AT3G29639

transcription, DNA-templated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002519
Physical Location & Seq
Reverse (-)
11478633 .. 11480033
1401 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G29639.2

Sequence Viewer

Length: 546 bp
ATGGGATGGTTACTGCAACTGAGTATGTCTTCCGTAGTGCCTGTTGCTGGCATTTTCAAAAGTGGTGAGAAAGCAGAAACGAGCGAGTGGCCGGCGATGGTGGAAGTTAAGCGTAGAGTTAGGCTGAGTGGGTTTGGGAAATTTATTCAAGAGCTTCCCAAGTCTCGAACCCGTGCCCTAATGGTATACAAAGCTTTCTTTTGTTATCATTGTACTAGCATTACATTGAATAATCTATTGCTTCATACAACACTAGAAGTAACCCTTTTACTTCTCTTATATATCATCTTTAATCATCTCACTTTGTCTCATCTCAAAACTCTTCTGTCTTCTCTTCATGGAAACCAGAAAGCAAAGAGATTACAATTAAACACTTCACATGTATGCGTCACAGGAATGGGGACACGTTTTATGTATGCAGAACATCAACTATATAGATTTGGGTCAAATTTTGTATTAAATCCATCCAAAGAAAAGGGATGCCAATTCAGTTTTATTATGTCTCTGTATATGAGTTTCTGTGTCTGTGGGGGACATATAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0007275 GO:0008150 GO:0032501 GO:0032502 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPOC TFIIS_M

Protein Analysis

181

Amino Acids

20.59

Weight (kDa)

9.53

Isoelectric Point (pI)

39.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOC PF07744 5 - 61 7.7e-09 SPOC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 186
AcoI YGGCCR 1 cut(s) 89
AcsI RAATTY 2 cut(s) 140, 448
AfaI GTAC 1 cut(s) 214
AfiI CCNNNNNNNGG 1 cut(s) 47
AflIII ACRYGT 2 cut(s) 379, 404
AgsI TTSAA 3 cut(s) 58, 149, 229
AluBI AGCT 2 cut(s) 154, 194
AluI AGCT 2 cut(s) 154, 194
Alw26I GTCTC 3 cut(s) 168, 312, 507
AoxI GGCC 1 cut(s) 89
ApoI RAATTY 2 cut(s) 140, 448
AsuHPI GGTGA 1 cut(s) 77
BaeGI GKGCMC 1 cut(s) 178
BbsI GAAGAC 2 cut(s) 21, 321
BccI CCATC 2 cut(s) 91, 472
BcoDI GTCTC 3 cut(s) 168, 312, 507
BfaI CTAG 2 cut(s) 216, 254
BmsI GCATC 1 cut(s) 470
BpiI GAAGAC 2 cut(s) 21, 321
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse118I RCCGGY 1 cut(s) 91
BseGI GGATG 3 cut(s) 11, 464, 485
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMII CTCAG 2 cut(s) 11, 116
BseSI GKGCMC 1 cut(s) 178
BshFI GGCC 1 cut(s) 91
BsiSI CCGG 1 cut(s) 92
BslFI GGGAC 1 cut(s) 415
BslI CCNNNNNNNGG 1 cut(s) 47
BsmAI GTCTC 3 cut(s) 168, 312, 507
BsmFI GGGAC 1 cut(s) 415
BsnI GGCC 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 178
BspANI GGCC 1 cut(s) 91
BspCNI CTCAG 2 cut(s) 12, 117
BsrFI RCCGGY 1 cut(s) 91
BssAI RCCGGY 1 cut(s) 91
BssNAI GTATAC 1 cut(s) 187
Bst1107I GTATAC 1 cut(s) 187
Bst6I CTCTTC 2 cut(s) 327, 339
BstC8I GCNNGC 2 cut(s) 49, 93
BstDEI CTNAG 2 cut(s) 20, 125
BstF5I GGATG 3 cut(s) 11, 464, 485
BstMAI GTCTC 3 cut(s) 168, 312, 507
BstNSI RCATGY 1 cut(s) 383
BstSLI GKGCMC 1 cut(s) 178
BstV2I GAAGAC 2 cut(s) 21, 321
BstZ17I GTATAC 1 cut(s) 187
BsuRI GGCC 1 cut(s) 91
BtgZI GCGATG 1 cut(s) 110
BtsCI GGATG 3 cut(s) 11, 464, 485
Cac8I GCNNGC 2 cut(s) 49, 93
Cfr10I RCCGGY 1 cut(s) 91
CseI GACGC 1 cut(s) 376
Csp6I GTAC 1 cut(s) 213
CviAII CATG 2 cut(s) 338, 380
CviJI RGCY 4 cut(s) 91, 124, 154, 194
CviKI_1 RGCY 4 cut(s) 91, 124, 154, 194
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 2 cut(s) 20, 125
EaeI YGGCCR 1 cut(s) 89
Eam1104I CTCTTC 2 cut(s) 327, 339
EarI CTCTTC 2 cut(s) 327, 339
FaeI CATG 2 cut(s) 341, 383
FalI AAGNNNNNCTT 2 cut(s) 249, 281
FaqI GGGAC 1 cut(s) 415
FatI CATG 2 cut(s) 337, 379
FblI GTMKAC 1 cut(s) 186
FokI GGATG 3 cut(s) 18, 451, 492
FspBI CTAG 2 cut(s) 216, 254
HaeIII GGCC 1 cut(s) 91
HapII CCGG 1 cut(s) 92
HgaI GACGC 1 cut(s) 376
Hin1II CATG 2 cut(s) 341, 383
HindIII AAGCTT 1 cut(s) 192
HpaII CCGG 1 cut(s) 92
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 187
Hpy188III TCNNGA 2 cut(s) 149, 165
Hpy8I GTNNAC 1 cut(s) 187
HpyCH4IV ACGT 1 cut(s) 406
HpyCH4V TGCA 2 cut(s) 16, 419
HpyF3I CTNAG 2 cut(s) 20, 125
HpySE526I ACGT 1 cut(s) 406
Hsp92II CATG 2 cut(s) 341, 383
KroI GCCGGC 1 cut(s) 91
KroNI GCCGGC 1 cut(s) 93
LpnPI CCDG 5 cut(s) 33, 54, 105, 359, 378
LweI GCATC 1 cut(s) 470
MaeI CTAG 2 cut(s) 216, 254
MaeII ACGT 1 cut(s) 406
MaeIII GTNAC 3 cut(s) 9, 259, 388
MboII GAAGA 4 cut(s) 21, 314, 321, 326
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 4 cut(s) 140, 365, 448, 485
MroNI GCCGGC 1 cut(s) 91
MseI TTAA 4 cut(s) 108, 291, 368, 458
MslI CAYNNNNRTG 2 cut(s) 382, 395
MspI CCGG 1 cut(s) 92
NaeI GCCGGC 1 cut(s) 93
NgoMIV GCCGGC 1 cut(s) 91
NlaIII CATG 2 cut(s) 341, 383
NmuCI GTSAC 1 cut(s) 388
NspI RCATGY 1 cut(s) 383
PciI ACATGT 1 cut(s) 379
PdiI GCCGGC 1 cut(s) 93
PscI ACATGT 1 cut(s) 379
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
RseI CAYNNNNRTG 2 cut(s) 382, 395
SaqAI TTAA 4 cut(s) 108, 291, 368, 458
SduI GDGCHC 1 cut(s) 178
SetI ASST 3 cut(s) 156, 196, 409
SfaNI GCATC 1 cut(s) 470
SmiMI CAYNNNNRTG 2 cut(s) 382, 395
Sse9I AATT 4 cut(s) 140, 365, 448, 485
SspMI CTAG 2 cut(s) 216, 254
TaiI ACGT 1 cut(s) 409
TaqI TCGA 1 cut(s) 166
TasI AATT 4 cut(s) 140, 365, 448, 485
TatI WGTACW 1 cut(s) 212
Tru1I TTAA 4 cut(s) 108, 291, 368, 458
Tru9I TTAA 4 cut(s) 108, 291, 368, 458
TseFI GTSAC 1 cut(s) 388
Tsp45I GTSAC 1 cut(s) 388
TspDTI ATGAA 2 cut(s) 233, 326
TspGWI ACGGA 1 cut(s) 22
XapI RAATTY 2 cut(s) 140, 448
XceI RCATGY 1 cut(s) 383
XmiI GTMKAC 1 cut(s) 186
XspI CTAG 2 cut(s) 216, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.