Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008049.1

Orthogroup ID

OG0002519

Physical Location & Seq

Genomic Coordinates Reverse (-)

575 .. 4923

Gene Structure 4349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008049.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3273 bp

atggaaacgggtcagctggaacccattttgaaaaatatgggctcatcaacaccagaaatccaaatgggaggaatgggttctgtatctagtggtcctggatcacagcagtttctgatatcaagcagccagatggaaatgatgcctaattatactagttcacagggattatctcaagcatacatgcaaatgggacacattgccaatgctaatggtaatcttggttcacagaagctttttacacctagcaatcaatttggagagataggttccttgcctacaaatgtgggatcatatcagttgttggcctcaatgaagagaaaggcaccattggaacccatgtttcttgaccctgggactcatcagttgttgatgccacacaagcgggtcgcacaattggaacacagaccatggttgcaacaagcgccggcagcaaacaaaagagctgtgcaactggaatccatggccagtgctccagggtctcagaatatgctggccccaaataagaaaatggtaaagatggaatccttctctggtagatctgggcctcagcggtcttcaagtcaaaagaatcaaacttcacagatgcaaccatctccaaaggctcaaaatgaatcatttgaatctgtaaggtccaagatgagggaaacattagctgctgctttggctttggttaatcagcagcaagataaatctccagaatcagaaaacaagtctcaggggaaaacacaggagagttctgggcctgttaaacatgaatttaaagaagagcccaaggagacttttccttccggtgaaacttgttccactccgaaaaccaacattgcagaaagtgctggccaaagcattatgtccaatgcaaatactagtgattctacattggcctcaatatgtgatgggaaggagttccaatcaagtagtattttgccttatgatgtttcatttggtgataacttgtttgtcaaagatgaacttttacagggaaacgggctttcctgggtactggattctgatattgaaatggctgacagaaatgaaattccacctgctgtaaaacaagagtcagatcaagagatgagacatccagaagaacaagcagttcaatctcttgaacaggtggcagttcaatctccagaacagctggcctttgaaattgaagccgaactattcaaattatttggtggtgtgaataagaagtataaagagaagggaaggtcccttttgttcaatctaaaagatcgtaataatccagaactgagggagagagttatgtctggagaaataactccagaacgtttgtgttctatgactgcagaggaacttgcttcaaaggagctttctgagtggcggatggcaaaggcagaagagcttgcacaaatggtagttttacctgattcagaacttgatatgagacgcttagtgaagaaaacacacaagggtgaagttgaagtcgaacaatatgataacactccaatggaggtcccaatctcacatgatcagggccaaccaagaagcaaggagacagaagtatctacccctctgcaatctgttaagctcaggaacgagggcaaagctcgacgccaaaatggtaatgaagaggagtcgtttacttttccttcaagcgatgggagtgatttattgcaagggcttatggtggatgatgggttgaaagatcttcctccaattgtctcgctagatgagttcatggaatccttggataatgagccaccgtttgagattccacctgagaaactgtcacccgtctcagaaaaggagaactcagagactggctcagaatcaaagtcttctcgtttaagtcccaaagattctgttcattcttcctctccaaaacttgatgaaattgatgcaacagattcaaagcctgaagctgttatcaaaactgaagacaatcctgctgtgataaaaaccagcgacagtgctggtgtgaagtccggtgacactatcgctgatgtgaaatccggtgacactatcgctgatgtgaagtccggtgacagtcttgaaaacacagaatctacacctgttcagaaacccaagggcgaacatttgtggggaggttccctccagctgagtatctcgaccaaggcctctgttattggcctctttaaaagcggtgaaaaaacctccgcaaaagactggcctgggtctctcgagatcaagggcagagtcagactcgatgcttttgagaagttcctgcaagagcttccacaatcccgaagtcgtgctgttatggttgtgcattttgttcttaaagaggggtcgtcagagactgaatctgcaagccttcgtgaggtccgagattcttatatttcagatgagagagtgggttttgctgagccttgttctggtgttgaactatatttttgccctccccataataaaacttgtgacatgctcagcaagatcattcagaaggaacacgttgaggcactgaacgctattgataatggccttattggtgttattgtgtggagaaagttaacttcccctaaatcatcttcgcaccagaaacacgcttcaaaaaagcaacactatagtagttctacttctaggaggcatcatgatacaaattcgaatgccaattacaattccaaaccttcccagcctagggtcttacctcccacccatactaaagtaacagatgatgatgaggacgaagttcctcctggatttggccctccggcttcccgggacgatgatgaccttcctgaattcaattatagtggtgcgtcaaatccgtctgtgccacagttttctacccaaaggtcctctagggggcctgggatgtaccctgagtctcagactcctcgccctgtagataaaatgagagagctgattcttaaatatggacaaaatgacagccgtgcatcatggaatgatgatgatgatgatgatgacgacatcccagagtggcagccaaatccaaccccatcccagtaccagcggccacagctacaaccagtgaacaactaccagcaaccaatgctgcgagcccatataggttctccgcttcagcagcagccattgcaaaccccgcaaccccaaatgcatgtggcatcaggcttacagactcctagtccttattggcagcaagggaatcagtgggctcctcctcctccacagagtggcggcgtgtgggcgactaatgtagcttgtcaaccagaatcagggcagttttatggagaacctgatagaggaacagcaggtcagccgggaatagcctggcgacagaacgctcctagaagtagagggttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0032501 GO:0032502 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPOC TFIIS_M

Protein Analysis

1090

Amino Acids

120.13

Weight (kDa)

5.17

Isoelectric Point (pI)

62.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002519)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29639 AT3G29639 AT5G11430 AT5G11430 AT5G11430 AT5G11430 AT5G11430 AT5G11430 AT5G25520 AT5G25520 AT5G25520 AT5G25520 AT5G25520 AT5G25520 AT5G25520
fragaria_vesca	FvH4_2g30140 FvH4_2g30140 FvH4_2g30140 FvH4_2g30140 FvH4_2g30140 FvH4_2g30140
malus_domestica	MD08G1136900.v1.1 MD15G1115600.v1.1
prunus_persica	Prupe.7G018800_v2.0.a1 Prupe.7G018800_v2.0.a1 Prupe.7G018800_v2.0.a1 Prupe.7G018800_v2.0.a1 Prupe.7G018800_v2.0.a1
pyrus_communis	pycom08g11560 pycom15g10420
rosa_chinensis	RchiOBHm_Chr6g0312791
rosa_laevigata	RLG00000010299
rosa_multiflora	Rmu_sc0008049.1_g000001
rosa_roxburghii	Rroxscaffold_7G00156490
rosa_rugosa	Rorug06G0399700
rosa_samantha	Rh6AG516700 Rh6BG528000 Rh6CG532800 Rh6DG519000 Rh6DG519100
rosa_wichuraiana	Rw6G044880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1051
Acc36I	ACCTGC	2 cut(s)	1051, 3209
AccB1I	GGYRCC	1 cut(s)	322
AccB7I	CCANNNNNTGG	1 cut(s)	3140
AciI	CCGC	9 cut(s)	382, 550, 1345, 2127, 2142, 2959, 3023, 3050, 3144
AclI	AACGTT	1 cut(s)	1291
AclWI	GGATC	2 cut(s)	106, 295
AcoI	YGGCCR	3 cut(s)	462, 835, 2960
AcsI	RAATTY	4 cut(s)	755, 1035, 2584, 2726
AcuI	CTGAAG	3 cut(s)	1902, 1920, 3011
AcyI	GRCGYC	1 cut(s)	1576
AdeI	CACNNNGTG	1 cut(s)	3140
AfaI	GTAC	3 cut(s)	999, 2804, 2954
AflIII	ACRYGT	1 cut(s)	2434
AhdI	GACNNNNNGTC	1 cut(s)	3090
AhlI	ACTAGT	2 cut(s)	152, 863
AjnI	CCWGG	8 cut(s)	94, 349, 472, 992, 2155, 2680, 2794, 3236
AleI	CACNNNNGTG	1 cut(s)	1434
Alw21I	GWGCWC	1 cut(s)	472
AlwI	GGATC	2 cut(s)	106, 295
AlwNI	CAGNNNCTG	3 cut(s)	112, 1784, 2285
Ama87I	CYCGRG	2 cut(s)	2165, 2703
ApoI	RAATTY	4 cut(s)	755, 1035, 2584, 2726
Asp700I	GAANNNNTTC	2 cut(s)	76, 902
AspA2I	CCTAGG	1 cut(s)	2621
AspLEI	GCGC	1 cut(s)	424
AsuC2I	CCSGG	3 cut(s)	2704, 2705, 3228
AsuHPI	GGTGA	8 cut(s)	803, 956, 1448, 1746, 1964, 1991, 2018, 2141
AsuII	TTCGAA	1 cut(s)	2588
AvaI	CYCGRG	2 cut(s)	2165, 2703
AvaII	GGWCC	6 cut(s)	92, 630, 1212, 1477, 2308, 2781
AvrII	CCTAGG	1 cut(s)	2621
BaeI	ACNNNNGTAYC	2 cut(s)	1509, 1542
BalI	TGGCCA	2 cut(s)	464, 837
BanI	GGYRCC	1 cut(s)	322
BanII	GRGCYC	4 cut(s)	44, 771, 3010, 3124
BarI	GAAGNNNNNNTAC	2 cut(s)	2545, 2577
BbsI	GAAGAC	3 cut(s)	546, 1794, 1908
Bbv12I	GWGCWC	1 cut(s)	472
BbvCI	CCTCAGC	1 cut(s)	546
BccI	CCATC	8 cut(s)	124, 511, 598, 887, 1342, 1616, 1652, 2953
BceAI	ACGGC	1 cut(s)	2862
BciT130I	CCWGG	8 cut(s)	96, 351, 474, 994, 2157, 2682, 2796, 3238
BclI	TGATCA	1 cut(s)	1492
BcnI	CCSGG	3 cut(s)	2704, 2705, 3228
BcuI	ACTAGT	2 cut(s)	152, 863
BfmI	CTRYAG	3 cut(s)	1308, 2548, 2829
BfoI	RGCGCY	1 cut(s)	425
BfuAI	ACCTGC	2 cut(s)	1051, 3209
BglII	AGATCT	2 cut(s)	536, 1669
BlnI	CCTAGG	1 cut(s)	2621
BlpI	GCTNAGC	2 cut(s)	2349, 2411
Bme18I	GGWCC	6 cut(s)	92, 630, 1212, 1477, 2308, 2781
BmeRI	GACNNNNNGTC	1 cut(s)	3090
BmeT110I	CYCGRG	2 cut(s)	2165, 2703
BmrI	ACTGGG	1 cut(s)	2944
BmsI	GCATC	8 cut(s)	129, 360, 573, 1852, 2182, 2581, 2891, 3080
BmuI	ACTGGG	1 cut(s)	2944
BpiI	GAAGAC	3 cut(s)	546, 1794, 1908
BplI	GAGNNNNNCTC	6 cut(s)	1772, 1804, 2061, 2093, 2172, 2204
BpmI	CTGGAG	6 cut(s)	456, 678, 1113, 1269, 1293, 2063
Bpu10I	CCTNAGC	2 cut(s)	546, 1553
Bpu1102I	GCTNAGC	2 cut(s)	2349, 2411
Bpu14I	TTCGAA	1 cut(s)	2588
BpuEI	CTTGAG	1 cut(s)	156
BpuMI	CCSGG	3 cut(s)	2704, 2705, 3228
BsaHI	GRCGYC	1 cut(s)	1576
BsaI	GGTCTC	2 cut(s)	483, 2166
BsaWI	WCCGGW	4 cut(s)	788, 1949, 1976, 2003
Bse118I	RCCGGY	1 cut(s)	424
Bse1I	ACTGG	7 cut(s)	456, 465, 1005, 1789, 2156, 2950, 2975
Bse3DI	GCAATG	3 cut(s)	195, 819, 3038
BseBI	CCWGG	8 cut(s)	96, 351, 474, 994, 2157, 2682, 2796, 3238
BseGI	GGATG	6 cut(s)	1078, 1353, 1660, 2805, 2916, 2945
BseMI	GCAATG	3 cut(s)	195, 819, 3038
BseNI	ACTGG	7 cut(s)	456, 465, 1005, 1789, 2156, 2950, 2975
BseRI	GAGGAG	5 cut(s)	1610, 2811, 3114, 3117, 3120
BseYI	CCCAGC	1 cut(s)	2616
BshNI	GGYRCC	1 cut(s)	322
BsiHKAI	GWGCWC	1 cut(s)	472
BsiHKCI	CYCGRG	2 cut(s)	2165, 2703
BsiSI	CCGG	8 cut(s)	425, 789, 1950, 1977, 2004, 2696, 2704, 3227
BslFI	GGGAC	6 cut(s)	204, 367, 1198, 1463, 1800, 2720
BsmBI	CGTCTC	2 cut(s)	1402, 1765
BsmFI	GGGAC	6 cut(s)	204, 367, 1198, 1463, 1800, 2720
BsmI	GAATGC	1 cut(s)	2596
Bso31I	GGTCTC	2 cut(s)	483, 2166
BsoBI	CYCGRG	2 cut(s)	2165, 2703
Bsp119I	TTCGAA	1 cut(s)	2588
Bsp1286I	GDGCHC	5 cut(s)	44, 472, 771, 3010, 3124
Bsp143I	GATC	9 cut(s)	98, 287, 536, 1063, 1234, 1492, 1669, 2169, 2418
Bsp1720I	GCTNAGC	2 cut(s)	2349, 2411
Bsp19I	CCATGG	2 cut(s)	407, 459
BspACI	CCGC	9 cut(s)	382, 550, 1345, 2127, 2142, 2959, 3023, 3050, 3144
BspHI	TCATGA	1 cut(s)	2575
BspMAI	CTGCAG	1 cut(s)	1312
BspMI	ACCTGC	2 cut(s)	1051, 3209
BspPI	GGATC	2 cut(s)	106, 295
BspQI	GCTCTTC	2 cut(s)	759, 1356
BspT104I	TTCGAA	1 cut(s)	2588
BspT107I	GGYRCC	1 cut(s)	322
BspTNI	GGTCTC	2 cut(s)	483, 2166
BsrDI	GCAATG	3 cut(s)	195, 819, 3038
BsrFI	RCCGGY	1 cut(s)	424
BsrI	ACTGG	7 cut(s)	456, 465, 1005, 1789, 2156, 2950, 2975
BssAI	RCCGGY	1 cut(s)	424
BssMI	GATC	9 cut(s)	98, 287, 536, 1063, 1234, 1492, 1669, 2169, 2418
BssNI	GRCGYC	1 cut(s)	1576
BssT1I	CCWWGG	7 cut(s)	407, 459, 771, 1710, 2049, 2097, 2621
Bst2UI	CCWGG	8 cut(s)	96, 351, 474, 994, 2157, 2682, 2796, 3238
Bst4CI	ACNGT	5 cut(s)	1728, 1752, 1934, 2012, 2766
Bst6I	CTCTTC	4 cut(s)	308, 759, 1356, 1587
BstACI	GRCGYC	1 cut(s)	1576
BstAPI	GCANNNNNTGC	3 cut(s)	830, 2998, 3040
BstBI	TTCGAA	1 cut(s)	2588
BstC8I	GCNNGC	7 cut(s)	426, 492, 835, 1140, 1368, 2296, 3006
BstDSI	CCRYGG	2 cut(s)	407, 459
BstENI	CCTNNNNNAGG	2 cut(s)	2303, 3207
BstF5I	GGATG	6 cut(s)	1078, 1353, 1660, 2805, 2916, 2945
BstH2I	RGCGCY	1 cut(s)	425
BstHHI	GCGC	1 cut(s)	424
BstKTI	GATC	9 cut(s)	101, 290, 539, 1066, 1237, 1495, 1672, 2172, 2421
BstMBI	GATC	9 cut(s)	98, 287, 536, 1063, 1234, 1492, 1669, 2169, 2418
BstNI	CCWGG	8 cut(s)	96, 351, 474, 994, 2157, 2682, 2796, 3238
BstNSI	RCATGY	3 cut(s)	184, 2410, 3068
BstSFI	CTRYAG	3 cut(s)	1308, 2548, 2829
BstV2I	GAAGAC	3 cut(s)	546, 1794, 1908
BstX2I	RGATCY	2 cut(s)	536, 1669
BstYI	RGATCY	2 cut(s)	536, 1669
BtgI	CCRYGG	2 cut(s)	407, 459
BtgZI	GCGATG	1 cut(s)	1635
BtsCI	GGATG	6 cut(s)	1078, 1353, 1660, 2805, 2916, 2945
BtsIMutI	CAGTG	5 cut(s)	472, 1939, 2444, 2982, 3122
BveI	ACCTGC	2 cut(s)	1051, 3209
Cac8I	GCNNGC	7 cut(s)	426, 492, 835, 1140, 1368, 2296, 3006
CaiI	CAGNNNCTG	3 cut(s)	112, 1784, 2285
CciI	TCATGA	1 cut(s)	2575
CfoI	GCGC	1 cut(s)	424
Cfr10I	RCCGGY	1 cut(s)	424
Cfr9I	CCCGGG	1 cut(s)	2703
CseI	GACGC	3 cut(s)	1419, 1584, 2733
Csp6I	GTAC	3 cut(s)	998, 2803, 2953
CspCI	CAANNNNNGTGG	2 cut(s)	2719, 2754
CviQI	GTAC	3 cut(s)	998, 2803, 2953
DpnI	GATC	9 cut(s)	100, 289, 538, 1065, 1236, 1494, 1671, 2171, 2420
DpnII	GATC	9 cut(s)	98, 287, 536, 1063, 1234, 1492, 1669, 2169, 2418
DraI	TTTAAA	2 cut(s)	760, 2122
DraIII	CACNNNGTG	1 cut(s)	3140
DriI	GACNNNNNGTC	1 cut(s)	3090
EaeI	YGGCCR	3 cut(s)	462, 835, 2960
Eam1104I	CTCTTC	4 cut(s)	308, 759, 1356, 1587
Eam1105I	GACNNNNNGTC	1 cut(s)	3090
EarI	CTCTTC	4 cut(s)	308, 759, 1356, 1587
EciI	GGCGGA	1 cut(s)	1360
Eco130I	CCWWGG	7 cut(s)	407, 459, 771, 1710, 2049, 2097, 2621
Eco147I	AGGCCT	1 cut(s)	2102
Eco24I	GRGCYC	4 cut(s)	44, 771, 3010, 3124
Eco31I	GGTCTC	2 cut(s)	483, 2166
Eco32I	GATATC	1 cut(s)	117
Eco47I	GGWCC	6 cut(s)	92, 630, 1212, 1477, 2308, 2781
Eco57I	CTGAAG	3 cut(s)	1902, 1920, 3011
Eco88I	CYCGRG	2 cut(s)	2165, 2703
EcoNI	CCTNNNNNAGG	2 cut(s)	2303, 3207
EcoO109I	RGGNCCY	4 cut(s)	1212, 1477, 2781, 2792
EcoRI	GAATTC	1 cut(s)	2726
EcoRII	CCWGG	8 cut(s)	94, 349, 472, 992, 2155, 2680, 2794, 3236
EcoRV	GATATC	1 cut(s)	117
EcoT14I	CCWWGG	7 cut(s)	407, 459, 771, 1710, 2049, 2097, 2621
EcoT22I	ATGCAT	1 cut(s)	3066
EcoT38I	GRGCYC	4 cut(s)	44, 771, 3010, 3124
ErhI	CCWWGG	7 cut(s)	407, 459, 771, 1710, 2049, 2097, 2621
Esp3I	CGTCTC	2 cut(s)	1402, 1765
FalI	AAGNNNNNCTT	2 cut(s)	954, 986
FaqI	GGGAC	6 cut(s)	204, 367, 1198, 1463, 1800, 2720
FauI	CCCGC	2 cut(s)	375, 3057
FbaI	TGATCA	1 cut(s)	1492
FokI	GGATG	6 cut(s)	1065, 1360, 1667, 2812, 2903, 2932
FriOI	GRGCYC	4 cut(s)	44, 771, 3010, 3124
GlaI	GCGC	1 cut(s)	423
GsaI	CCCAGC	1 cut(s)	2620
GsuI	CTGGAG	6 cut(s)	456, 678, 1113, 1269, 1293, 2063
HaeII	RGCGCY	1 cut(s)	425
HapII	CCGG	8 cut(s)	425, 789, 1950, 1977, 2004, 2696, 2704, 3227
HgaI	GACGC	3 cut(s)	1419, 1584, 2733
HhaI	GCGC	1 cut(s)	424
Hin1I	GRCGYC	1 cut(s)	1576
Hin6I	GCGC	1 cut(s)	422
HinP1I	GCGC	1 cut(s)	422
HincII	GTYRAC	2 cut(s)	2496, 3173
HindII	GTYRAC	2 cut(s)	2496, 3173
HindIII	AAGCTT	1 cut(s)	230
HpaI	GTTAAC	1 cut(s)	2496
HpaII	CCGG	8 cut(s)	425, 789, 1950, 1977, 2004, 2696, 2704, 3227
HphI	GGTGA	8 cut(s)	803, 956, 1448, 1746, 1964, 1991, 2018, 2141
Hpy166II	GTNNAC	6 cut(s)	158, 224, 1605, 2496, 2980, 3173
Hpy8I	GTNNAC	6 cut(s)	158, 224, 1605, 2496, 2980, 3173
Hpy99I	CGWCG	1 cut(s)	1578
HpyCH4III	ACNGT	5 cut(s)	1728, 1752, 1934, 2012, 2766
HpyCH4IV	ACGT	2 cut(s)	1291, 2436
HpySE526I	ACGT	2 cut(s)	1291, 2436
Hsp92I	GRCGYC	1 cut(s)	1576
HspAI	GCGC	1 cut(s)	422
KroI	GCCGGC	1 cut(s)	424
KroNI	GCCGGC	1 cut(s)	426
Ksp22I	TGATCA	1 cut(s)	1492
KspAI	GTTAAC	1 cut(s)	2496
Kzo9I	GATC	9 cut(s)	98, 287, 536, 1063, 1234, 1492, 1669, 2169, 2418
LguI	GCTCTTC	2 cut(s)	759, 1356
LmnI	GCTCC	4 cut(s)	475, 1330, 3127, 3256
LweI	GCATC	8 cut(s)	129, 360, 573, 1852, 2182, 2581, 2891, 3080
MaeII	ACGT	2 cut(s)	1291, 2436
MaeIII	GTNAC	6 cut(s)	1752, 1952, 1979, 2006, 2402, 2650
MalI	GATC	9 cut(s)	100, 289, 538, 1065, 1236, 1494, 1671, 2171, 2420
MboI	GATC	9 cut(s)	98, 287, 536, 1063, 1234, 1492, 1669, 2169, 2418
MfeI	CAATTG	2 cut(s)	392, 1680
MflI	RGATCY	2 cut(s)	536, 1669
MhlI	GDGCHC	5 cut(s)	44, 472, 771, 3010, 3124
MlsI	TGGCCA	2 cut(s)	464, 837
MluNI	TGGCCA	2 cut(s)	464, 837
MlyI	GAGTC	8 cut(s)	349, 1067, 1607, 2181, 2190, 2812, 2819, 3079
MmeI	TCCRAC	1 cut(s)	2963
Mox20I	TGGCCA	2 cut(s)	464, 837
Mph1103I	ATGCAT	1 cut(s)	3066
MroNI	GCCGGC	1 cut(s)	424
MroXI	GAANNNNTTC	2 cut(s)	76, 902
MscI	TGGCCA	2 cut(s)	464, 837
MslI	CAYNNNNRTG	3 cut(s)	185, 1434, 1469
Msp20I	TGGCCA	2 cut(s)	464, 837
MspA1I	CMGCKG	5 cut(s)	16, 550, 1138, 2083, 2959
MspI	CCGG	8 cut(s)	425, 789, 1950, 1977, 2004, 2696, 2704, 3227
MunI	CAATTG	2 cut(s)	392, 1680
Mva1269I	GAATGC	1 cut(s)	2596
MvaI	CCWGG	8 cut(s)	96, 351, 474, 994, 2157, 2682, 2796, 3238
NaeI	GCCGGC	1 cut(s)	426
NciI	CCSGG	3 cut(s)	2704, 2705, 3228
NcoI	CCATGG	2 cut(s)	407, 459
NdeII	GATC	9 cut(s)	98, 287, 536, 1063, 1234, 1492, 1669, 2169, 2418
NgoMIV	GCCGGC	1 cut(s)	424
NmuCI	GTSAC	5 cut(s)	1752, 1952, 1979, 2006, 2402
NsiI	ATGCAT	1 cut(s)	3066
NspI	RCATGY	3 cut(s)	184, 2410, 3068
NspV	TTCGAA	1 cut(s)	2588
OliI	CACNNNNGTG	1 cut(s)	1434
PaeR7I	CTCGAG	1 cut(s)	2165
PagI	TCATGA	1 cut(s)	2575
PaqCI	CACCTGC	1 cut(s)	1051
PasI	CCCWGGG	1 cut(s)	350
PceI	AGGCCT	1 cut(s)	2102
PciSI	GCTCTTC	2 cut(s)	759, 1356
PcsI	WCGNNNNNNNCGW	1 cut(s)	2308
PctI	GAATGC	1 cut(s)	2596
PdiI	GCCGGC	1 cut(s)	426
PdmI	GAANNNNTTC	2 cut(s)	76, 902
PflMI	CCANNNNNTGG	1 cut(s)	3140
PfoI	TCCNGGA	2 cut(s)	94, 2680
PleI	GAGTC	8 cut(s)	349, 1066, 1606, 2181, 2189, 2812, 2818, 3079
PpsI	GAGTC	8 cut(s)	349, 1066, 1606, 2181, 2189, 2812, 2818, 3079
PpuMI	RGGWCCY	3 cut(s)	1212, 1477, 2781
Psp1406I	AACGTT	1 cut(s)	1291
Psp5II	RGGWCCY	3 cut(s)	1212, 1477, 2781
Psp6I	CCWGG	8 cut(s)	94, 349, 472, 992, 2155, 2680, 2794, 3236
PspFI	CCCAGC	1 cut(s)	2616
PspGI	CCWGG	8 cut(s)	94, 349, 472, 992, 2155, 2680, 2794, 3236
PspPPI	RGGWCCY	3 cut(s)	1212, 1477, 2781
PsrI	GAACNNNNNNTAC	2 cut(s)	205, 237
PstI	CTGCAG	1 cut(s)	1312
PstNI	CAGNNNCTG	3 cut(s)	112, 1784, 2285
PsuI	RGATCY	2 cut(s)	536, 1669
PvuII	CAGCTG	3 cut(s)	16, 1138, 2083
RsaI	GTAC	3 cut(s)	999, 2804, 2954
RsaNI	GTAC	3 cut(s)	998, 2803, 2953
RseI	CAYNNNNRTG	3 cut(s)	185, 1434, 1469
SapI	GCTCTTC	2 cut(s)	759, 1356
Sau3AI	GATC	9 cut(s)	98, 287, 536, 1063, 1234, 1492, 1669, 2169, 2418
SchI	GAGTC	8 cut(s)	349, 1067, 1607, 2181, 2190, 2812, 2819, 3079
SduI	GDGCHC	5 cut(s)	44, 472, 771, 3010, 3124
SfaNI	GCATC	8 cut(s)	129, 360, 573, 1852, 2182, 2581, 2891, 3080
SfcI	CTRYAG	3 cut(s)	1308, 2548, 2829
Sfr274I	CTCGAG	1 cut(s)	2165
SfuI	TTCGAA	1 cut(s)	2588
SinI	GGWCC	6 cut(s)	92, 630, 1212, 1477, 2308, 2781
SlaI	CTCGAG	1 cut(s)	2165
SmaI	CCCGGG	1 cut(s)	2705
SmiMI	CAYNNNNRTG	3 cut(s)	185, 1434, 1469
SmlI	CTYRAG	2 cut(s)	171, 2165
SmoI	CTYRAG	2 cut(s)	171, 2165
SpeI	ACTAGT	2 cut(s)	152, 863
SseBI	AGGCCT	1 cut(s)	2102
SsiI	CCGC	9 cut(s)	382, 550, 1345, 2127, 2142, 2959, 3023, 3050, 3144
StuI	AGGCCT	1 cut(s)	2102
StyI	CCWWGG	7 cut(s)	407, 459, 771, 1710, 2049, 2097, 2621
TaaI	ACNGT	5 cut(s)	1728, 1752, 1934, 2012, 2766
TaiI	ACGT	2 cut(s)	1294, 2439
TaqI	TCGA	6 cut(s)	1449, 1573, 2093, 2166, 2190, 2588
TauI	GCSGC	2 cut(s)	2962, 3147
TscAI	CASTG	5 cut(s)	472, 1939, 2451, 2982, 3122
TseFI	GTSAC	5 cut(s)	1752, 1952, 1979, 2006, 2402
Tsp45I	GTSAC	5 cut(s)	1752, 1952, 1979, 2006, 2402
TspGWI	ACGGA	1 cut(s)	2742
TspMI	CCCGGG	1 cut(s)	2703
TspRI	CASTG	5 cut(s)	472, 1939, 2451, 2982, 3122
Van91I	CCANNNNNTGG	1 cut(s)	3140
VpaK11BI	GGWCC	6 cut(s)	92, 630, 1212, 1477, 2308, 2781
XagI	CCTNNNNNAGG	2 cut(s)	2303, 3207
XapI	RAATTY	4 cut(s)	755, 1035, 2584, 2726
XceI	RCATGY	3 cut(s)	184, 2410, 3068
XhoI	CTCGAG	1 cut(s)	2165
XmaI	CCCGGG	1 cut(s)	2703
XmaJI	CCTAGG	1 cut(s)	2621
XmnI	GAANNNNTTC	2 cut(s)	76, 902
Zsp2I	ATGCAT	1 cut(s)	3066

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.