Rh2DG054300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0016663
Physical Location & Seq
Forward (+)
3927749 .. 3928612
864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG054300.1

Sequence Viewer

Length: 864 bp
ATGAAGGGCACATCCAAAGTGATAATGGGGGCAACGCTGGTAATGGTGGTGAGCCTTGCCATAGTCTTGGGCTTAATCTTGGTTCTCCTAGCTGAGCTATACTGTTCACTCTTGCTCCGCCGCAGGCGTCAGCACAAAACCGACAGAAACAACTCCATCGTCAACACCGACCTGTCCACCACCGCCGCCTCAGCCACCGAAGCAGCCACCACCACCTCTGCCGAGCCCTCATTACAACCCCAAGGCCCTCCTCTAGGCAGCTTTTTAGGCGTTCTTCGAGCTCCGAGAAGCTTCCTCTTCCCATCATGCAAAGAAGAGTACAATGCAGAACCAAAGAAGCAACAACACTGTCACCTCCACCACGTTCTCGACATCCCAGACCAAGAAATATCAAACGAATCACCATCTATTTCCTTAGCAAATTCACCACAGCCGGCGCAACGAGACCCAGTTCAAGCTGGTACTACTCCAAACACTGCCGCTGCTGCCGGAGAAGATCATTTGGTATACATTTCCAATCCGATATACGACAACGAAGCAAACAGAGCTAGCAGCAGCACTACTACAGGAGCAAACACTCCCTTTGAAACTCCGGACACATCGCCTTCAAGACTTGAAATGGGGGGCTCTACTTCTAGCTCCGGTGAAGATAACGATGAGGTTGCACAACCAACTCCATCCGGTTCTGGACCTTCAAGCCCAACCACACCTCCTCTAACTCCAATGAAGAAGCTACCCAAAGAGGCATGCTCTGTTTCTCTCAGAGACGCAAGGTCTCTAGGAACTTCAGGTAGTGATTCCAACACTAACAATGGTAACTCATCCTCATCCTCAGGTTCCCCTTGTACTTCTCCTTCATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

287

Amino Acids

30.06

Weight (kDa)

5.52

Isoelectric Point (pI)

60.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016663)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29300 AT3G29300
fragaria_vesca FvH4_1g04931
malus_domestica MD02G1047900.v1.1
prunus_persica Prupe.7G230300_v2.0.a1
pyrus_communis pycom15g16710
rosa_chinensis RchiOBHm_Chr2g0090531
rosa_laevigata RLG00000016120
rosa_multiflora Rmu_sc0004514.1_g000027
rosa_roxburghii Rroxscaffold_2G00151060
rosa_rugosa Rorug02G0008900
rosa_samantha Rh2AG054100 Rh2DG054300
rosa_wichuraiana Rw2G004770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 507
AccIII TCCGGA 1 cut(s) 592
AciI CCGC 5 cut(s) 118, 121, 183, 186, 480
AcsI RAATTY 1 cut(s) 421
AcuI CTGAAG 1 cut(s) 771
AcyI GRCGYC 1 cut(s) 127
AfaI GTAC 3 cut(s) 320, 463, 847
AfiI CCNNNNNNNGG 1 cut(s) 254
AgsI TTSAA 5 cut(s) 455, 587, 609, 617, 696
AhdI GACNNNNNGTC 1 cut(s) 772
AluBI AGCT 9 cut(s) 92, 97, 261, 281, 291, 458, 548, 639, 733
AluI AGCT 9 cut(s) 92, 97, 261, 281, 291, 458, 548, 639, 733
Alw21I GWGCWC 1 cut(s) 283
Alw26I GTCTC 3 cut(s) 438, 759, 780
Aor13HI TCCGGA 1 cut(s) 592
AoxI GGCC 1 cut(s) 244
ApeKI GCWGC 6 cut(s) 203, 258, 482, 485, 552, 555
ApoI RAATTY 1 cut(s) 421
AspLEI GCGC 1 cut(s) 439
AspS9I GGNCC 2 cut(s) 245, 689
AsuHPI GGTGA 5 cut(s) 61, 344, 393, 417, 656
AsuNHI GCTAGC 1 cut(s) 548
AvaII GGWCC 1 cut(s) 689
AxyI CCTNAGG 1 cut(s) 832
BaeGI GKGCMC 1 cut(s) 11
BanII GRGCYC 3 cut(s) 228, 283, 629
BarI GAAGNNNNNNTAC 1 cut(s) 838
Bbv12I GWGCWC 1 cut(s) 283
BbvCI CCTCAGC 1 cut(s) 190
BbvI GCAGC 6 cut(s) 215, 270, 469, 472, 564, 567
BccI CCATC 4 cut(s) 164, 310, 412, 685
BcgI CGANNNNNNTGC 2 cut(s) 644, 678
BcoDI GTCTC 3 cut(s) 438, 759, 780
BfaI CTAG 5 cut(s) 89, 254, 549, 636, 779
BfmI CTRYAG 1 cut(s) 564
BisI GCNGC 9 cut(s) 121, 186, 204, 259, 480, 483, 486, 553, 556
BlpI GCTNAGC 1 cut(s) 93
BlsI GCNGC 9 cut(s) 122, 187, 205, 260, 481, 484, 487, 554, 557
Bme18I GGWCC 1 cut(s) 689
BmeRI GACNNNNNGTC 1 cut(s) 772
BmgT120I GGNCC 2 cut(s) 245, 689
BmiI GGNNCC 1 cut(s) 838
BmrI ACTGGG 1 cut(s) 443
BmtI GCTAGC 1 cut(s) 552
BmuI ACTGGG 1 cut(s) 443
BplI GAGNNNNNCTC 2 cut(s) 734, 766
Bpu10I CCTNAGC 2 cut(s) 190, 415
Bpu1102I GCTNAGC 1 cut(s) 93
BsaHI GRCGYC 1 cut(s) 127
BsaI GGTCTC 2 cut(s) 438, 780
BsaJI CCNNGG 1 cut(s) 241
BsaWI WCCGGW 3 cut(s) 592, 641, 680
BsaXI ACNNNNNCTCC 4 cut(s) 99, 129, 694, 724
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse118I RCCGGY 1 cut(s) 433
Bse1I ACTGG 1 cut(s) 449
Bse21I CCTNAGG 1 cut(s) 832
BseAI TCCGGA 1 cut(s) 592
BseDI CCNNGG 1 cut(s) 241
BseGI GGATG 5 cut(s) 11, 372, 677, 821, 827
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMII CTCAG 4 cut(s) 84, 204, 775, 846
BseNI ACTGG 1 cut(s) 449
BseRI GAGGAG 2 cut(s) 240, 702
BseSI GKGCMC 1 cut(s) 11
BseXI GCAGC 6 cut(s) 215, 270, 469, 472, 564, 567
BshFI GGCC 1 cut(s) 246
BsiHKAI GWGCWC 1 cut(s) 283
BsiSI CCGG 5 cut(s) 434, 489, 593, 642, 681
BslI CCNNNNNNNGG 1 cut(s) 254
BsmAI GTCTC 3 cut(s) 438, 759, 780
BsmBI CGTCTC 1 cut(s) 759
BsnI GGCC 1 cut(s) 246
Bso31I GGTCTC 2 cut(s) 438, 780
Bsp1286I GDGCHC 4 cut(s) 11, 228, 283, 629
Bsp13I TCCGGA 1 cut(s) 592
Bsp143I GATC 1 cut(s) 496
Bsp1720I GCTNAGC 1 cut(s) 93
BspACI CCGC 5 cut(s) 118, 121, 183, 186, 480
BspANI GGCC 1 cut(s) 246
BspCNI CTCAG 4 cut(s) 85, 203, 774, 845
BspEI TCCGGA 1 cut(s) 592
BspLI GGNNCC 1 cut(s) 838
BspOI GCTAGC 1 cut(s) 552
BspTNI GGTCTC 2 cut(s) 438, 780
BsrFI RCCGGY 1 cut(s) 433
BsrI ACTGG 1 cut(s) 449
BssAI RCCGGY 1 cut(s) 433
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 1 cut(s) 496
BssNAI GTATAC 1 cut(s) 508
BssNI GRCGYC 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 241
Bst1107I GTATAC 1 cut(s) 508
Bst4CI ACNGT 2 cut(s) 104, 350
Bst6I CTCTTC 2 cut(s) 302, 309
BstACI GRCGYC 1 cut(s) 127
BstC8I GCNNGC 4 cut(s) 125, 435, 550, 748
BstDEI CTNAG 5 cut(s) 93, 190, 415, 761, 832
BstENI CCTNNNNNAGG 1 cut(s) 252
BstF5I GGATG 5 cut(s) 11, 372, 677, 821, 827
BstHHI GCGC 1 cut(s) 439
BstKTI GATC 1 cut(s) 499
BstMAI GTCTC 3 cut(s) 438, 759, 780
BstMBI GATC 1 cut(s) 496
BstMWI GCNNNNNNNGC 5 cut(s) 191, 200, 267, 485, 545
BstNSI RCATGY 1 cut(s) 750
BstSFI CTRYAG 1 cut(s) 564
BstSLI GKGCMC 1 cut(s) 11
BstV1I GCAGC 6 cut(s) 215, 270, 469, 472, 564, 567
BstXI CCANNNNNNTGG 1 cut(s) 67
BstZ17I GTATAC 1 cut(s) 508
Bsu36I CCTNAGG 1 cut(s) 832
BsuRI GGCC 1 cut(s) 246
BtgZI GCGATG 1 cut(s) 585
BtsCI GGATG 5 cut(s) 11, 372, 677, 821, 827
BtsI GCAGTG 1 cut(s) 474
BtsIMutI CAGTG 2 cut(s) 346, 474
Cac8I GCNNGC 4 cut(s) 125, 435, 550, 748
CfoI GCGC 1 cut(s) 439
Cfr10I RCCGGY 1 cut(s) 433
Cfr13I GGNCC 2 cut(s) 245, 689
CseI GACGC 2 cut(s) 116, 776
Csp6I GTAC 3 cut(s) 319, 462, 846
CviAII CATG 3 cut(s) 306, 747, 858
CviQI GTAC 3 cut(s) 319, 462, 846
DdeI CTNAG 5 cut(s) 93, 190, 415, 761, 832
DpnI GATC 1 cut(s) 498
DpnII GATC 1 cut(s) 496
DriI GACNNNNNGTC 1 cut(s) 772
Eam1104I CTCTTC 2 cut(s) 302, 309
Eam1105I GACNNNNNGTC 1 cut(s) 772
EarI CTCTTC 2 cut(s) 302, 309
EciI GGCGGA 1 cut(s) 107
Ecl136II GAGCTC 1 cut(s) 281
Eco130I CCWWGG 1 cut(s) 241
Eco24I GRGCYC 3 cut(s) 228, 283, 629
Eco31I GGTCTC 2 cut(s) 438, 780
Eco47I GGWCC 1 cut(s) 689
Eco53kI GAGCTC 1 cut(s) 281
Eco57I CTGAAG 1 cut(s) 771
Eco81I CCTNAGG 1 cut(s) 832
EcoICRI GAGCTC 1 cut(s) 281
EcoNI CCTNNNNNAGG 1 cut(s) 252
EcoO109I RGGNCCY 1 cut(s) 245
EcoT14I CCWWGG 1 cut(s) 241
EcoT38I GRGCYC 3 cut(s) 228, 283, 629
ErhI CCWWGG 1 cut(s) 241
Esp3I CGTCTC 1 cut(s) 759
FaeI CATG 3 cut(s) 309, 750, 861
FaiI YATR 7 cut(s) 62, 100, 307, 508, 526, 748, 859
FatI CATG 3 cut(s) 305, 746, 857
FblI GTMKAC 1 cut(s) 507
Fnu4HI GCNGC 9 cut(s) 121, 186, 204, 259, 480, 483, 486, 553, 556
FokI GGATG 4 cut(s) 359, 664, 808, 814
FriOI GRGCYC 3 cut(s) 228, 283, 629
Fsp4HI GCNGC 9 cut(s) 121, 186, 204, 259, 480, 483, 486, 553, 556
FspBI CTAG 5 cut(s) 89, 254, 549, 636, 779
GlaI GCGC 1 cut(s) 438
GluI GCNGC 9 cut(s) 121, 186, 204, 259, 480, 483, 486, 553, 556
HaeIII GGCC 1 cut(s) 246
HapII CCGG 5 cut(s) 434, 489, 593, 642, 681
HgaI GACGC 2 cut(s) 116, 776
HhaI GCGC 1 cut(s) 439
Hin1I GRCGYC 1 cut(s) 127
Hin1II CATG 3 cut(s) 309, 750, 861
Hin6I GCGC 1 cut(s) 437
HinP1I GCGC 1 cut(s) 437
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HindIII AAGCTT 1 cut(s) 289
HinfI GANTC 2 cut(s) 398, 797
HpaII CCGG 5 cut(s) 434, 489, 593, 642, 681
HphI GGTGA 5 cut(s) 61, 344, 393, 417, 656
Hpy166II GTNNAC 4 cut(s) 107, 163, 177, 508
Hpy188I TCNGA 3 cut(s) 285, 522, 764
Hpy188III TCNNGA 4 cut(s) 368, 593, 609, 687
Hpy8I GTNNAC 4 cut(s) 107, 163, 177, 508
HpyAV CCTTC 3 cut(s) 615, 702, 864
HpyCH4III ACNGT 2 cut(s) 104, 350
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 3 cut(s) 309, 326, 665
HpyF10VI GCNNNNNNNGC 5 cut(s) 191, 200, 267, 485, 545
HpyF3I CTNAG 5 cut(s) 93, 190, 415, 761, 832
HpySE526I ACGT 1 cut(s) 363
Hsp92I GRCGYC 1 cut(s) 127
Hsp92II CATG 3 cut(s) 309, 750, 861
HspAI GCGC 1 cut(s) 437
Kpn2I TCCGGA 1 cut(s) 592
KroI GCCGGC 1 cut(s) 433
KroNI GCCGGC 1 cut(s) 435
Kzo9I GATC 1 cut(s) 496
LmnI GCTCC 4 cut(s) 120, 286, 569, 644
Lsp1109I GCAGC 6 cut(s) 215, 270, 469, 472, 564, 567
MaeI CTAG 5 cut(s) 89, 254, 549, 636, 779
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 2 cut(s) 350, 815
MalI GATC 1 cut(s) 498
MboI GATC 1 cut(s) 496
MboII GAAGA 6 cut(s) 266, 289, 326, 506, 659, 739
MhlI GDGCHC 4 cut(s) 11, 228, 283, 629
MluCI AATT 1 cut(s) 421
MmeI TCCRAC 1 cut(s) 825
MroI TCCGGA 1 cut(s) 592
MroNI GCCGGC 1 cut(s) 433
MseI TTAA 1 cut(s) 74
MspA1I CMGCKG 1 cut(s) 482
MspI CCGG 5 cut(s) 434, 489, 593, 642, 681
MwoI GCNNNNNNNGC 5 cut(s) 191, 200, 267, 485, 545
NaeI GCCGGC 1 cut(s) 435
NdeII GATC 1 cut(s) 496
NgoMIV GCCGGC 1 cut(s) 433
NheI GCTAGC 1 cut(s) 548
NlaIII CATG 3 cut(s) 309, 750, 861
NlaIV GGNNCC 1 cut(s) 838
NmeAIII GCCGAG 1 cut(s) 247
NmuCI GTSAC 1 cut(s) 350
NspI RCATGY 1 cut(s) 750
PaeI GCATGC 1 cut(s) 750
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PdiI GCCGGC 1 cut(s) 435
PfeI GAWTC 2 cut(s) 398, 797
PkrI GCNGC 9 cut(s) 122, 187, 205, 260, 481, 484, 487, 554, 557
Psp124BI GAGCTC 1 cut(s) 283
PspN4I GGNNCC 1 cut(s) 838
PspPI GGNCC 2 cut(s) 245, 689
RsaI GTAC 3 cut(s) 320, 463, 847
RsaNI GTAC 3 cut(s) 319, 462, 846
SacI GAGCTC 1 cut(s) 283
SaqAI TTAA 1 cut(s) 74
SatI GCNGC 9 cut(s) 121, 186, 204, 259, 480, 483, 486, 553, 556
Sau3AI GATC 1 cut(s) 496
Sau96I GGNCC 2 cut(s) 245, 689
SduI GDGCHC 4 cut(s) 11, 228, 283, 629
SfcI CTRYAG 1 cut(s) 564
SinI GGWCC 1 cut(s) 689
SphI GCATGC 1 cut(s) 750
Sse9I AATT 1 cut(s) 421
SsiI CCGC 5 cut(s) 118, 121, 183, 186, 480
SspMI CTAG 5 cut(s) 89, 254, 549, 636, 779
SstI GAGCTC 1 cut(s) 283
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 2 cut(s) 104, 350
TaiI ACGT 1 cut(s) 366
TaqI TCGA 2 cut(s) 277, 369
TasI AATT 1 cut(s) 421
TatI WGTACW 2 cut(s) 318, 845
TauI GCSGC 3 cut(s) 123, 188, 482
TfiI GAWTC 2 cut(s) 398, 797
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TscAI CASTG 2 cut(s) 353, 481
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 6 cut(s) 203, 258, 482, 485, 552, 555
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 3 cut(s) 17, 740, 846
TspRI CASTG 2 cut(s) 353, 481
VpaK11BI GGWCC 1 cut(s) 689
XagI CCTNNNNNAGG 1 cut(s) 252
XapI RAATTY 1 cut(s) 421
XceI RCATGY 1 cut(s) 750
XcmI CCANNNNNNNNNTGG 1 cut(s) 22
XmiI GTMKAC 1 cut(s) 507
XspI CTAG 5 cut(s) 89, 254, 549, 636, 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.