FvH4_1g04931

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016663
Physical Location & Seq
Forward (+)
2633355 .. 2634212
858 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g04931.t1

Sequence Viewer

Length: 858 bp
ATGAAGGGCACATCCAAAGTGATAATGGGGGCAACACTGGTAATGGTGGTGAGCCTTGCTATAGTCTTGGGCTTAATCTTGGTTCTCCTAGCTGAGCTCTACTGTTCACTCTTGCTCCGCCGCCGGCGTCAACACAAAACCGACAGCACCAACTCCATTGTCAATACTGACCTGTCCACCACCGCCGCCACCGCTACTGAAGCCACCACCGCCTCTGCCGACCCCTCATCACAACCCCAAGGCCCTCCTCTAGGCAGCTTCTTAGGCGTTCTTCGAGCTCCGAGAAGCTTGCTCTTCCCATCTTGCAAAGAAGAGTACAACACAGAACCAAAGAAGCATCAACAGTGTCACTACCACCACCATGTCCTCGACATCCCAACCCAAGAAATGTCAAACGAAACGCCATCGATTGCCTTAGCAAATTCACCACAGCCAAACCAACAACAACAAGACCCAATTCAAGCTGGTACTATCCCCAACACTGCCTCAGAAGATCATTTGGTATACATTTCCAATCCGATTTACGACAACGAAGCAAACAGAGATAGCAGCAGCACTACAGGAGCAAACACTCCCTTTGAAACTCCGGACACTTCGCCTTCAAGACTAGAAATGGGGGGTTCTTCTTCTAGCTCCGGTGAAGATAACGATGAGGTAGCTCAACCTACCCCTTCAGGCTCTGGGCCTTCCAGCCCAACCACACCTCCTCTAACTCCGATGAAGAAGCTACCCAAAGAGGCCTGCTCTGTTTCTCTCAGAGATGCAAGGTCTCTAGGTACTTCAGGCAGTGATTCCAACACTAACAATGGTAACTCATCCTCATCCTCAGGTTCTCCTTGTACTTCTCCTTCATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

286

Amino Acids

30.08

Weight (kDa)

5.33

Isoelectric Point (pI)

63.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016663)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29300 AT3G29300
fragaria_vesca FvH4_1g04931
malus_domestica MD02G1047900.v1.1
prunus_persica Prupe.7G230300_v2.0.a1
pyrus_communis pycom15g16710
rosa_chinensis RchiOBHm_Chr2g0090531
rosa_laevigata RLG00000016120
rosa_multiflora Rmu_sc0004514.1_g000027
rosa_roxburghii Rroxscaffold_2G00151060
rosa_rugosa Rorug02G0008900
rosa_samantha Rh2AG054100 Rh2DG054300
rosa_wichuraiana Rw2G004770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 504
AccIII TCCGGA 1 cut(s) 586
AciI CCGC 6 cut(s) 118, 121, 183, 186, 192, 210
AcsI RAATTY 1 cut(s) 421
AcuI CTGAAG 3 cut(s) 219, 657, 765
AcyI GRCGYC 1 cut(s) 127
AfaI GTAC 4 cut(s) 317, 469, 778, 841
AfiI CCNNNNNNNGG 1 cut(s) 251
AgsI TTSAA 3 cut(s) 461, 581, 603
AluBI AGCT 9 cut(s) 92, 97, 258, 278, 288, 464, 633, 659, 727
AluI AGCT 9 cut(s) 92, 97, 258, 278, 288, 464, 633, 659, 727
Alw21I GWGCWC 2 cut(s) 99, 280
Alw26I GTCTC 1 cut(s) 774
AlwNI CAGNNNCTG 1 cut(s) 680
Aor13HI TCCGGA 1 cut(s) 586
AoxI GGCC 3 cut(s) 241, 683, 738
ApeKI GCWGC 3 cut(s) 255, 549, 552
ApoI RAATTY 1 cut(s) 421
AspS9I GGNCC 2 cut(s) 242, 683
AsuHPI GGTGA 3 cut(s) 61, 417, 650
AxyI CCTNAGG 1 cut(s) 826
BaeGI GKGCMC 1 cut(s) 11
BanII GRGCYC 2 cut(s) 99, 280
BarI GAAGNNNNNNTAC 1 cut(s) 832
Bbv12I GWGCWC 2 cut(s) 99, 280
BbvI GCAGC 3 cut(s) 267, 561, 564
BccI CCATC 2 cut(s) 307, 412
BcgI CGANNNNNNTGC 2 cut(s) 271, 305
BcoDI GTCTC 1 cut(s) 774
BfaI CTAG 5 cut(s) 89, 251, 608, 630, 773
BfmI CTRYAG 2 cut(s) 60, 558
BisI GCNGC 5 cut(s) 121, 186, 256, 550, 553
BlpI GCTNAGC 1 cut(s) 93
BlsI GCNGC 5 cut(s) 122, 187, 257, 551, 554
BmgT120I GGNCC 2 cut(s) 242, 683
BmsI GCATC 2 cut(s) 346, 751
BplI GAGNNNNNCTC 2 cut(s) 728, 760
Bpu10I CCTNAGC 1 cut(s) 415
Bpu1102I GCTNAGC 1 cut(s) 93
Bsa29I ATCGAT 1 cut(s) 407
BsaHI GRCGYC 1 cut(s) 127
BsaI GGTCTC 1 cut(s) 774
BsaJI CCNNGG 1 cut(s) 238
BsaWI WCCGGW 2 cut(s) 586, 635
BsaXI ACNNNNNCTCC 4 cut(s) 99, 129, 688, 718
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse118I RCCGGY 1 cut(s) 123
Bse1I ACTGG 1 cut(s) 42
Bse21I CCTNAGG 1 cut(s) 826
BseAI TCCGGA 1 cut(s) 586
BseCI ATCGAT 1 cut(s) 407
BseDI CCNNGG 1 cut(s) 238
BseGI GGATG 4 cut(s) 11, 372, 815, 821
BseLI CCNNNNNNNGG 1 cut(s) 251
BseMII CTCAG 4 cut(s) 84, 501, 769, 840
BseNI ACTGG 1 cut(s) 42
BseRI GAGGAG 2 cut(s) 237, 696
BseSI GKGCMC 1 cut(s) 11
BseXI GCAGC 3 cut(s) 267, 561, 564
BshFI GGCC 3 cut(s) 243, 685, 740
BshVI ATCGAT 1 cut(s) 407
BsiHKAI GWGCWC 2 cut(s) 99, 280
BsiSI CCGG 3 cut(s) 124, 587, 636
BslI CCNNNNNNNGG 1 cut(s) 251
BsmAI GTCTC 1 cut(s) 774
BsnI GGCC 3 cut(s) 243, 685, 740
Bso31I GGTCTC 1 cut(s) 774
Bsp1286I GDGCHC 3 cut(s) 11, 99, 280
Bsp13I TCCGGA 1 cut(s) 586
Bsp143I GATC 1 cut(s) 493
Bsp1720I GCTNAGC 1 cut(s) 93
BspACI CCGC 6 cut(s) 118, 121, 183, 186, 192, 210
BspANI GGCC 3 cut(s) 243, 685, 740
BspCNI CTCAG 4 cut(s) 85, 500, 768, 839
BspDI ATCGAT 1 cut(s) 407
BspEI TCCGGA 1 cut(s) 586
BspQI GCTCTTC 1 cut(s) 299
BspTNI GGTCTC 1 cut(s) 774
BsrFI RCCGGY 1 cut(s) 123
BsrI ACTGG 1 cut(s) 42
BssAI RCCGGY 1 cut(s) 123
BssECI CCNNGG 1 cut(s) 238
BssMI GATC 1 cut(s) 493
BssNAI GTATAC 1 cut(s) 505
BssNI GRCGYC 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 238
Bst1107I GTATAC 1 cut(s) 505
Bst4CI ACNGT 2 cut(s) 104, 345
Bst6I CTCTTC 2 cut(s) 299, 306
BstACI GRCGYC 1 cut(s) 127
BstC8I GCNNGC 3 cut(s) 125, 290, 742
BstDEI CTNAG 6 cut(s) 93, 262, 415, 487, 755, 826
BstENI CCTNNNNNAGG 1 cut(s) 249
BstF5I GGATG 4 cut(s) 11, 372, 815, 821
BstKTI GATC 1 cut(s) 496
BstMAI GTCTC 1 cut(s) 774
BstMBI GATC 1 cut(s) 493
BstMWI GCNNNNNNNGC 4 cut(s) 191, 200, 209, 264
BstSFI CTRYAG 2 cut(s) 60, 558
BstSLI GKGCMC 1 cut(s) 11
BstV1I GCAGC 3 cut(s) 267, 561, 564
BstZ17I GTATAC 1 cut(s) 505
Bsu15I ATCGAT 1 cut(s) 407
Bsu36I CCTNAGG 1 cut(s) 826
BsuRI GGCC 3 cut(s) 243, 685, 740
BsuTUI ATCGAT 1 cut(s) 407
BtsCI GGATG 4 cut(s) 11, 372, 815, 821
BtsI GCAGTG 2 cut(s) 480, 793
BtsIMutI CAGTG 4 cut(s) 35, 350, 480, 793
Cac8I GCNNGC 3 cut(s) 125, 290, 742
CaiI CAGNNNCTG 1 cut(s) 680
Cfr10I RCCGGY 1 cut(s) 123
Cfr13I GGNCC 2 cut(s) 242, 683
ClaI ATCGAT 1 cut(s) 407
CseI GACGC 1 cut(s) 116
Csp6I GTAC 4 cut(s) 316, 468, 777, 840
CviAII CATG 2 cut(s) 362, 852
CviQI GTAC 4 cut(s) 316, 468, 777, 840
DdeI CTNAG 6 cut(s) 93, 262, 415, 487, 755, 826
DpnI GATC 1 cut(s) 495
DpnII GATC 1 cut(s) 493
Eam1104I CTCTTC 2 cut(s) 299, 306
EarI CTCTTC 2 cut(s) 299, 306
EciI GGCGGA 1 cut(s) 107
Ecl136II GAGCTC 2 cut(s) 97, 278
Eco130I CCWWGG 1 cut(s) 238
Eco147I AGGCCT 1 cut(s) 740
Eco24I GRGCYC 2 cut(s) 99, 280
Eco31I GGTCTC 1 cut(s) 774
Eco53kI GAGCTC 2 cut(s) 97, 278
Eco57I CTGAAG 3 cut(s) 219, 657, 765
Eco81I CCTNAGG 1 cut(s) 826
EcoICRI GAGCTC 2 cut(s) 97, 278
EcoNI CCTNNNNNAGG 1 cut(s) 249
EcoO109I RGGNCCY 1 cut(s) 242
EcoT14I CCWWGG 1 cut(s) 238
EcoT38I GRGCYC 2 cut(s) 99, 280
ErhI CCWWGG 1 cut(s) 238
FaeI CATG 2 cut(s) 365, 855
FaiI YATR 4 cut(s) 62, 363, 505, 853
FatI CATG 2 cut(s) 361, 851
FblI GTMKAC 1 cut(s) 504
Fnu4HI GCNGC 5 cut(s) 121, 186, 256, 550, 553
FokI GGATG 3 cut(s) 359, 802, 808
FriOI GRGCYC 2 cut(s) 99, 280
Fsp4HI GCNGC 5 cut(s) 121, 186, 256, 550, 553
FspBI CTAG 5 cut(s) 89, 251, 608, 630, 773
GluI GCNGC 5 cut(s) 121, 186, 256, 550, 553
HaeIII GGCC 3 cut(s) 243, 685, 740
HapII CCGG 3 cut(s) 124, 587, 636
HgaI GACGC 1 cut(s) 116
Hin1I GRCGYC 1 cut(s) 127
Hin1II CATG 2 cut(s) 365, 855
HincII GTYRAC 1 cut(s) 131
HindII GTYRAC 1 cut(s) 131
HindIII AAGCTT 1 cut(s) 286
HinfI GANTC 1 cut(s) 791
HpaII CCGG 3 cut(s) 124, 587, 636
HphI GGTGA 3 cut(s) 61, 417, 650
Hpy166II GTNNAC 4 cut(s) 107, 131, 177, 505
Hpy188I TCNGA 5 cut(s) 282, 490, 519, 717, 758
Hpy188III TCNNGA 2 cut(s) 587, 603
Hpy8I GTNNAC 4 cut(s) 107, 131, 177, 505
HpyAV CCTTC 4 cut(s) 609, 681, 696, 858
HpyCH4III ACNGT 2 cut(s) 104, 345
HpyCH4V TGCA 2 cut(s) 306, 764
HpyF10VI GCNNNNNNNGC 4 cut(s) 191, 200, 209, 264
HpyF3I CTNAG 6 cut(s) 93, 262, 415, 487, 755, 826
Hsp92I GRCGYC 1 cut(s) 127
Hsp92II CATG 2 cut(s) 365, 855
Kpn2I TCCGGA 1 cut(s) 586
KroI GCCGGC 1 cut(s) 123
KroNI GCCGGC 1 cut(s) 125
Kzo9I GATC 1 cut(s) 493
LguI GCTCTTC 1 cut(s) 299
LmnI GCTCC 4 cut(s) 120, 283, 563, 638
Lsp1109I GCAGC 3 cut(s) 267, 561, 564
LweI GCATC 2 cut(s) 346, 751
MaeI CTAG 5 cut(s) 89, 251, 608, 630, 773
MaeIII GTNAC 2 cut(s) 347, 809
MalI GATC 1 cut(s) 495
MboI GATC 1 cut(s) 493
MboII GAAGA 8 cut(s) 263, 286, 323, 503, 615, 618, 653, 733
MhlI GDGCHC 3 cut(s) 11, 99, 280
MluCI AATT 2 cut(s) 421, 456
MmeI TCCRAC 1 cut(s) 819
MreI CGCCGGCG 1 cut(s) 123
MroI TCCGGA 1 cut(s) 586
MroNI GCCGGC 1 cut(s) 123
MseI TTAA 1 cut(s) 74
MslI CAYNNNNRTG 1 cut(s) 360
MspI CCGG 3 cut(s) 124, 587, 636
MwoI GCNNNNNNNGC 4 cut(s) 191, 200, 209, 264
NaeI GCCGGC 1 cut(s) 125
NdeII GATC 1 cut(s) 493
NgoMIV GCCGGC 1 cut(s) 123
NlaIII CATG 2 cut(s) 365, 855
NmuCI GTSAC 1 cut(s) 347
PceI AGGCCT 1 cut(s) 740
PciSI GCTCTTC 1 cut(s) 299
PdiI GCCGGC 1 cut(s) 125
PfeI GAWTC 1 cut(s) 791
PkrI GCNGC 5 cut(s) 122, 187, 257, 551, 554
Psp124BI GAGCTC 2 cut(s) 99, 280
PspPI GGNCC 2 cut(s) 242, 683
PstNI CAGNNNCTG 1 cut(s) 680
RsaI GTAC 4 cut(s) 317, 469, 778, 841
RsaNI GTAC 4 cut(s) 316, 468, 777, 840
RseI CAYNNNNRTG 1 cut(s) 360
SacI GAGCTC 2 cut(s) 99, 280
SapI GCTCTTC 1 cut(s) 299
SaqAI TTAA 1 cut(s) 74
SatI GCNGC 5 cut(s) 121, 186, 256, 550, 553
Sau3AI GATC 1 cut(s) 493
Sau96I GGNCC 2 cut(s) 242, 683
SduI GDGCHC 3 cut(s) 11, 99, 280
SfaNI GCATC 2 cut(s) 346, 751
SfcI CTRYAG 2 cut(s) 60, 558
SgrAI CRCCGGYG 1 cut(s) 123
SmiMI CAYNNNNRTG 1 cut(s) 360
Sse9I AATT 2 cut(s) 421, 456
SseBI AGGCCT 1 cut(s) 740
SsiI CCGC 6 cut(s) 118, 121, 183, 186, 192, 210
SspMI CTAG 5 cut(s) 89, 251, 608, 630, 773
SstI GAGCTC 2 cut(s) 99, 280
StuI AGGCCT 1 cut(s) 740
StyI CCWWGG 1 cut(s) 238
TaaI ACNGT 2 cut(s) 104, 345
TaqI TCGA 3 cut(s) 274, 369, 407
TasI AATT 2 cut(s) 421, 456
TatI WGTACW 2 cut(s) 315, 839
TauI GCSGC 2 cut(s) 123, 188
TfiI GAWTC 1 cut(s) 791
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TscAI CASTG 4 cut(s) 42, 350, 487, 793
TseFI GTSAC 1 cut(s) 347
TseI GCWGC 3 cut(s) 255, 549, 552
Tsp45I GTSAC 1 cut(s) 347
TspDTI ATGAA 3 cut(s) 17, 734, 840
TspRI CASTG 4 cut(s) 42, 350, 487, 793
XagI CCTNNNNNAGG 1 cut(s) 249
XapI RAATTY 1 cut(s) 421
XcmI CCANNNNNNNNNTGG 1 cut(s) 22
XmiI GTMKAC 1 cut(s) 504
XspI CTAG 5 cut(s) 89, 251, 608, 630, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.