1 cut(s) 204
Sse9I AATT 5 cut(s) 408, 432, 474, 496, 685
SsiI CCGC 8 cut(s) 118, 174, 308, 452, 519, 534, 559, 726
SspMI CTAG 1 cut(s) 765
SstI GAGCTC 2 cut(s) 99, 547
StyD4I CCNGG 2 cut(s) 354, 636
TaaI ACNGT 2 cut(s) 305, 491
TaiI ACGT 1 cut(s) 14
TaqI TCGA 2 cut(s) 14, 348
TasI AATT 5 cut(s) 408, 432, 474, 496, 685
TauI GCSGC 2 cut(s) 176, 522
Tru1I TTAA 1 cut(s) 377
Tru9I TTAA 1 cut(s) 377
TscAI CASTG 2 cut(s) 42, 496
TseFI GTSAC 2 cut(s) 49, 485
TseI GCWGC 5 cut(s) 85, 170, 234, 322, 522
Tsp45I GTSAC 2 cut(s) 49, 485
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 664, 697
TspRI CASTG 2 cut(s) 42, 496
VpaK11BI GGWCC 2 cut(s) 358, 672
XceI RCATGY 1 cut(s) 593
XcmI CCANNNNNNNNNTGG 1 cut(s) 40
XspI CTAG 1 cut(s) 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.