Prupe.7G230300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0016663
Physical Location & Seq
Reverse (-)
20225193 .. 20226933
1741 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G230300.1

Sequence Viewer

Length: 924 bp
ATGAAGGGCACATCCAAGGTGATAATGGGGGCCACACTGGTAATGGTGGTGAGCCTTGCCATAGTGTTGGGCTTAATCTTGGTGCTGCTAGCTGAGCTCTACTGTTCCCTCCTACTTCGCCGGCGTCAGCTCAAAACCAACACCTCCAACCCAAACCTCACCGCTGATGCTGCCGACTCTGCAGCCACCACAACCTCTTCTCAGCAGCCCTCATCACAGCCTCAAGATCACTCAGCTGGCCCTCCTCTCAGCAGCTTTCTAGGGGTTCTTCGTGCTCCAAGAAGCTTCCTTTTCCCATCAGTTCCTTGCAAACAAGACAACGCAGAAACAAAGAAGCACCATACTCACCTTCTTCACCAGGTTTTTGACATCCCGGTCCCAAACCAAGAAATATTACCAAACACAACCCCCTGTCATATTGGGGTCATGATATCAAGCCCATCCCCATCAATTTCTTTTGTGACTTCACCGCAGCCAACCCAAGAAGACAAAATTCAAGCTGGTAATAGCAGTCCTGGTGCTCAGTGTAATGCGAAAGCTGCTGGTGGTGGTGGTGGTGCAGAGCATTTTGTGTACATTTCTAACCCCATTTATGACAATGATGAAGCAAGCACCAGGCACAGTGGAGGAGAAAACAACACTCCCTTTGAAACTCCAGAGACTTCACCTTCAAGACTAGAAATGGGAGGGGGTTCTTCTTCTTCTTGCTCTGGAGAGGATGAGGTTGCCCAACCAACCCCTTCTGGTCCCTCAAGCCCAACAACCACACCTCCTCTAACTCCAATGAAGAAGCTCCCTGCAGAGGCTTGCTCTGTTCCTCTCAGAGATGCCAGGTCATTAGGCACTTCAGGTAGTGATTCCAATACTAACAATGGCCTCTCTTCTTCTTCATCAGGTTCTCCTTGTACTTCTCCTTCATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

308

Amino Acids

31.86

Weight (kDa)

5.88

Isoelectric Point (pI)

65.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016663)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29300 AT3G29300
fragaria_vesca FvH4_1g04931
malus_domestica MD02G1047900.v1.1
prunus_persica Prupe.7G230300_v2.0.a1
pyrus_communis pycom15g16710
rosa_chinensis RchiOBHm_Chr2g0090531
rosa_laevigata RLG00000016120
rosa_multiflora Rmu_sc0004514.1_g000027
rosa_roxburghii Rroxscaffold_2G00151060
rosa_rugosa Rorug02G0008900
rosa_samantha Rh2AG054100 Rh2DG054300
rosa_wichuraiana Rw2G004770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 374
AciI CCGC 2 cut(s) 162, 470
AcsI RAATTY 1 cut(s) 492
AcuI CTGAAG 1 cut(s) 831
AcyI GRCGYC 1 cut(s) 124
AfaI GTAC 2 cut(s) 575, 907
AfiI CCNNNNNNNGG 1 cut(s) 802
AgsI TTSAA 3 cut(s) 497, 650, 672
AjnI CCWGG 4 cut(s) 357, 514, 614, 830
AluBI AGCT 9 cut(s) 92, 97, 130, 236, 255, 285, 500, 539, 793
AluI AGCT 9 cut(s) 92, 97, 130, 236, 255, 285, 500, 539, 793
Alw21I GWGCWC 3 cut(s) 99, 277, 523
Alw26I GTCTC 1 cut(s) 653
AoxI GGCC 3 cut(s) 30, 238, 874
ApeKI GCWGC 7 cut(s) 85, 170, 182, 205, 252, 472, 539
ApoI RAATTY 1 cut(s) 492
AspS9I GGNCC 4 cut(s) 30, 239, 376, 746
AsuC2I CCSGG 1 cut(s) 374
AsuHPI GGTGA 7 cut(s) 31, 61, 151, 338, 347, 459, 657
AsuNHI GCTAGC 1 cut(s) 88
AvaII GGWCC 2 cut(s) 376, 746
BaeGI GKGCMC 1 cut(s) 11
BanII GRGCYC 1 cut(s) 99
BarI GAAGNNNNNNTAC 1 cut(s) 898
BbsI GAAGAC 1 cut(s) 492
Bbv12I GWGCWC 3 cut(s) 99, 277, 523
BbvI GCAGC 7 cut(s) 72, 157, 194, 217, 264, 484, 526
BccI CCATC 3 cut(s) 304, 448, 454
BciT130I CCWGG 4 cut(s) 359, 516, 616, 832
BcnI CCSGG 1 cut(s) 374
BcoDI GTCTC 1 cut(s) 653
BfaI CTAG 3 cut(s) 89, 260, 677
BfmI CTRYAG 2 cut(s) 180, 798
BisI GCNGC 7 cut(s) 86, 171, 183, 206, 253, 473, 540
BlpI GCTNAGC 1 cut(s) 93
BlsI GCNGC 7 cut(s) 87, 172, 184, 207, 254, 474, 541
Bme1390I CCNGG 5 cut(s) 359, 374, 516, 616, 832
Bme18I GGWCC 2 cut(s) 376, 746
BmgT120I GGNCC 4 cut(s) 30, 239, 376, 746
BmiI GGNNCC 3 cut(s) 31, 378, 748
BmrFI CCNGG 5 cut(s) 359, 374, 516, 616, 832
BmsI GCATC 2 cut(s) 157, 817
BmtI GCTAGC 1 cut(s) 92
BpiI GAAGAC 1 cut(s) 492
BplI GAGNNNNNCTC 2 cut(s) 794, 826
BpmI CTGGAG 2 cut(s) 639, 732
Bpu1102I GCTNAGC 1 cut(s) 93
BpuEI CTTGAG 2 cut(s) 207, 736
BpuMI CCSGG 1 cut(s) 374
BsaHI GRCGYC 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 15
BsaXI ACNNNNNCTCC 2 cut(s) 754, 784
Bsc4I CCNNNNNNNGG 1 cut(s) 802
Bse118I RCCGGY 1 cut(s) 120
Bse1I ACTGG 1 cut(s) 42
BseBI CCWGG 4 cut(s) 359, 516, 616, 832
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 4 cut(s) 11, 369, 440, 724
BseLI CCNNNNNNNGG 1 cut(s) 802
BseMII CTCAG 6 cut(s) 84, 215, 246, 262, 536, 835
BseNI ACTGG 1 cut(s) 42
BseRI GAGGAG 3 cut(s) 234, 642, 762
BseSI GKGCMC 1 cut(s) 11
BseXI GCAGC 7 cut(s) 72, 157, 194, 217, 264, 484, 526
BsgI GTGCAG 1 cut(s) 579
BshFI GGCC 3 cut(s) 32, 240, 876
BsiHKAI GWGCWC 3 cut(s) 99, 277, 523
BsiSI CCGG 2 cut(s) 121, 374
BslFI GGGAC 2 cut(s) 362, 732
BslI CCNNNNNNNGG 1 cut(s) 802
BsmAI GTCTC 1 cut(s) 653
BsmFI GGGAC 2 cut(s) 362, 732
BsnI GGCC 3 cut(s) 32, 240, 876
Bsp1286I GDGCHC 4 cut(s) 11, 99, 277, 523
Bsp1407I TGTACA 1 cut(s) 573
Bsp143I GATC 1 cut(s) 226
Bsp1720I GCTNAGC 1 cut(s) 93
BspACI CCGC 2 cut(s) 162, 470
BspANI GGCC 3 cut(s) 32, 240, 876
BspCNI CTCAG 6 cut(s) 85, 214, 245, 261, 535, 834
BspHI TCATGA 1 cut(s) 426
BspLI GGNNCC 3 cut(s) 31, 378, 748
BspMAI CTGCAG 2 cut(s) 184, 802
BspOI GCTAGC 1 cut(s) 92
BsrFI RCCGGY 1 cut(s) 120
BsrGI TGTACA 1 cut(s) 573
BsrI ACTGG 1 cut(s) 42
BssAI RCCGGY 1 cut(s) 120
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 1 cut(s) 226
BssNI GRCGYC 1 cut(s) 124
BssT1I CCWWGG 1 cut(s) 15
Bst2UI CCWGG 4 cut(s) 359, 516, 616, 832
Bst4CI ACNGT 2 cut(s) 104, 623
Bst6I CTCTTC 2 cut(s) 202, 886
BstACI GRCGYC 1 cut(s) 124
BstAUI TGTACA 1 cut(s) 573
BstC8I GCNNGC 5 cut(s) 90, 122, 238, 610, 808
BstDEI CTNAG 6 cut(s) 93, 201, 232, 248, 522, 821
BstF5I GGATG 4 cut(s) 11, 369, 440, 724
BstKTI GATC 1 cut(s) 229
BstMAI GTCTC 1 cut(s) 653
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 4 cut(s) 94, 170, 179, 539
BstNI CCWGG 4 cut(s) 359, 516, 616, 832
BstSCI CCNGG 5 cut(s) 357, 372, 514, 614, 830
BstSFI CTRYAG 2 cut(s) 180, 798
BstSLI GKGCMC 1 cut(s) 11
BstV1I GCAGC 7 cut(s) 72, 157, 194, 217, 264, 484, 526
BstV2I GAAGAC 1 cut(s) 492
BstXI CCANNNNNNTGG 1 cut(s) 67
BsuRI GGCC 3 cut(s) 32, 240, 876
BtsCI GGATG 4 cut(s) 11, 369, 440, 724
BtsIMutI CAGTG 3 cut(s) 35, 530, 628
Cac8I GCNNGC 5 cut(s) 90, 122, 238, 610, 808
CciI TCATGA 1 cut(s) 426
Cfr10I RCCGGY 1 cut(s) 120
Cfr13I GGNCC 4 cut(s) 30, 239, 376, 746
CseI GACGC 1 cut(s) 113
CsiI ACCWGGT 1 cut(s) 357
Csp6I GTAC 2 cut(s) 574, 906
CviAII CATG 2 cut(s) 427, 918
CviQI GTAC 2 cut(s) 574, 906
DdeI CTNAG 6 cut(s) 93, 201, 232, 248, 522, 821
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
DrdI GACNNNNNNGTC 1 cut(s) 374
DseDI GACNNNNNNGTC 1 cut(s) 374
Eam1104I CTCTTC 2 cut(s) 202, 886
EarI CTCTTC 2 cut(s) 202, 886
Ecl136II GAGCTC 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 15
Eco24I GRGCYC 1 cut(s) 99
Eco32I GATATC 1 cut(s) 432
Eco47I GGWCC 2 cut(s) 376, 746
Eco53kI GAGCTC 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 831
EcoICRI GAGCTC 1 cut(s) 97
EcoRII CCWGG 4 cut(s) 357, 514, 614, 830
EcoRV GATATC 1 cut(s) 432
EcoT14I CCWWGG 1 cut(s) 15
EcoT38I GRGCYC 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 15
FaeI CATG 2 cut(s) 430, 921
FaiI YATR 6 cut(s) 62, 342, 417, 428, 594, 919
FaqI GGGAC 2 cut(s) 362, 732
FatI CATG 2 cut(s) 426, 917
Fnu4HI GCNGC 7 cut(s) 86, 171, 183, 206, 253, 473, 540
FokI GGATG 3 cut(s) 356, 427, 731
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 7 cut(s) 86, 171, 183, 206, 253, 473, 540
FspBI CTAG 3 cut(s) 89, 260, 677
GluI GCNGC 7 cut(s) 86, 171, 183, 206, 253, 473, 540
GsuI CTGGAG 2 cut(s) 639, 732
HaeIII GGCC 3 cut(s) 32, 240, 876
HapII CCGG 2 cut(s) 121, 374
HgaI GACGC 1 cut(s) 113
Hin1I GRCGYC 1 cut(s) 124
Hin1II CATG 2 cut(s) 430, 921
HindIII AAGCTT 1 cut(s) 283
HinfI GANTC 2 cut(s) 176, 857
HpaII CCGG 2 cut(s) 121, 374
HphI GGTGA 7 cut(s) 31, 61, 151, 338, 347, 459, 657
Hpy166II GTNNAC 1 cut(s) 574
Hpy188I TCNGA 1 cut(s) 824
Hpy188III TCNNGA 5 cut(s) 224, 427, 656, 672, 711
Hpy8I GTNNAC 1 cut(s) 574
HpyAV CCTTC 4 cut(s) 359, 678, 750, 924
HpyCH4III ACNGT 2 cut(s) 104, 623
HpyCH4V TGCA 4 cut(s) 182, 309, 560, 800
HpyF10VI GCNNNNNNNGC 4 cut(s) 94, 170, 179, 539
HpyF3I CTNAG 6 cut(s) 93, 201, 232, 248, 522, 821
Hsp92I GRCGYC 1 cut(s) 124
Hsp92II CATG 2 cut(s) 430, 921
KroI GCCGGC 1 cut(s) 120
KroNI GCCGGC 1 cut(s) 122
Kzo9I GATC 1 cut(s) 226
LmnI GCTCC 2 cut(s) 280, 798
Lsp1109I GCAGC 7 cut(s) 72, 157, 194, 217, 264, 484, 526
LweI GCATC 2 cut(s) 157, 817
MabI ACCWGGT 1 cut(s) 357
MaeI CTAG 3 cut(s) 89, 260, 677
MaeIII GTNAC 1 cut(s) 460
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MhlI GDGCHC 4 cut(s) 11, 99, 277, 523
MluCI AATT 2 cut(s) 450, 492
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 1 cut(s) 171
MreI CGCCGGCG 1 cut(s) 120
MroNI GCCGGC 1 cut(s) 120
MseI TTAA 1 cut(s) 74
MspA1I CMGCKG 2 cut(s) 164, 236
MspI CCGG 2 cut(s) 121, 374
MspR9I CCNGG 5 cut(s) 359, 374, 516, 616, 832
MvaI CCWGG 4 cut(s) 359, 516, 616, 832
MwoI GCNNNNNNNGC 4 cut(s) 94, 170, 179, 539
NaeI GCCGGC 1 cut(s) 122
NciI CCSGG 1 cut(s) 374
NdeII GATC 1 cut(s) 226
NgoMIV GCCGGC 1 cut(s) 120
NheI GCTAGC 1 cut(s) 88
NlaIII CATG 2 cut(s) 430, 921
NlaIV GGNNCC 3 cut(s) 31, 378, 748
NmuCI GTSAC 1 cut(s) 460
PagI TCATGA 1 cut(s) 426
PdiI GCCGGC 1 cut(s) 122
PfeI GAWTC 1 cut(s) 857
PkrI GCNGC 7 cut(s) 87, 172, 184, 207, 254, 474, 541
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
Psp124BI GAGCTC 1 cut(s) 99
Psp6I CCWGG 4 cut(s) 357, 514, 614, 830
PspGI CCWGG 4 cut(s) 357, 514, 614, 830
PspN4I GGNNCC 3 cut(s) 31, 378, 748
PspPI GGNCC 4 cut(s) 30, 239, 376, 746
PstI CTGCAG 2 cut(s) 184, 802
PvuII CAGCTG 1 cut(s) 236
RsaI GTAC 2 cut(s) 575, 907
RsaNI GTAC 2 cut(s) 574, 906
SacI GAGCTC 1 cut(s) 99
SaqAI TTAA 1 cut(s) 74
SatI GCNGC 7 cut(s) 86, 171, 183, 206, 253, 473, 540
Sau3AI GATC 1 cut(s) 226
Sau96I GGNCC 4 cut(s) 30, 239, 376, 746
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 5 cut(s) 359, 374, 516, 616, 832
SduI GDGCHC 4 cut(s) 11, 99, 277, 523
SexAI ACCWGGT 1 cut(s) 357
SfaNI GCATC 2 cut(s) 157, 817
SfcI CTRYAG 2 cut(s) 180, 798
SgrAI CRCCGGYG 1 cut(s) 120
SinI GGWCC 2 cut(s) 376, 746
SmlI CTYRAG 2 cut(s) 222, 751
SmoI CTYRAG 2 cut(s) 222, 751
Sse9I AATT 2 cut(s) 450, 492
SsiI CCGC 2 cut(s) 162, 470
SspI AATATT 1 cut(s) 393
SspMI CTAG 3 cut(s) 89, 260, 677
SstI GAGCTC 1 cut(s) 99
StyD4I CCNGG 5 cut(s) 357, 372, 514, 614, 830
StyI CCWWGG 1 cut(s) 15
TaaI ACNGT 2 cut(s) 104, 623
TasI AATT 2 cut(s) 450, 492
TatI WGTACW 2 cut(s) 573, 905
TfiI GAWTC 1 cut(s) 857
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TscAI CASTG 3 cut(s) 42, 530, 628
TseFI GTSAC 1 cut(s) 460
TseI GCWGC 7 cut(s) 85, 170, 182, 205, 252, 472, 539
Tsp45I GTSAC 1 cut(s) 460
TspDTI ATGAA 5 cut(s) 17, 618, 800, 879, 906
TspRI CASTG 3 cut(s) 42, 530, 628
VpaK11BI GGWCC 2 cut(s) 376, 746
XapI RAATTY 1 cut(s) 492
XcmI CCANNNNNNNNNTGG 2 cut(s) 22, 40
XspI CTAG 3 cut(s) 89, 260, 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.