RLG00000016120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016663
Physical Location & Seq
Forward (+)
4040071 .. 4040928
858 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016120

Sequence Viewer

Length: 858 bp
ATGAAGGGCACATCCAAAGTGATAATGGGGGCGACGCTGGTAATGGTGGTGAGCCTTGCCATAGTCTTGGGCTTAATCTTGGTTCTCCTAGCTGAGCTATACTGTTCACTTTTGCTCCGCCGCAGGCGTCAGCACAAAACCGACAGAAACAACTTCATCGTCAACACCGACCTGTCCGCCACCGCCGCCTCCGCCACCGAAGCAGCCACCACCACCACCTCAGCCGAGCCCTCCTTACAACCCCAAGGCCCTCCTCTAGGCAGCTTTTTAGGCGTTCTTCGAGCTCCGAGAAGCTTCCTCTTCCCATCATGCAAAGAAGAGTACAATGCAGAACCAAAGAAGCAACACCTCCACCACGTTCTCGACATCCCAAACCAAGACATATCAAACGAATCACCATCGATTTCCTTAGCAAATTCACCACAGCCAACGCAACGAGACCCAGTTCAAGCTGGTACTACTCCAAACACTGCCGCTGCTGCCGGAGAAGATCATTTGGTATATATTTCCAATCCGATTTACGACAACGAAGCAAACAGAGCTAGCAGCAGCACTACTACAGGAGCAAACACTCCCTTTGAAACTCCGGACACATCGCCTTCAAGACTAGAAATGGGGGGCTCTACTTCTAGCTCCGGTGAAGATAACGATGAGGTTGCACAACCAACTCCATCCGGTTCTGGACCTTCAAGCCCGACCACACCTCCTCTAACTCCAATGAAGAAGCTACCCAAAGAGGCATGCTCTGTTTCTCTCAGAGACGCAAGGTCTCTAGGCACTTCAGGTAGTGATTCCAACACTAACAATGGTAACTCATCCTCATCCTCAGGTTCTCCTTGTACTTCTCCTTCATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

286

Amino Acids

29.84

Weight (kDa)

5.55

Isoelectric Point (pI)

56.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016663)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29300 AT3G29300
fragaria_vesca FvH4_1g04931
malus_domestica MD02G1047900.v1.1
prunus_persica Prupe.7G230300_v2.0.a1
pyrus_communis pycom15g16710
rosa_chinensis RchiOBHm_Chr2g0090531
rosa_laevigata RLG00000016120
rosa_multiflora Rmu_sc0004514.1_g000027
rosa_roxburghii Rroxscaffold_2G00151060
rosa_rugosa Rorug02G0008900
rosa_samantha Rh2AG054100 Rh2DG054300
rosa_wichuraiana Rw2G004770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 586
AciI CCGC 7 cut(s) 118, 121, 177, 183, 186, 192, 474
AcsI RAATTY 1 cut(s) 415
AcuI CTGAAG 1 cut(s) 765
AcyI GRCGYC 1 cut(s) 127
AfaI GTAC 3 cut(s) 323, 457, 841
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 4 cut(s) 449, 581, 603, 690
AhdI GACNNNNNGTC 1 cut(s) 766
AluBI AGCT 9 cut(s) 92, 97, 264, 284, 294, 452, 542, 633, 727
AluI AGCT 9 cut(s) 92, 97, 264, 284, 294, 452, 542, 633, 727
Alw21I GWGCWC 1 cut(s) 286
Alw26I GTCTC 3 cut(s) 432, 753, 774
Aor13HI TCCGGA 1 cut(s) 586
AoxI GGCC 1 cut(s) 247
ApeKI GCWGC 6 cut(s) 203, 261, 476, 479, 546, 549
ApoI RAATTY 1 cut(s) 415
AspS9I GGNCC 2 cut(s) 248, 683
AsuHPI GGTGA 4 cut(s) 61, 387, 411, 650
AsuNHI GCTAGC 1 cut(s) 542
AvaII GGWCC 1 cut(s) 683
AxyI CCTNAGG 1 cut(s) 826
BaeGI GKGCMC 1 cut(s) 11
BanII GRGCYC 3 cut(s) 231, 286, 623
BarI GAAGNNNNNNTAC 1 cut(s) 832
Bbv12I GWGCWC 1 cut(s) 286
BbvCI CCTCAGC 1 cut(s) 220
BbvI GCAGC 6 cut(s) 215, 273, 463, 466, 558, 561
BccI CCATC 3 cut(s) 313, 406, 679
BcgI CGANNNNNNTGC 2 cut(s) 638, 672
BcoDI GTCTC 3 cut(s) 432, 753, 774
BfaI CTAG 6 cut(s) 89, 257, 543, 608, 630, 773
BfmI CTRYAG 1 cut(s) 558
BisI GCNGC 9 cut(s) 121, 186, 204, 262, 474, 477, 480, 547, 550
BlpI GCTNAGC 1 cut(s) 93
BlsI GCNGC 9 cut(s) 122, 187, 205, 263, 475, 478, 481, 548, 551
Bme18I GGWCC 1 cut(s) 683
BmeRI GACNNNNNGTC 1 cut(s) 766
BmgT120I GGNCC 2 cut(s) 248, 683
BmrI ACTGGG 1 cut(s) 437
BmtI GCTAGC 1 cut(s) 546
BmuI ACTGGG 1 cut(s) 437
BplI GAGNNNNNCTC 2 cut(s) 728, 760
Bpu10I CCTNAGC 2 cut(s) 220, 409
Bpu1102I GCTNAGC 1 cut(s) 93
Bsa29I ATCGAT 1 cut(s) 401
BsaHI GRCGYC 1 cut(s) 127
BsaI GGTCTC 2 cut(s) 432, 774
BsaJI CCNNGG 1 cut(s) 244
BsaWI WCCGGW 3 cut(s) 586, 635, 674
BsaXI ACNNNNNCTCC 4 cut(s) 99, 129, 688, 718
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse1I ACTGG 1 cut(s) 443
Bse21I CCTNAGG 1 cut(s) 826
BseAI TCCGGA 1 cut(s) 586
BseCI ATCGAT 1 cut(s) 401
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 5 cut(s) 11, 366, 671, 815, 821
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMII CTCAG 4 cut(s) 84, 234, 769, 840
BseNI ACTGG 1 cut(s) 443
BseRI GAGGAG 2 cut(s) 243, 696
BseSI GKGCMC 1 cut(s) 11
BseXI GCAGC 6 cut(s) 215, 273, 463, 466, 558, 561
BshFI GGCC 1 cut(s) 249
BshVI ATCGAT 1 cut(s) 401
BsiHKAI GWGCWC 1 cut(s) 286
BsiSI CCGG 4 cut(s) 483, 587, 636, 675
BslI CCNNNNNNNGG 1 cut(s) 257
BsmAI GTCTC 3 cut(s) 432, 753, 774
BsmBI CGTCTC 1 cut(s) 753
BsnI GGCC 1 cut(s) 249
Bso31I GGTCTC 2 cut(s) 432, 774
Bsp1286I GDGCHC 4 cut(s) 11, 231, 286, 623
Bsp13I TCCGGA 1 cut(s) 586
Bsp143I GATC 1 cut(s) 490
Bsp1720I GCTNAGC 1 cut(s) 93
BspACI CCGC 7 cut(s) 118, 121, 177, 183, 186, 192, 474
BspANI GGCC 1 cut(s) 249
BspCNI CTCAG 4 cut(s) 85, 233, 768, 839
BspDI ATCGAT 1 cut(s) 401
BspEI TCCGGA 1 cut(s) 586
BspOI GCTAGC 1 cut(s) 546
BspTNI GGTCTC 2 cut(s) 432, 774
BsrI ACTGG 1 cut(s) 443
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 1 cut(s) 490
BssNI GRCGYC 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 244
Bst4CI ACNGT 1 cut(s) 104
Bst6I CTCTTC 2 cut(s) 305, 312
BstACI GRCGYC 1 cut(s) 127
BstC8I GCNNGC 3 cut(s) 125, 544, 742
BstDEI CTNAG 5 cut(s) 93, 220, 409, 755, 826
BstENI CCTNNNNNAGG 1 cut(s) 255
BstF5I GGATG 5 cut(s) 11, 366, 671, 815, 821
BstKTI GATC 1 cut(s) 493
BstMAI GTCTC 3 cut(s) 432, 753, 774
BstMBI GATC 1 cut(s) 490
BstMWI GCNNNNNNNGC 6 cut(s) 185, 191, 200, 270, 479, 539
BstNSI RCATGY 1 cut(s) 744
BstSFI CTRYAG 1 cut(s) 558
BstSLI GKGCMC 1 cut(s) 11
BstV1I GCAGC 6 cut(s) 215, 273, 463, 466, 558, 561
BstXI CCANNNNNNTGG 1 cut(s) 67
Bsu15I ATCGAT 1 cut(s) 401
Bsu36I CCTNAGG 1 cut(s) 826
BsuRI GGCC 1 cut(s) 249
BsuTUI ATCGAT 1 cut(s) 401
BtgZI GCGATG 1 cut(s) 579
BtsCI GGATG 5 cut(s) 11, 366, 671, 815, 821
BtsI GCAGTG 1 cut(s) 468
BtsIMutI CAGTG 1 cut(s) 468
Cac8I GCNNGC 3 cut(s) 125, 544, 742
Cfr13I GGNCC 2 cut(s) 248, 683
ClaI ATCGAT 1 cut(s) 401
CseI GACGC 3 cut(s) 43, 116, 770
Csp6I GTAC 3 cut(s) 322, 456, 840
CviAII CATG 3 cut(s) 309, 741, 852
CviQI GTAC 3 cut(s) 322, 456, 840
DdeI CTNAG 5 cut(s) 93, 220, 409, 755, 826
DpnI GATC 1 cut(s) 492
DpnII GATC 1 cut(s) 490
DriI GACNNNNNGTC 1 cut(s) 766
Eam1104I CTCTTC 2 cut(s) 305, 312
Eam1105I GACNNNNNGTC 1 cut(s) 766
EarI CTCTTC 2 cut(s) 305, 312
EciI GGCGGA 3 cut(s) 107, 166, 181
Ecl136II GAGCTC 1 cut(s) 284
Eco130I CCWWGG 1 cut(s) 244
Eco24I GRGCYC 3 cut(s) 231, 286, 623
Eco31I GGTCTC 2 cut(s) 432, 774
Eco47I GGWCC 1 cut(s) 683
Eco53kI GAGCTC 1 cut(s) 284
Eco57I CTGAAG 1 cut(s) 765
Eco81I CCTNAGG 1 cut(s) 826
EcoICRI GAGCTC 1 cut(s) 284
EcoNI CCTNNNNNAGG 1 cut(s) 255
EcoO109I RGGNCCY 1 cut(s) 248
EcoT14I CCWWGG 1 cut(s) 244
EcoT38I GRGCYC 3 cut(s) 231, 286, 623
ErhI CCWWGG 1 cut(s) 244
Esp3I CGTCTC 1 cut(s) 753
FaeI CATG 3 cut(s) 312, 744, 855
FaiI YATR 8 cut(s) 62, 100, 310, 383, 502, 504, 742, 853
FatI CATG 3 cut(s) 308, 740, 851
Fnu4HI GCNGC 9 cut(s) 121, 186, 204, 262, 474, 477, 480, 547, 550
FokI GGATG 4 cut(s) 353, 658, 802, 808
FriOI GRGCYC 3 cut(s) 231, 286, 623
Fsp4HI GCNGC 9 cut(s) 121, 186, 204, 262, 474, 477, 480, 547, 550
FspBI CTAG 6 cut(s) 89, 257, 543, 608, 630, 773
GluI GCNGC 9 cut(s) 121, 186, 204, 262, 474, 477, 480, 547, 550
HaeIII GGCC 1 cut(s) 249
HapII CCGG 4 cut(s) 483, 587, 636, 675
HgaI GACGC 3 cut(s) 43, 116, 770
Hin1I GRCGYC 1 cut(s) 127
Hin1II CATG 3 cut(s) 312, 744, 855
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HindIII AAGCTT 1 cut(s) 292
HinfI GANTC 2 cut(s) 392, 791
HpaII CCGG 4 cut(s) 483, 587, 636, 675
HphI GGTGA 4 cut(s) 61, 387, 411, 650
Hpy166II GTNNAC 2 cut(s) 107, 163
Hpy188I TCNGA 3 cut(s) 288, 516, 758
Hpy188III TCNNGA 4 cut(s) 362, 587, 603, 681
Hpy8I GTNNAC 2 cut(s) 107, 163
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 3 cut(s) 609, 696, 858
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 3 cut(s) 312, 329, 659
HpyF10VI GCNNNNNNNGC 6 cut(s) 185, 191, 200, 270, 479, 539
HpyF3I CTNAG 5 cut(s) 93, 220, 409, 755, 826
HpySE526I ACGT 1 cut(s) 357
Hsp92I GRCGYC 1 cut(s) 127
Hsp92II CATG 3 cut(s) 312, 744, 855
Kpn2I TCCGGA 1 cut(s) 586
Kzo9I GATC 1 cut(s) 490
LmnI GCTCC 4 cut(s) 120, 289, 563, 638
Lsp1109I GCAGC 6 cut(s) 215, 273, 463, 466, 558, 561
MaeI CTAG 6 cut(s) 89, 257, 543, 608, 630, 773
MaeII ACGT 1 cut(s) 357
MaeIII GTNAC 1 cut(s) 809
MalI GATC 1 cut(s) 492
MboI GATC 1 cut(s) 490
MboII GAAGA 6 cut(s) 269, 292, 329, 500, 653, 733
MhlI GDGCHC 4 cut(s) 11, 231, 286, 623
MluCI AATT 1 cut(s) 415
MmeI TCCRAC 1 cut(s) 819
MroI TCCGGA 1 cut(s) 586
MseI TTAA 1 cut(s) 74
MspA1I CMGCKG 1 cut(s) 476
MspI CCGG 4 cut(s) 483, 587, 636, 675
MwoI GCNNNNNNNGC 6 cut(s) 185, 191, 200, 270, 479, 539
NdeII GATC 1 cut(s) 490
NheI GCTAGC 1 cut(s) 542
NlaIII CATG 3 cut(s) 312, 744, 855
NmeAIII GCCGAG 1 cut(s) 250
NspI RCATGY 1 cut(s) 744
PaeI GCATGC 1 cut(s) 744
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PfeI GAWTC 2 cut(s) 392, 791
PkrI GCNGC 9 cut(s) 122, 187, 205, 263, 475, 478, 481, 548, 551
Psp124BI GAGCTC 1 cut(s) 286
PspPI GGNCC 2 cut(s) 248, 683
RsaI GTAC 3 cut(s) 323, 457, 841
RsaNI GTAC 3 cut(s) 322, 456, 840
SacI GAGCTC 1 cut(s) 286
SaqAI TTAA 1 cut(s) 74
SatI GCNGC 9 cut(s) 121, 186, 204, 262, 474, 477, 480, 547, 550
Sau3AI GATC 1 cut(s) 490
Sau96I GGNCC 2 cut(s) 248, 683
SduI GDGCHC 4 cut(s) 11, 231, 286, 623
SfcI CTRYAG 1 cut(s) 558
SinI GGWCC 1 cut(s) 683
SphI GCATGC 1 cut(s) 744
Sse9I AATT 1 cut(s) 415
SsiI CCGC 7 cut(s) 118, 121, 177, 183, 186, 192, 474
SspMI CTAG 6 cut(s) 89, 257, 543, 608, 630, 773
SstI GAGCTC 1 cut(s) 286
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 1 cut(s) 104
TaiI ACGT 1 cut(s) 360
TaqI TCGA 3 cut(s) 280, 363, 401
TasI AATT 1 cut(s) 415
TatI WGTACW 2 cut(s) 321, 839
TauI GCSGC 3 cut(s) 123, 188, 476
TfiI GAWTC 2 cut(s) 392, 791
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TscAI CASTG 1 cut(s) 475
TseI GCWGC 6 cut(s) 203, 261, 476, 479, 546, 549
TspDTI ATGAA 4 cut(s) 17, 145, 734, 840
TspRI CASTG 1 cut(s) 475
VpaK11BI GGWCC 1 cut(s) 683
XagI CCTNNNNNAGG 1 cut(s) 255
XapI RAATTY 1 cut(s) 415
XceI RCATGY 1 cut(s) 744
XcmI CCANNNNNNNNNTGG 1 cut(s) 22
XspI CTAG 6 cut(s) 89, 257, 543, 608, 630, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.