Rroxscaffold_2G00151060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0016663
Physical Location & Seq
Reverse (-)
88359814 .. 88360683
870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00151060.1

Sequence Viewer

Length: 870 bp
ATGAAGGGCACATCCAAAGTGATAATGGGGGCAACGCTGGTAATGGTGGTGAGCCTTGCCATAGTCTTGGGCTTAATCTTGGTTCTCCTAGCTGAGCTATACTGTTCACTCTTGCTCCGCCGCAGGCGTCAGCACAAAACCGACAGAAACAACTCCATCGTCAACACCGACCTGTCCACCACCGCCGCCTCCACCACCGAAGCAGCCACCACCACCACCACCTCTGCCGAGCCCTCATTACAACCCCAAGGCCCTCCTCTAGGCAGCTTTTTAGGCGTTCTTCGAGCTCCGAGAAGCTTCCTCTTCCCATCATGCAAAGAAGAGTACAATGCAGAACCAAAGAAGCAACAACACTGTCACCTCCACCACGTTCTCGACATCCCAAACCAAGAAATATCAAACGAATCACCATCCATTTCCTTAGCAAATTCACCACAGCCAGCGCAAGGAGACCCAGTTCAAGCTGGTACTACTCCAAACACTGCCGCTGCTGCCGGAGAAGATCATTTGGTATACATTTCCAATCCGATATACGACAACGAAGCAAACAGAGCTAGCAGCAGCACTACTACAGGAGCAAACACTCCCTTTGAAACTCCGGACACATCGCCTTCAAGACTTGAAATGGGGGGCTCTACTTCTAGCTCCGGTGAAGATAACGATGAGGTTGCACAACCAACTCCATCCGGTTCTGGACCTTCAAGCCCAACCACACCTCCTCTAACTCCAATGAAGAAGCTACCCAAAGAGGCATGCTCTGTTTCTCTCAGAGACGCAAGGTCTCTAGGAACTTCAGGTAGTGATTCCAACACTAACAATGGTAACTCATCCTCATCCTCAGGTTCTCCTTGTACTTCTCCTTCATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

289

Amino Acids

30.19

Weight (kDa)

5.51

Isoelectric Point (pI)

59.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016663)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29300 AT3G29300
fragaria_vesca FvH4_1g04931
malus_domestica MD02G1047900.v1.1
prunus_persica Prupe.7G230300_v2.0.a1
pyrus_communis pycom15g16710
rosa_chinensis RchiOBHm_Chr2g0090531
rosa_laevigata RLG00000016120
rosa_multiflora Rmu_sc0004514.1_g000027
rosa_roxburghii Rroxscaffold_2G00151060
rosa_rugosa Rorug02G0008900
rosa_samantha Rh2AG054100 Rh2DG054300
rosa_wichuraiana Rw2G004770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 513
AccIII TCCGGA 1 cut(s) 598
AciI CCGC 5 cut(s) 118, 121, 183, 186, 486
AcsI RAATTY 1 cut(s) 427
AcuI CTGAAG 1 cut(s) 777
AcyI GRCGYC 1 cut(s) 127
AfaI GTAC 3 cut(s) 326, 469, 853
AfiI CCNNNNNNNGG 2 cut(s) 260, 446
AgsI TTSAA 5 cut(s) 461, 593, 615, 623, 702
AhdI GACNNNNNGTC 1 cut(s) 778
AloI GAACNNNNNNTCC 2 cut(s) 441, 473
AluBI AGCT 9 cut(s) 92, 97, 267, 287, 297, 464, 554, 645, 739
AluI AGCT 9 cut(s) 92, 97, 267, 287, 297, 464, 554, 645, 739
Alw21I GWGCWC 1 cut(s) 289
Alw26I GTCTC 3 cut(s) 444, 765, 786
Aor13HI TCCGGA 1 cut(s) 598
AoxI GGCC 1 cut(s) 250
ApeKI GCWGC 6 cut(s) 203, 264, 488, 491, 558, 561
ApoI RAATTY 1 cut(s) 427
AspLEI GCGC 1 cut(s) 445
AspS9I GGNCC 2 cut(s) 251, 695
AsuHPI GGTGA 5 cut(s) 61, 350, 399, 423, 662
AsuNHI GCTAGC 1 cut(s) 554
AvaII GGWCC 1 cut(s) 695
AxyI CCTNAGG 1 cut(s) 838
BaeGI GKGCMC 1 cut(s) 11
BanII GRGCYC 3 cut(s) 234, 289, 635
BarI GAAGNNNNNNTAC 1 cut(s) 844
Bbv12I GWGCWC 1 cut(s) 289
BbvI GCAGC 6 cut(s) 215, 276, 475, 478, 570, 573
BccI CCATC 4 cut(s) 164, 316, 418, 691
BcgI CGANNNNNNTGC 2 cut(s) 650, 684
BcoDI GTCTC 3 cut(s) 444, 765, 786
BfaI CTAG 5 cut(s) 89, 260, 555, 642, 785
BfmI CTRYAG 1 cut(s) 570
BisI GCNGC 9 cut(s) 121, 186, 204, 265, 486, 489, 492, 559, 562
BlpI GCTNAGC 1 cut(s) 93
BlsI GCNGC 9 cut(s) 122, 187, 205, 266, 487, 490, 493, 560, 563
Bme18I GGWCC 1 cut(s) 695
BmeRI GACNNNNNGTC 1 cut(s) 778
BmgT120I GGNCC 2 cut(s) 251, 695
BmrI ACTGGG 1 cut(s) 449
BmtI GCTAGC 1 cut(s) 558
BmuI ACTGGG 1 cut(s) 449
BplI GAGNNNNNCTC 2 cut(s) 740, 772
Bpu10I CCTNAGC 1 cut(s) 421
Bpu1102I GCTNAGC 1 cut(s) 93
BsaHI GRCGYC 1 cut(s) 127
BsaI GGTCTC 2 cut(s) 444, 786
BsaJI CCNNGG 1 cut(s) 247
BsaWI WCCGGW 3 cut(s) 598, 647, 686
BsaXI ACNNNNNCTCC 6 cut(s) 99, 129, 441, 471, 700, 730
Bsc4I CCNNNNNNNGG 2 cut(s) 260, 446
Bse1I ACTGG 1 cut(s) 455
Bse21I CCTNAGG 1 cut(s) 838
BseAI TCCGGA 1 cut(s) 598
BseDI CCNNGG 1 cut(s) 247
BseGI GGATG 6 cut(s) 11, 378, 410, 683, 827, 833
BseLI CCNNNNNNNGG 2 cut(s) 260, 446
BseMII CTCAG 3 cut(s) 84, 781, 852
BseNI ACTGG 1 cut(s) 455
BseRI GAGGAG 2 cut(s) 246, 708
BseSI GKGCMC 1 cut(s) 11
BseXI GCAGC 6 cut(s) 215, 276, 475, 478, 570, 573
BshFI GGCC 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 289
BsiSI CCGG 4 cut(s) 495, 599, 648, 687
BslI CCNNNNNNNGG 2 cut(s) 260, 446
BsmAI GTCTC 3 cut(s) 444, 765, 786
BsmBI CGTCTC 1 cut(s) 765
BsnI GGCC 1 cut(s) 252
Bso31I GGTCTC 2 cut(s) 444, 786
Bsp1286I GDGCHC 4 cut(s) 11, 234, 289, 635
Bsp13I TCCGGA 1 cut(s) 598
Bsp143I GATC 1 cut(s) 502
Bsp1720I GCTNAGC 1 cut(s) 93
BspACI CCGC 5 cut(s) 118, 121, 183, 186, 486
BspANI GGCC 1 cut(s) 252
BspCNI CTCAG 3 cut(s) 85, 780, 851
BspEI TCCGGA 1 cut(s) 598
BspOI GCTAGC 1 cut(s) 558
BspTNI GGTCTC 2 cut(s) 444, 786
BsrI ACTGG 1 cut(s) 455
BssECI CCNNGG 1 cut(s) 247
BssMI GATC 1 cut(s) 502
BssNAI GTATAC 1 cut(s) 514
BssNI GRCGYC 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 247
Bst1107I GTATAC 1 cut(s) 514
Bst4CI ACNGT 2 cut(s) 104, 356
Bst6I CTCTTC 2 cut(s) 308, 315
BstACI GRCGYC 1 cut(s) 127
BstC8I GCNNGC 4 cut(s) 125, 441, 556, 754
BstDEI CTNAG 4 cut(s) 93, 421, 767, 838
BstENI CCTNNNNNAGG 1 cut(s) 258
BstF5I GGATG 6 cut(s) 11, 378, 410, 683, 827, 833
BstHHI GCGC 1 cut(s) 445
BstKTI GATC 1 cut(s) 505
BstMAI GTCTC 3 cut(s) 444, 765, 786
BstMBI GATC 1 cut(s) 502
BstMWI GCNNNNNNNGC 3 cut(s) 273, 491, 551
BstNSI RCATGY 1 cut(s) 756
BstSFI CTRYAG 1 cut(s) 570
BstSLI GKGCMC 1 cut(s) 11
BstV1I GCAGC 6 cut(s) 215, 276, 475, 478, 570, 573
BstXI CCANNNNNNTGG 1 cut(s) 67
BstZ17I GTATAC 1 cut(s) 514
Bsu36I CCTNAGG 1 cut(s) 838
BsuRI GGCC 1 cut(s) 252
BtgZI GCGATG 1 cut(s) 591
BtsCI GGATG 6 cut(s) 11, 378, 410, 683, 827, 833
BtsI GCAGTG 1 cut(s) 480
BtsIMutI CAGTG 2 cut(s) 352, 480
Cac8I GCNNGC 4 cut(s) 125, 441, 556, 754
CfoI GCGC 1 cut(s) 445
Cfr13I GGNCC 2 cut(s) 251, 695
CseI GACGC 2 cut(s) 116, 782
Csp6I GTAC 3 cut(s) 325, 468, 852
CviAII CATG 3 cut(s) 312, 753, 864
CviQI GTAC 3 cut(s) 325, 468, 852
DdeI CTNAG 4 cut(s) 93, 421, 767, 838
DpnI GATC 1 cut(s) 504
DpnII GATC 1 cut(s) 502
DriI GACNNNNNGTC 1 cut(s) 778
Eam1104I CTCTTC 2 cut(s) 308, 315
Eam1105I GACNNNNNGTC 1 cut(s) 778
EarI CTCTTC 2 cut(s) 308, 315
EciI GGCGGA 1 cut(s) 107
Ecl136II GAGCTC 1 cut(s) 287
Eco130I CCWWGG 1 cut(s) 247
Eco24I GRGCYC 3 cut(s) 234, 289, 635
Eco31I GGTCTC 2 cut(s) 444, 786
Eco47I GGWCC 1 cut(s) 695
Eco53kI GAGCTC 1 cut(s) 287
Eco57I CTGAAG 1 cut(s) 777
Eco81I CCTNAGG 1 cut(s) 838
EcoICRI GAGCTC 1 cut(s) 287
EcoNI CCTNNNNNAGG 1 cut(s) 258
EcoO109I RGGNCCY 1 cut(s) 251
EcoT14I CCWWGG 1 cut(s) 247
EcoT38I GRGCYC 3 cut(s) 234, 289, 635
ErhI CCWWGG 1 cut(s) 247
Esp3I CGTCTC 1 cut(s) 765
FaeI CATG 3 cut(s) 315, 756, 867
FaiI YATR 7 cut(s) 62, 100, 313, 514, 532, 754, 865
FatI CATG 3 cut(s) 311, 752, 863
FblI GTMKAC 1 cut(s) 513
Fnu4HI GCNGC 9 cut(s) 121, 186, 204, 265, 486, 489, 492, 559, 562
FokI GGATG 5 cut(s) 365, 397, 670, 814, 820
FriOI GRGCYC 3 cut(s) 234, 289, 635
Fsp4HI GCNGC 9 cut(s) 121, 186, 204, 265, 486, 489, 492, 559, 562
FspBI CTAG 5 cut(s) 89, 260, 555, 642, 785
GlaI GCGC 1 cut(s) 444
GluI GCNGC 9 cut(s) 121, 186, 204, 265, 486, 489, 492, 559, 562
HaeIII GGCC 1 cut(s) 252
HapII CCGG 4 cut(s) 495, 599, 648, 687
HgaI GACGC 2 cut(s) 116, 782
HhaI GCGC 1 cut(s) 445
Hin1I GRCGYC 1 cut(s) 127
Hin1II CATG 3 cut(s) 315, 756, 867
Hin6I GCGC 1 cut(s) 443
HinP1I GCGC 1 cut(s) 443
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HindIII AAGCTT 1 cut(s) 295
HinfI GANTC 2 cut(s) 404, 803
HpaII CCGG 4 cut(s) 495, 599, 648, 687
HphI GGTGA 5 cut(s) 61, 350, 399, 423, 662
Hpy166II GTNNAC 4 cut(s) 107, 163, 177, 514
Hpy188I TCNGA 3 cut(s) 291, 528, 770
Hpy188III TCNNGA 4 cut(s) 374, 599, 615, 693
Hpy8I GTNNAC 4 cut(s) 107, 163, 177, 514
HpyAV CCTTC 3 cut(s) 621, 708, 870
HpyCH4III ACNGT 2 cut(s) 104, 356
HpyCH4IV ACGT 1 cut(s) 369
HpyCH4V TGCA 3 cut(s) 315, 332, 671
HpyF10VI GCNNNNNNNGC 3 cut(s) 273, 491, 551
HpyF3I CTNAG 4 cut(s) 93, 421, 767, 838
HpySE526I ACGT 1 cut(s) 369
Hsp92I GRCGYC 1 cut(s) 127
Hsp92II CATG 3 cut(s) 315, 756, 867
HspAI GCGC 1 cut(s) 443
Kpn2I TCCGGA 1 cut(s) 598
Kzo9I GATC 1 cut(s) 502
LmnI GCTCC 4 cut(s) 120, 292, 575, 650
Lsp1109I GCAGC 6 cut(s) 215, 276, 475, 478, 570, 573
MaeI CTAG 5 cut(s) 89, 260, 555, 642, 785
MaeII ACGT 1 cut(s) 369
MaeIII GTNAC 2 cut(s) 356, 821
MalI GATC 1 cut(s) 504
MboI GATC 1 cut(s) 502
MboII GAAGA 6 cut(s) 272, 295, 332, 512, 665, 745
MhlI GDGCHC 4 cut(s) 11, 234, 289, 635
MluCI AATT 1 cut(s) 427
MmeI TCCRAC 1 cut(s) 831
MroI TCCGGA 1 cut(s) 598
MseI TTAA 1 cut(s) 74
MspA1I CMGCKG 1 cut(s) 488
MspI CCGG 4 cut(s) 495, 599, 648, 687
MwoI GCNNNNNNNGC 3 cut(s) 273, 491, 551
NdeII GATC 1 cut(s) 502
NheI GCTAGC 1 cut(s) 554
NlaIII CATG 3 cut(s) 315, 756, 867
NmeAIII GCCGAG 1 cut(s) 253
NmuCI GTSAC 1 cut(s) 356
NspI RCATGY 1 cut(s) 756
PaeI GCATGC 1 cut(s) 756
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PfeI GAWTC 2 cut(s) 404, 803
PkrI GCNGC 9 cut(s) 122, 187, 205, 266, 487, 490, 493, 560, 563
Psp124BI GAGCTC 1 cut(s) 289
PspPI GGNCC 2 cut(s) 251, 695
RsaI GTAC 3 cut(s) 326, 469, 853
RsaNI GTAC 3 cut(s) 325, 468, 852
SacI GAGCTC 1 cut(s) 289
SaqAI TTAA 1 cut(s) 74
SatI GCNGC 9 cut(s) 121, 186, 204, 265, 486, 489, 492, 559, 562
Sau3AI GATC 1 cut(s) 502
Sau96I GGNCC 2 cut(s) 251, 695
SduI GDGCHC 4 cut(s) 11, 234, 289, 635
SfcI CTRYAG 1 cut(s) 570
SinI GGWCC 1 cut(s) 695
SphI GCATGC 1 cut(s) 756
Sse9I AATT 1 cut(s) 427
SsiI CCGC 5 cut(s) 118, 121, 183, 186, 486
SspMI CTAG 5 cut(s) 89, 260, 555, 642, 785
SstI GAGCTC 1 cut(s) 289
StyI CCWWGG 1 cut(s) 247
TaaI ACNGT 2 cut(s) 104, 356
TaiI ACGT 1 cut(s) 372
TaqI TCGA 2 cut(s) 283, 375
TasI AATT 1 cut(s) 427
TatI WGTACW 2 cut(s) 324, 851
TauI GCSGC 3 cut(s) 123, 188, 488
TfiI GAWTC 2 cut(s) 404, 803
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TscAI CASTG 2 cut(s) 359, 487
TseFI GTSAC 1 cut(s) 356
TseI GCWGC 6 cut(s) 203, 264, 488, 491, 558, 561
Tsp45I GTSAC 1 cut(s) 356
TspDTI ATGAA 3 cut(s) 17, 746, 852
TspRI CASTG 2 cut(s) 359, 487
VpaK11BI GGWCC 1 cut(s) 695
XagI CCTNNNNNAGG 1 cut(s) 258
XapI RAATTY 1 cut(s) 427
XceI RCATGY 1 cut(s) 756
XcmI CCANNNNNNNNNTGG 1 cut(s) 22
XmiI GTMKAC 1 cut(s) 513
XspI CTAG 5 cut(s) 89, 260, 555, 642, 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.