MD02G1047900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0016663
Physical Location & Seq
Forward (+)
3793798 .. 3794718
921 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1047900.v1.1.491

Sequence Viewer

Length: 921 bp
ATGGGGGCCACACTGGTGATGGTGGTGAGCCTCGCCATTGTCTTAGGCTTAATCCTGGTGCTGCTGGCTGAGCTCTACTGCTCACTCTTCCTCAGCCGCCGCCAGCACAAAACCACCAGCTCCTCCAACACCGCTGCCTCCGCCGATGACTCTGCAGCCGCTACCATAGCCGCCGCCACAGCCGCTTCTGATCAGCCCTCAACACAGCAGCATCAAGAGAGTCGAGACCACCCAACTGGTCCTCCTCTCGGCAGCTTCTTGGGCATTCTTCGCGCTCCGAGAAGCTTCCTTTTCCCACCGGCGATTACTTCCAAAGAAGAAGACAATGCAGATATAAAGAAGCAGCATTCTCAGCTCCTCCACCAGGTTTTCGACATCCCGGTCCGAAACCAAGATATATTACCAAACGCATCTCCCCGCCATATAGGGGTAATTAGGTCAAGCCCCTCCCCGTCAATTTCTTTTGTAACTTCCCCACAGCCAACCCCAGAACACAAAATCACCGCCAGTCCACGTGCTAATTGTAACGAAAAAGCTGGCGCTGACGGTGGTTGTGGTGGCGGAGCTGCAGAACATTTTGTGTACATTTCCAACCCCATTTACGACAACGAAGCGATGAAAAGGGCGAGCGGAGCAAACACTCCATTCGAAACGCCGGACACGTCGCCGTCGAGGTTGGAAATGGGGGGTTCTTCTTCTTCAAGCTCCGGGGAGGAGGAGGTTGCGCAGCCGACCCCGTCTGGTCCGTCAAGCCCAACTACCACGCCTCCTTTGACTCCGATGAAGAAGCTCCCTGCGGAGGCTTGCTCTGTTTCTCTCAGAGATGCCAGGTCTCTAGGCACTTCGGGTAGTGATTCCAACAGCAACAATGGCCTCTCTTCCTCCTCCTCTGGTTCTCCTTGTACTTCTCCTTCATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

307

Amino Acids

31.76

Weight (kDa)

5.89

Isoelectric Point (pI)

67.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016663)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29300 AT3G29300
fragaria_vesca FvH4_1g04931
malus_domestica MD02G1047900.v1.1
prunus_persica Prupe.7G230300_v2.0.a1
pyrus_communis pycom15g16710
rosa_chinensis RchiOBHm_Chr2g0090531
rosa_laevigata RLG00000016120
rosa_multiflora Rmu_sc0004514.1_g000027
rosa_roxburghii Rroxscaffold_2G00151060
rosa_rugosa Rorug02G0008900
rosa_samantha Rh2AG054100 Rh2DG054300
rosa_wichuraiana Rw2G004770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 380
Acc16I TGCGCA 1 cut(s) 726
AccBSI CCGCTC 1 cut(s) 630
AccII CGCG 1 cut(s) 273
AcvI CACGTG 1 cut(s) 515
AfaI GTAC 2 cut(s) 584, 904
AfiI CCNNNNNNNGG 4 cut(s) 248, 364, 427, 799
AflIII ACRYGT 1 cut(s) 660
AgsI TTSAA 1 cut(s) 702
AjiI CACGTC 1 cut(s) 663
AjnI CCWGG 3 cut(s) 54, 363, 827
AleI CACNNNNGTG 1 cut(s) 14
AluBI AGCT 9 cut(s) 73, 120, 255, 285, 355, 536, 566, 705, 790
AluI AGCT 9 cut(s) 73, 120, 255, 285, 355, 536, 566, 705, 790
Alw21I GWGCWC 1 cut(s) 75
Alw26I GTCTC 2 cut(s) 219, 837
AoxI GGCC 2 cut(s) 6, 871
ApeKI GCWGC 8 cut(s) 61, 134, 155, 208, 252, 343, 566, 727
AspLEI GCGC 3 cut(s) 275, 542, 727
AspS9I GGNCC 4 cut(s) 6, 239, 382, 743
AsuC2I CCSGG 2 cut(s) 380, 709
AsuHPI GGTGA 3 cut(s) 28, 37, 493
AsuII TTCGAA 1 cut(s) 648
AvaII GGWCC 3 cut(s) 239, 382, 743
BanII GRGCYC 1 cut(s) 75
BarI GAAGNNNNNNTAC 1 cut(s) 895
BbrPI CACGTG 1 cut(s) 515
BbsI GAAGAC 1 cut(s) 327
Bbv12I GWGCWC 1 cut(s) 75
BbvCI CCTCAGC 1 cut(s) 92
BbvI GCAGC 8 cut(s) 48, 121, 167, 220, 264, 355, 553, 739
BccI CCATC 1 cut(s) 13
BceAI ACGGC 1 cut(s) 652
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BciT130I CCWGG 3 cut(s) 56, 365, 829
BclI TGATCA 1 cut(s) 190
BcnI CCSGG 2 cut(s) 380, 709
BcoDI GTCTC 2 cut(s) 219, 837
BfaI CTAG 1 cut(s) 836
BfmI CTRYAG 2 cut(s) 153, 567
BfoI RGCGCY 1 cut(s) 543
BlpI GCTNAGC 1 cut(s) 69
Bme1390I CCNGG 5 cut(s) 56, 365, 380, 709, 829
Bme18I GGWCC 3 cut(s) 239, 382, 743
BmgBI CACGTC 1 cut(s) 663
BmgT120I GGNCC 4 cut(s) 6, 239, 382, 743
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 5 cut(s) 56, 365, 380, 709, 829
BmsI GCATC 3 cut(s) 220, 419, 814
BpiI GAAGAC 1 cut(s) 327
BplI GAGNNNNNCTC 2 cut(s) 791, 823
Bpu10I CCTNAGC 1 cut(s) 92
Bpu1102I GCTNAGC 1 cut(s) 69
Bpu14I TTCGAA 1 cut(s) 648
BpuMI CCSGG 2 cut(s) 380, 709
BsaAI YACGTR 1 cut(s) 515
BsaI GGTCTC 2 cut(s) 219, 837
BsaJI CCNNGG 1 cut(s) 708
BsaXI ACNNNNNCTCC 4 cut(s) 226, 256, 751, 781
Bsc4I CCNNNNNNNGG 4 cut(s) 248, 364, 427, 799
Bse118I RCCGGY 1 cut(s) 298
Bse1I ACTGG 3 cut(s) 18, 241, 507
BseBI CCWGG 3 cut(s) 56, 365, 829
BseDI CCNNGG 1 cut(s) 708
BseGI GGATG 1 cut(s) 375
BseLI CCNNNNNNNGG 4 cut(s) 248, 364, 427, 799
BseMII CTCAG 4 cut(s) 60, 106, 365, 832
BseNI ACTGG 3 cut(s) 18, 241, 507
BseRI GAGGAG 7 cut(s) 112, 234, 347, 728, 731, 874, 877
BseXI GCAGC 8 cut(s) 48, 121, 167, 220, 264, 355, 553, 739
Bsh1236I CGCG 1 cut(s) 273
BshFI GGCC 2 cut(s) 8, 873
BsiHKAI GWGCWC 1 cut(s) 75
BsiSI CCGG 4 cut(s) 299, 380, 656, 708
BslI CCNNNNNNNGG 4 cut(s) 248, 364, 427, 799
BsmAI GTCTC 2 cut(s) 219, 837
BsmI GAATGC 2 cut(s) 264, 346
BsnI GGCC 2 cut(s) 8, 873
Bso31I GGTCTC 2 cut(s) 219, 837
Bsp119I TTCGAA 1 cut(s) 648
Bsp1286I GDGCHC 1 cut(s) 75
Bsp1407I TGTACA 1 cut(s) 582
Bsp143I GATC 1 cut(s) 190
Bsp1720I GCTNAGC 1 cut(s) 69
BspANI GGCC 2 cut(s) 8, 873
BspCNI CTCAG 4 cut(s) 61, 105, 364, 831
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 1 cut(s) 7
BspMAI CTGCAG 2 cut(s) 157, 571
BspT104I TTCGAA 1 cut(s) 648
BspTNI GGTCTC 2 cut(s) 219, 837
BsrBI CCGCTC 1 cut(s) 630
BsrFI RCCGGY 1 cut(s) 298
BsrGI TGTACA 1 cut(s) 582
BsrI ACTGG 3 cut(s) 18, 241, 507
BssAI RCCGGY 1 cut(s) 298
BssECI CCNNGG 1 cut(s) 708
BssMI GATC 1 cut(s) 190
Bst2UI CCWGG 3 cut(s) 56, 365, 829
Bst4CI ACNGT 1 cut(s) 548
Bst6I CTCTTC 2 cut(s) 92, 883
BstAUI TGTACA 1 cut(s) 582
BstBAI YACGTR 1 cut(s) 515
BstBI TTCGAA 1 cut(s) 648
BstC8I GCNNGC 5 cut(s) 66, 104, 538, 628, 805
BstDEI CTNAG 5 cut(s) 43, 69, 92, 351, 818
BstENI CCTNNNNNAGG 1 cut(s) 362
BstF5I GGATG 1 cut(s) 375
BstFNI CGCG 1 cut(s) 273
BstH2I RGCGCY 1 cut(s) 543
BstHHI GCGC 3 cut(s) 275, 542, 727
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 2 cut(s) 219, 837
BstMBI GATC 1 cut(s) 190
BstNI CCWGG 3 cut(s) 56, 365, 829
BstSCI CCNGG 5 cut(s) 54, 363, 378, 707, 827
BstSFI CTRYAG 2 cut(s) 153, 567
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 8 cut(s) 48, 121, 167, 220, 264, 355, 553, 739
BstV2I GAAGAC 1 cut(s) 327
BstXI CCANNNNNNTGG 1 cut(s) 236
BsuRI GGCC 2 cut(s) 8, 873
BtgZI GCGATG 1 cut(s) 629
BtrI CACGTC 1 cut(s) 663
BtsCI GGATG 1 cut(s) 375
BtsIMutI CAGTG 1 cut(s) 11
Cac8I GCNNGC 5 cut(s) 66, 104, 538, 628, 805
CfoI GCGC 3 cut(s) 275, 542, 727
Cfr10I RCCGGY 1 cut(s) 298
Cfr13I GGNCC 4 cut(s) 6, 239, 382, 743
CpoI CGGWCCG 1 cut(s) 382
CsiI ACCWGGT 1 cut(s) 363
Csp6I GTAC 2 cut(s) 583, 903
CspI CGGWCCG 1 cut(s) 382
CviAII CATG 1 cut(s) 915
CviQI GTAC 2 cut(s) 583, 903
DdeI CTNAG 5 cut(s) 43, 69, 92, 351, 818
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
DrdI GACNNNNNNGTC 1 cut(s) 380
DseDI GACNNNNNNGTC 1 cut(s) 380
Eam1104I CTCTTC 2 cut(s) 92, 883
EarI CTCTTC 2 cut(s) 92, 883
EciI GGCGGA 2 cut(s) 130, 576
Ecl136II GAGCTC 1 cut(s) 73
Eco24I GRGCYC 1 cut(s) 75
Eco31I GGTCTC 2 cut(s) 219, 837
Eco47I GGWCC 3 cut(s) 239, 382, 743
Eco53kI GAGCTC 1 cut(s) 73
Eco72I CACGTG 1 cut(s) 515
EcoICRI GAGCTC 1 cut(s) 73
EcoNI CCTNNNNNAGG 1 cut(s) 362
EcoRII CCWGG 3 cut(s) 54, 363, 827
EcoT38I GRGCYC 1 cut(s) 75
FaeI CATG 1 cut(s) 918
FaiI YATR 6 cut(s) 167, 335, 398, 423, 425, 916
FatI CATG 1 cut(s) 914
FauI CCCGC 1 cut(s) 425
FbaI TGATCA 1 cut(s) 190
FokI GGATG 1 cut(s) 362
FriOI GRGCYC 1 cut(s) 75
FspBI CTAG 1 cut(s) 836
FspI TGCGCA 1 cut(s) 726
GlaI GCGC 3 cut(s) 274, 541, 726
HaeII RGCGCY 1 cut(s) 543
HaeIII GGCC 2 cut(s) 8, 873
HapII CCGG 4 cut(s) 299, 380, 656, 708
HhaI GCGC 3 cut(s) 275, 542, 727
Hin1II CATG 1 cut(s) 918
Hin6I GCGC 3 cut(s) 273, 540, 725
HinP1I GCGC 3 cut(s) 273, 540, 725
HindIII AAGCTT 1 cut(s) 283
HinfI GANTC 4 cut(s) 149, 220, 775, 854
HpaII CCGG 4 cut(s) 299, 380, 656, 708
HphI GGTGA 3 cut(s) 28, 37, 493
Hpy166II GTNNAC 2 cut(s) 512, 583
Hpy188I TCNGA 5 cut(s) 190, 279, 386, 780, 821
Hpy188III TCNNGA 2 cut(s) 215, 224
Hpy8I GTNNAC 2 cut(s) 512, 583
Hpy99I CGWCG 2 cut(s) 667, 673
HpyAV CCTTC 1 cut(s) 921
HpyCH4III ACNGT 1 cut(s) 548
HpyCH4IV ACGT 2 cut(s) 514, 662
HpyCH4V TGCA 3 cut(s) 155, 329, 569
HpyF3I CTNAG 5 cut(s) 43, 69, 92, 351, 818
HpySE526I ACGT 2 cut(s) 514, 662
Hsp92II CATG 1 cut(s) 918
HspAI GCGC 3 cut(s) 273, 540, 725
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 7 cut(s) 125, 280, 360, 563, 632, 710, 795
Lsp1109I GCAGC 8 cut(s) 48, 121, 167, 220, 264, 355, 553, 739
LweI GCATC 3 cut(s) 220, 419, 814
MabI ACCWGGT 1 cut(s) 363
MaeI CTAG 1 cut(s) 836
MaeII ACGT 2 cut(s) 514, 662
MaeIII GTNAC 2 cut(s) 466, 524
MalI GATC 1 cut(s) 192
MbiI CCGCTC 1 cut(s) 630
MboI GATC 1 cut(s) 190
MboII GAAGA 9 cut(s) 79, 260, 329, 332, 684, 687, 690, 796, 870
MhlI GDGCHC 1 cut(s) 75
MluCI AATT 3 cut(s) 432, 456, 520
MlyI GAGTC 3 cut(s) 143, 229, 769
MmeI TCCRAC 4 cut(s) 150, 615, 657, 882
MseI TTAA 1 cut(s) 50
MslI CAYNNNNRTG 1 cut(s) 14
MspA1I CMGCKG 1 cut(s) 134
MspI CCGG 4 cut(s) 299, 380, 656, 708
MspR9I CCNGG 5 cut(s) 56, 365, 380, 709, 829
Mva1269I GAATGC 2 cut(s) 264, 346
MvaI CCWGG 3 cut(s) 56, 365, 829
MvnI CGCG 1 cut(s) 273
NciI CCSGG 2 cut(s) 380, 709
NdeII GATC 1 cut(s) 190
NlaIII CATG 1 cut(s) 918
NlaIV GGNNCC 1 cut(s) 7
NmeAIII GCCGAG 1 cut(s) 228
NsbI TGCGCA 1 cut(s) 726
NspV TTCGAA 1 cut(s) 648
OliI CACNNNNGTG 1 cut(s) 14
PcsI WCGNNNNNNNCGW 2 cut(s) 659, 668
PctI GAATGC 2 cut(s) 264, 346
PfeI GAWTC 1 cut(s) 854
PflFI GACNNNGTC 1 cut(s) 736
PleI GAGTC 3 cut(s) 143, 228, 769
PmaCI CACGTG 1 cut(s) 515
PmlI CACGTG 1 cut(s) 515
PpsI GAGTC 3 cut(s) 143, 228, 769
Ppu21I YACGTR 1 cut(s) 515
Psp124BI GAGCTC 1 cut(s) 75
Psp6I CCWGG 3 cut(s) 54, 363, 827
PspCI CACGTG 1 cut(s) 515
PspGI CCWGG 3 cut(s) 54, 363, 827
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 4 cut(s) 6, 239, 382, 743
PstI CTGCAG 2 cut(s) 157, 571
PsyI GACNNNGTC 1 cut(s) 736
RsaI GTAC 2 cut(s) 584, 904
RsaNI GTAC 2 cut(s) 583, 903
RseI CAYNNNNRTG 1 cut(s) 14
Rsr2I CGGWCCG 1 cut(s) 382
RsrII CGGWCCG 1 cut(s) 382
SacI GAGCTC 1 cut(s) 75
SaqAI TTAA 1 cut(s) 50
Sau3AI GATC 1 cut(s) 190
Sau96I GGNCC 4 cut(s) 6, 239, 382, 743
SchI GAGTC 3 cut(s) 143, 229, 769
ScrFI CCNGG 5 cut(s) 56, 365, 380, 709, 829
SduI GDGCHC 1 cut(s) 75
SexAI ACCWGGT 1 cut(s) 363
SfaNI GCATC 3 cut(s) 220, 419, 814
SfcI CTRYAG 2 cut(s) 153, 567
SfuI TTCGAA 1 cut(s) 648
SgrAI CRCCGGYG 1 cut(s) 298
SinI GGWCC 3 cut(s) 239, 382, 743
SmiMI CAYNNNNRTG 1 cut(s) 14
Sse9I AATT 3 cut(s) 432, 456, 520
SspMI CTAG 1 cut(s) 836
SstI GAGCTC 1 cut(s) 75
StyD4I CCNGG 5 cut(s) 54, 363, 378, 707, 827
TaaI ACNGT 1 cut(s) 548
TaiI ACGT 2 cut(s) 517, 665
TaqI TCGA 4 cut(s) 223, 372, 648, 671
TasI AATT 3 cut(s) 432, 456, 520
TatI WGTACW 2 cut(s) 582, 902
TauI GCSGC 6 cut(s) 99, 102, 161, 173, 176, 185
TfiI GAWTC 1 cut(s) 854
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TscAI CASTG 1 cut(s) 18
TseI GCWGC 8 cut(s) 61, 134, 155, 208, 252, 343, 566, 727
TspDTI ATGAA 3 cut(s) 632, 797, 903
TspGWI ACGGA 1 cut(s) 735
TspRI CASTG 1 cut(s) 18
Tth111I GACNNNGTC 1 cut(s) 736
VpaK11BI GGWCC 3 cut(s) 239, 382, 743
XagI CCTNNNNNAGG 1 cut(s) 362
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
XspI CTAG 1 cut(s) 836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.