RchiOBHm_Chr2g0090531

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0016663
Physical Location & Seq
Forward (+)
4354285 .. 4355503
1219 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46577

Sequence Viewer

Length: 873 bp
ATGAAGGGCACATCCAAAGTGATAATGGGGGCAACGCTGGTAATGGTGGTGAGCCTTGCCATAGTCTTGGGCTTAATCTTGGTTCTCCTAGCTGAGCTATACTGTTCACTCTTGCTCCGCCGCAGGCGTCAGCACAAAACCGACAGAAACAACTCCATCGTCAACACCGACCTGTCCACCACCGCCGCCTCAGCCACCGAAGCAGCCACCACCACCACCGAAGCAGCTGCCGAGCCCTCATTACAACCCCAAGGCCCTCCTCTAGGCAGCTTTTTAGGCGTTCTTCGAGCTCCGAGAAGCTTCCTCTTCCCATCATGCAAAGAAGAGTACAATGCAGAACCAAAGAAGCAACAACACTGTCACCTCCACCACGTTCTCGACATCCCAAACCAAGAAATATCAAACGAATCACCATCTATTTCCTTAGCAAATTCACCACAGCCAGCGCAACGAGACCCAGTTCAAGCTGGTACTACTCCAAACACTGCCGCTGCTGCCGGAGAAGATCATTTGGTATACATTTCCAATCCGATATACGACAACGAAGCAAACAGAGCTAGCAGCAGCACTACTACAGGAGCAAACACTCCCTTTGAAACTCCGGACACATCGCCTTCAAGACTTGAAATGGGGGGCTCTACTTCTAGCTCCGGTGAAGATAACGATGAGCTTGCACAACCAACTCCATCCGGTTCTGGACCTTCAAGCCCAACCACACCTCCTCTAACTCCAATGAAGAAGCTACCCAAAGAGGCATGCTCTGTTTCTCTCAGAGACGCAAGGTCTCTAGGAACTTCAGGTAGTGATTCCAACACTAACAATGGTAACTCATCCTCATCCTCAGGTTCTCCTTGTACTTCTCCTTCATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

290

Amino Acids

30.36

Weight (kDa)

5.53

Isoelectric Point (pI)

60.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016663)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29300 AT3G29300
fragaria_vesca FvH4_1g04931
malus_domestica MD02G1047900.v1.1
prunus_persica Prupe.7G230300_v2.0.a1
pyrus_communis pycom15g16710
rosa_chinensis RchiOBHm_Chr2g0090531
rosa_laevigata RLG00000016120
rosa_multiflora Rmu_sc0004514.1_g000027
rosa_roxburghii Rroxscaffold_2G00151060
rosa_rugosa Rorug02G0008900
rosa_samantha Rh2AG054100 Rh2DG054300
rosa_wichuraiana Rw2G004770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 516
AccIII TCCGGA 1 cut(s) 601
AciI CCGC 5 cut(s) 118, 121, 183, 186, 489
AcsI RAATTY 1 cut(s) 430
AcuI CTGAAG 1 cut(s) 780
AcyI GRCGYC 1 cut(s) 127
AfaI GTAC 3 cut(s) 329, 472, 856
AfiI CCNNNNNNNGG 1 cut(s) 263
AgsI TTSAA 5 cut(s) 464, 596, 618, 626, 705
AhdI GACNNNNNGTC 1 cut(s) 781
Alw21I GWGCWC 1 cut(s) 292
Alw26I GTCTC 3 cut(s) 447, 768, 789
Aor13HI TCCGGA 1 cut(s) 601
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 8 cut(s) 203, 224, 227, 267, 491, 494, 561, 564
ApoI RAATTY 1 cut(s) 430
AspLEI GCGC 1 cut(s) 448
AspS9I GGNCC 2 cut(s) 254, 698
AsuHPI GGTGA 5 cut(s) 61, 353, 402, 426, 665
AsuNHI GCTAGC 1 cut(s) 557
AvaII GGWCC 1 cut(s) 698
AxyI CCTNAGG 1 cut(s) 841
BaeGI GKGCMC 1 cut(s) 11
BanII GRGCYC 3 cut(s) 237, 292, 638
BarI GAAGNNNNNNTAC 1 cut(s) 847
Bbv12I GWGCWC 1 cut(s) 292
BbvCI CCTCAGC 1 cut(s) 190
BbvI GCAGC 8 cut(s) 214, 215, 236, 279, 478, 481, 573, 576
BccI CCATC 4 cut(s) 164, 319, 421, 694
BcgI CGANNNNNNTGC 4 cut(s) 209, 243, 653, 687
BcoDI GTCTC 3 cut(s) 447, 768, 789
BfaI CTAG 5 cut(s) 89, 263, 558, 645, 788
BfmI CTRYAG 1 cut(s) 573
BlpI GCTNAGC 1 cut(s) 93
Bme18I GGWCC 1 cut(s) 698
BmeRI GACNNNNNGTC 1 cut(s) 781
BmgT120I GGNCC 2 cut(s) 254, 698
BmrI ACTGGG 1 cut(s) 452
BmtI GCTAGC 1 cut(s) 561
BmuI ACTGGG 1 cut(s) 452
BplI GAGNNNNNCTC 2 cut(s) 743, 775
Bpu10I CCTNAGC 2 cut(s) 190, 424
Bpu1102I GCTNAGC 1 cut(s) 93
BsaHI GRCGYC 1 cut(s) 127
BsaI GGTCTC 2 cut(s) 447, 789
BsaJI CCNNGG 1 cut(s) 250
BsaWI WCCGGW 3 cut(s) 601, 650, 689
BsaXI ACNNNNNCTCC 4 cut(s) 99, 129, 703, 733
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse1I ACTGG 1 cut(s) 458
Bse21I CCTNAGG 1 cut(s) 841
BseAI TCCGGA 1 cut(s) 601
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 5 cut(s) 11, 381, 686, 830, 836
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMII CTCAG 4 cut(s) 84, 204, 784, 855
BseNI ACTGG 1 cut(s) 458
BseRI GAGGAG 2 cut(s) 249, 711
BseSI GKGCMC 1 cut(s) 11
BseXI GCAGC 8 cut(s) 214, 215, 236, 279, 478, 481, 573, 576
BshFI GGCC 1 cut(s) 255
BsiHKAI GWGCWC 1 cut(s) 292
BsiSI CCGG 4 cut(s) 498, 602, 651, 690
BslI CCNNNNNNNGG 1 cut(s) 263
BsmAI GTCTC 3 cut(s) 447, 768, 789
BsmBI CGTCTC 1 cut(s) 768
BsnI GGCC 1 cut(s) 255
Bso31I GGTCTC 2 cut(s) 447, 789
Bsp1286I GDGCHC 4 cut(s) 11, 237, 292, 638
Bsp13I TCCGGA 1 cut(s) 601
Bsp143I GATC 1 cut(s) 505
Bsp1720I GCTNAGC 1 cut(s) 93
BspACI CCGC 5 cut(s) 118, 121, 183, 186, 489
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 4 cut(s) 85, 203, 783, 854
BspEI TCCGGA 1 cut(s) 601
BspOI GCTAGC 1 cut(s) 561
BspTNI GGTCTC 2 cut(s) 447, 789
BsrI ACTGG 1 cut(s) 458
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 1 cut(s) 505
BssNAI GTATAC 1 cut(s) 517
BssNI GRCGYC 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 250
Bst1107I GTATAC 1 cut(s) 517
Bst4CI ACNGT 2 cut(s) 104, 359
Bst6I CTCTTC 2 cut(s) 311, 318
BstACI GRCGYC 1 cut(s) 127
BstC8I GCNNGC 5 cut(s) 125, 444, 559, 672, 757
BstDEI CTNAG 5 cut(s) 93, 190, 424, 770, 841
BstENI CCTNNNNNAGG 1 cut(s) 261
BstF5I GGATG 5 cut(s) 11, 381, 686, 830, 836
BstHHI GCGC 1 cut(s) 448
BstKTI GATC 1 cut(s) 508
BstMAI GTCTC 3 cut(s) 447, 768, 789
BstMBI GATC 1 cut(s) 505
BstMWI GCNNNNNNNGC 5 cut(s) 191, 200, 276, 494, 554
BstNSI RCATGY 1 cut(s) 759
BstSFI CTRYAG 1 cut(s) 573
BstSLI GKGCMC 1 cut(s) 11
BstV1I GCAGC 8 cut(s) 214, 215, 236, 279, 478, 481, 573, 576
BstXI CCANNNNNNTGG 1 cut(s) 67
BstZ17I GTATAC 1 cut(s) 517
Bsu36I CCTNAGG 1 cut(s) 841
BsuRI GGCC 1 cut(s) 255
BtgZI GCGATG 1 cut(s) 594
BtsCI GGATG 5 cut(s) 11, 381, 686, 830, 836
BtsI GCAGTG 1 cut(s) 483
BtsIMutI CAGTG 2 cut(s) 355, 483
Cac8I GCNNGC 5 cut(s) 125, 444, 559, 672, 757
CfoI GCGC 1 cut(s) 448
Cfr13I GGNCC 2 cut(s) 254, 698
CseI GACGC 2 cut(s) 116, 785
Csp6I GTAC 3 cut(s) 328, 471, 855
CviAII CATG 3 cut(s) 315, 756, 867
CviQI GTAC 3 cut(s) 328, 471, 855
DdeI CTNAG 5 cut(s) 93, 190, 424, 770, 841
DpnI GATC 1 cut(s) 507
DpnII GATC 1 cut(s) 505
DriI GACNNNNNGTC 1 cut(s) 781
Eam1104I CTCTTC 2 cut(s) 311, 318
Eam1105I GACNNNNNGTC 1 cut(s) 781
EarI CTCTTC 2 cut(s) 311, 318
EciI GGCGGA 1 cut(s) 107
Ecl136II GAGCTC 1 cut(s) 290
Eco130I CCWWGG 1 cut(s) 250
Eco24I GRGCYC 3 cut(s) 237, 292, 638
Eco31I GGTCTC 2 cut(s) 447, 789
Eco47I GGWCC 1 cut(s) 698
Eco53kI GAGCTC 1 cut(s) 290
Eco57I CTGAAG 1 cut(s) 780
Eco81I CCTNAGG 1 cut(s) 841
EcoICRI GAGCTC 1 cut(s) 290
EcoNI CCTNNNNNAGG 1 cut(s) 261
EcoO109I RGGNCCY 1 cut(s) 254
EcoT14I CCWWGG 1 cut(s) 250
EcoT38I GRGCYC 3 cut(s) 237, 292, 638
ErhI CCWWGG 1 cut(s) 250
Esp3I CGTCTC 1 cut(s) 768
FaeI CATG 3 cut(s) 318, 759, 870
FaiI YATR 7 cut(s) 62, 100, 316, 517, 535, 757, 868
FatI CATG 3 cut(s) 314, 755, 866
FblI GTMKAC 1 cut(s) 516
FokI GGATG 4 cut(s) 368, 673, 817, 823
FriOI GRGCYC 3 cut(s) 237, 292, 638
FspBI CTAG 5 cut(s) 89, 263, 558, 645, 788
GlaI GCGC 1 cut(s) 447
HaeIII GGCC 1 cut(s) 255
HapII CCGG 4 cut(s) 498, 602, 651, 690
HgaI GACGC 2 cut(s) 116, 785
HhaI GCGC 1 cut(s) 448
Hin1I GRCGYC 1 cut(s) 127
Hin1II CATG 3 cut(s) 318, 759, 870
Hin6I GCGC 1 cut(s) 446
HinP1I GCGC 1 cut(s) 446
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HindIII AAGCTT 1 cut(s) 298
HinfI GANTC 2 cut(s) 407, 806
HpaII CCGG 4 cut(s) 498, 602, 651, 690
HphI GGTGA 5 cut(s) 61, 353, 402, 426, 665
Hpy166II GTNNAC 4 cut(s) 107, 163, 177, 517
Hpy188I TCNGA 3 cut(s) 294, 531, 773
Hpy188III TCNNGA 4 cut(s) 377, 602, 618, 696
Hpy8I GTNNAC 4 cut(s) 107, 163, 177, 517
HpyAV CCTTC 3 cut(s) 624, 711, 873
HpyCH4III ACNGT 2 cut(s) 104, 359
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 3 cut(s) 318, 335, 674
HpyF10VI GCNNNNNNNGC 5 cut(s) 191, 200, 276, 494, 554
HpyF3I CTNAG 5 cut(s) 93, 190, 424, 770, 841
HpySE526I ACGT 1 cut(s) 372
Hsp92I GRCGYC 1 cut(s) 127
Hsp92II CATG 3 cut(s) 318, 759, 870
HspAI GCGC 1 cut(s) 446
Kpn2I TCCGGA 1 cut(s) 601
Kzo9I GATC 1 cut(s) 505
LmnI GCTCC 4 cut(s) 120, 295, 578, 653
Lsp1109I GCAGC 8 cut(s) 214, 215, 236, 279, 478, 481, 573, 576
MaeI CTAG 5 cut(s) 89, 263, 558, 645, 788
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 2 cut(s) 359, 824
MalI GATC 1 cut(s) 507
MboI GATC 1 cut(s) 505
MboII GAAGA 6 cut(s) 275, 298, 335, 515, 668, 748
MhlI GDGCHC 4 cut(s) 11, 237, 292, 638
MluCI AATT 1 cut(s) 430
MmeI TCCRAC 1 cut(s) 834
MroI TCCGGA 1 cut(s) 601
MseI TTAA 1 cut(s) 74
MspA1I CMGCKG 2 cut(s) 227, 491
MspI CCGG 4 cut(s) 498, 602, 651, 690
MwoI GCNNNNNNNGC 5 cut(s) 191, 200, 276, 494, 554
NdeII GATC 1 cut(s) 505
NheI GCTAGC 1 cut(s) 557
NlaIII CATG 3 cut(s) 318, 759, 870
NmeAIII GCCGAG 1 cut(s) 256
NmuCI GTSAC 1 cut(s) 359
NspI RCATGY 1 cut(s) 759
PaeI GCATGC 1 cut(s) 759
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PfeI GAWTC 2 cut(s) 407, 806
Psp124BI GAGCTC 1 cut(s) 292
PspPI GGNCC 2 cut(s) 254, 698
PvuII CAGCTG 1 cut(s) 227
RsaI GTAC 3 cut(s) 329, 472, 856
RsaNI GTAC 3 cut(s) 328, 471, 855
SacI GAGCTC 1 cut(s) 292
SaqAI TTAA 1 cut(s) 74
Sau3AI GATC 1 cut(s) 505
Sau96I GGNCC 2 cut(s) 254, 698
SduI GDGCHC 4 cut(s) 11, 237, 292, 638
SfcI CTRYAG 1 cut(s) 573
SinI GGWCC 1 cut(s) 698
SphI GCATGC 1 cut(s) 759
Sse9I AATT 1 cut(s) 430
SsiI CCGC 5 cut(s) 118, 121, 183, 186, 489
SspMI CTAG 5 cut(s) 89, 263, 558, 645, 788
SstI GAGCTC 1 cut(s) 292
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 2 cut(s) 104, 359
TaiI ACGT 1 cut(s) 375
TaqI TCGA 2 cut(s) 286, 378
TasI AATT 1 cut(s) 430
TatI WGTACW 2 cut(s) 327, 854
TauI GCSGC 3 cut(s) 123, 188, 491
TfiI GAWTC 2 cut(s) 407, 806
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TscAI CASTG 2 cut(s) 362, 490
TseFI GTSAC 1 cut(s) 359
TseI GCWGC 8 cut(s) 203, 224, 227, 267, 491, 494, 561, 564
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 3 cut(s) 17, 749, 855
TspRI CASTG 2 cut(s) 362, 490
VpaK11BI GGWCC 1 cut(s) 698
XagI CCTNNNNNAGG 1 cut(s) 261
XapI RAATTY 1 cut(s) 430
XceI RCATGY 1 cut(s) 759
XcmI CCANNNNNNNNNTGG 1 cut(s) 22
XmiI GTMKAC 1 cut(s) 516
XspI CTAG 5 cut(s) 89, 263, 558, 645, 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.