Transcription factor S-II (TFIIS), central domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G29639 AT3G29639 AT5G11430 AT5G11430 AT5G11430 AT5G11430 AT5G11430 AT5G11430 AT5G25520 AT5G25520 AT5G25520 AT5G25520 AT5G25520 AT5G25520 AT5G25520 |
| fragaria_vesca | FvH4_2g30140 FvH4_2g30140 FvH4_2g30140 FvH4_2g30140 FvH4_2g30140 FvH4_2g30140 |
| malus_domestica | MD08G1136900.v1.1 MD15G1115600.v1.1 |
| prunus_persica | Prupe.7G018800_v2.0.a1 Prupe.7G018800_v2.0.a1 Prupe.7G018800_v2.0.a1 Prupe.7G018800_v2.0.a1 Prupe.7G018800_v2.0.a1 |
| pyrus_communis | pycom08g11560 pycom15g10420 |
| rosa_chinensis | RchiOBHm_Chr6g0312791 |
| rosa_laevigata | RLG00000010299 |
| rosa_multiflora | Rmu_sc0008049.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00156490 |
| rosa_rugosa | Rorug06G0399700 |
| rosa_samantha | Rh6AG516700 Rh6BG528000 Rh6CG532800 Rh6DG519000 Rh6DG519100 |
| rosa_wichuraiana | Rw6G044880 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 333, 2078 |
| AarI | CACCTGC | 1 cut(s) | 1685 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 1724, 2770 |
| AatII | GACGTC | 1 cut(s) | 2139 |
| Acc36I | ACCTGC | 2 cut(s) | 1180, 1685 |
| AccB1I | GGYRCC | 3 cut(s) | 373, 3265, 3328 |
| AccI | GTMKAC | 2 cut(s) | 1649, 1728 |
| AccII | CGCG | 1 cut(s) | 706 |
| AccIII | TCCGGA | 1 cut(s) | 2416 |
| AcsI | RAATTY | 9 cut(s) | 268, 285, 904, 1028, 1164, 1989, 2523, 2885, 3422 |
| AcuI | CTGAAG | 7 cut(s) | 909, 1197, 1491, 1773, 1995, 1997, 3239 |
| AcyI | GRCGYC | 2 cut(s) | 374, 2136 |
| AfaI | GTAC | 5 cut(s) | 195, 2474, 2713, 3055, 3141 |
| AflIII | ACRYGT | 2 cut(s) | 2587, 2754 |
| AgeI | ACCGGT | 3 cut(s) | 2105, 3187, 3325 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2192 |
| AhlI | ACTAGT | 2 cut(s) | 2188, 2708 |
| AjiI | CACGTC | 1 cut(s) | 2757 |
| AleI | CACNNNNGTG | 1 cut(s) | 1545 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 259, 291 |
| AluBI | AGCT | 8 cut(s) | 494, 521, 724, 1394, 1444, 1757, 2371, 3016 |
| AluI | AGCT | 8 cut(s) | 494, 521, 724, 1394, 1444, 1757, 2371, 3016 |
| Alw21I | GWGCWC | 1 cut(s) | 516 |
| Alw26I | GTCTC | 8 cut(s) | 588, 675, 1242, 1513, 1822, 1932, 2728, 3211 |
| Alw44I | GTGCAC | 1 cut(s) | 512 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2018 |
| Ama87I | CYCGRG | 3 cut(s) | 2775, 2840, 2862 |
| Aor13HI | TCCGGA | 1 cut(s) | 2416 |
| AoxI | GGCC | 9 cut(s) | 961, 1251, 1774, 2253, 2306, 2617, 2848, 2927, 2942 |
| ApaLI | GTGCAC | 1 cut(s) | 512 |
| ApeKI | GCWGC | 9 cut(s) | 466, 779, 1691, 2371, 2954, 2959, 3130, 3298, 3374 |
| ApoI | RAATTY | 9 cut(s) | 268, 285, 904, 1028, 1164, 1989, 2523, 2885, 3422 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1067, 1099, 3016, 3048 |
| AsiGI | ACCGGT | 3 cut(s) | 2105, 3187, 3325 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1028 |
| AspLEI | GCGC | 5 cut(s) | 376, 475, 2117, 2858, 2959 |
| AspS9I | GGNCC | 6 cut(s) | 961, 1211, 1323, 2849, 2928, 2942 |
| AsuC2I | CCSGG | 7 cut(s) | 309, 525, 2841, 2842, 2996, 3333, 3384 |
| AsuII | TTCGAA | 3 cut(s) | 1436, 1658, 2684 |
| AvaI | CYCGRG | 3 cut(s) | 2775, 2840, 2862 |
| AvaII | GGWCC | 2 cut(s) | 1211, 1323 |
| AxyI | CCTNAGG | 1 cut(s) | 897 |
| BaeGI | GKGCMC | 1 cut(s) | 516 |
| BamHI | GGATCC | 1 cut(s) | 187 |
| BanI | GGYRCC | 3 cut(s) | 373, 3265, 3328 |
| BanII | GRGCYC | 1 cut(s) | 3316 |
| BbsI | GAAGAC | 2 cut(s) | 672, 1722 |
| Bbv12I | GWGCWC | 1 cut(s) | 516 |
| BbvI | GCAGC | 9 cut(s) | 478, 766, 1678, 2358, 2966, 2971, 3142, 3310, 3361 |
| BceAI | ACGGC | 5 cut(s) | 2310, 2491, 2781, 2967, 3211 |
| BciVI | GTATCC | 2 cut(s) | 702, 1948 |
| BclI | TGATCA | 1 cut(s) | 2049 |
| BcnI | CCSGG | 7 cut(s) | 309, 525, 2841, 2842, 2996, 3333, 3384 |
| BcoDI | GTCTC | 8 cut(s) | 588, 675, 1242, 1513, 1822, 1932, 2728, 3211 |
| BcuI | ACTAGT | 2 cut(s) | 2188, 2708 |
| BfmI | CTRYAG | 4 cut(s) | 495, 587, 1419, 1692 |
| BfoI | RGCGCY | 3 cut(s) | 377, 476, 2859 |
| BfuAI | ACCTGC | 2 cut(s) | 1180, 1685 |
| BfuI | GTATCC | 2 cut(s) | 702, 1948 |
| BglII | AGATCT | 1 cut(s) | 1360 |
| BlpI | GCTNAGC | 2 cut(s) | 2564, 3378 |
| BmcAI | AGTACT | 1 cut(s) | 2713 |
| Bme18I | GGWCC | 2 cut(s) | 1211, 1323 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2192 |
| BmeT110I | CYCGRG | 3 cut(s) | 2775, 2840, 2862 |
| BmgBI | CACGTC | 1 cut(s) | 2757 |
| BmgT120I | GGNCC | 6 cut(s) | 961, 1211, 1323, 2849, 2928, 2942 |
| BmsI | GCATC | 2 cut(s) | 970, 2335 |
| BpiI | GAAGAC | 2 cut(s) | 672, 1722 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1904, 1936, 2325, 2357 |
| BpmI | CTGGAG | 4 cut(s) | 1224, 1380, 1404, 2659 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 2564, 3378 |
| Bpu14I | TTCGAA | 3 cut(s) | 1436, 1658, 2684 |
| BpuEI | CTTGAG | 2 cut(s) | 1217, 1658 |
| BpuMI | CCSGG | 7 cut(s) | 309, 525, 2841, 2842, 2996, 3333, 3384 |
| BsaAI | YACGTR | 1 cut(s) | 2476 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1359 |
| BsaHI | GRCGYC | 2 cut(s) | 374, 2136 |
| BsaI | GGTCTC | 2 cut(s) | 675, 3211 |
| BsaWI | WCCGGW | 5 cut(s) | 2105, 2416, 3121, 3187, 3325 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 303, 333, 1840, 1870 |
| Bse118I | RCCGGY | 3 cut(s) | 2105, 3187, 3325 |
| Bse1I | ACTGG | 4 cut(s) | 617, 872, 1592, 2031 |
| Bse21I | CCTNAGG | 1 cut(s) | 897 |
| Bse3DI | GCAATG | 1 cut(s) | 323 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1359 |
| BseAI | TCCGGA | 1 cut(s) | 2416 |
| BseGI | GGATG | 9 cut(s) | 120, 868, 1464, 1792, 1909, 2425, 2488, 2872, 3085 |
| BseJI | GATNNNNATC | 1 cut(s) | 1359 |
| BseMI | GCAATG | 1 cut(s) | 323 |
| BseNI | ACTGG | 4 cut(s) | 617, 872, 1592, 2031 |
| BseRI | GAGGAG | 1 cut(s) | 2923 |
| BseSI | GKGCMC | 1 cut(s) | 516 |
| BseXI | GCAGC | 9 cut(s) | 478, 766, 1678, 2358, 2966, 2971, 3142, 3310, 3361 |
| BseYI | CCCAGC | 2 cut(s) | 855, 3201 |
| BsgI | GTGCAG | 1 cut(s) | 3317 |
| Bsh1236I | CGCG | 1 cut(s) | 706 |
| BshFI | GGCC | 9 cut(s) | 963, 1253, 1776, 2255, 2308, 2619, 2850, 2929, 2944 |
| BshNI | GGYRCC | 3 cut(s) | 373, 3265, 3328 |
| BshTI | ACCGGT | 3 cut(s) | 2105, 3187, 3325 |
| BsiHKAI | GWGCWC | 1 cut(s) | 516 |
| BsiHKCI | CYCGRG | 3 cut(s) | 2775, 2840, 2862 |
| BsiWI | CGTACG | 1 cut(s) | 2472 |
| BslFI | GGGAC | 5 cut(s) | 862, 1309, 2758, 2962, 3235 |
| BsmAI | GTCTC | 8 cut(s) | 588, 675, 1242, 1513, 1822, 1932, 2728, 3211 |
| BsmBI | CGTCTC | 1 cut(s) | 1513 |
| BsmFI | GGGAC | 5 cut(s) | 862, 1309, 2758, 2962, 3235 |
| BsmI | GAATGC | 1 cut(s) | 2451 |
| BsnI | GGCC | 9 cut(s) | 963, 1253, 1776, 2255, 2308, 2619, 2850, 2929, 2944 |
| Bso31I | GGTCTC | 2 cut(s) | 675, 3211 |
| BsoBI | CYCGRG | 3 cut(s) | 2775, 2840, 2862 |
| Bsp119I | TTCGAA | 3 cut(s) | 1436, 1658, 2684 |
| Bsp1286I | GDGCHC | 2 cut(s) | 516, 3316 |
| Bsp13I | TCCGGA | 1 cut(s) | 2416 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 2564, 3378 |
| Bsp19I | CCATGG | 2 cut(s) | 458, 576 |
| BspANI | GGCC | 9 cut(s) | 963, 1253, 1776, 2255, 2308, 2619, 2850, 2929, 2944 |
| BspEI | TCCGGA | 1 cut(s) | 2416 |
| BspFNI | CGCG | 1 cut(s) | 706 |
| BspMAI | CTGCAG | 3 cut(s) | 591, 1423, 1696 |
| BspMI | ACCTGC | 2 cut(s) | 1180, 1685 |
| BspQI | GCTCTTC | 2 cut(s) | 484, 885 |
| BspT104I | TTCGAA | 3 cut(s) | 1436, 1658, 2684 |
| BspT107I | GGYRCC | 3 cut(s) | 373, 3265, 3328 |
| BspTNI | GGTCTC | 2 cut(s) | 675, 3211 |
| BsrDI | GCAATG | 1 cut(s) | 323 |
| BsrFI | RCCGGY | 3 cut(s) | 2105, 3187, 3325 |
| BsrI | ACTGG | 4 cut(s) | 617, 872, 1592, 2031 |
| BssAI | RCCGGY | 3 cut(s) | 2105, 3187, 3325 |
| BssNI | GRCGYC | 2 cut(s) | 374, 2136 |
| BssT1I | CCWWGG | 4 cut(s) | 458, 576, 1842, 1950 |
| Bst4CI | ACNGT | 8 cut(s) | 251, 1566, 1960, 2063, 2087, 2554, 2606, 2697 |
| Bst6I | CTCTTC | 5 cut(s) | 484, 885, 1239, 1697, 2326 |
| BstACI | GRCGYC | 2 cut(s) | 374, 2136 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 595, 2371, 3211 |
| BstBAI | YACGTR | 1 cut(s) | 2476 |
| BstBI | TTCGAA | 3 cut(s) | 1436, 1658, 2684 |
| BstC8I | GCNNGC | 3 cut(s) | 471, 961, 2449 |
| BstDSI | CCRYGG | 5 cut(s) | 458, 576, 704, 2292, 3089 |
| BstEII | GGTNACC | 1 cut(s) | 603 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2935 |
| BstF5I | GGATG | 9 cut(s) | 120, 868, 1464, 1792, 1909, 2425, 2488, 2872, 3085 |
| BstFNI | CGCG | 1 cut(s) | 706 |
| BstH2I | RGCGCY | 3 cut(s) | 377, 476, 2859 |
| BstHHI | GCGC | 5 cut(s) | 376, 475, 2117, 2858, 2959 |
| BstMAI | GTCTC | 8 cut(s) | 588, 675, 1242, 1513, 1822, 1932, 2728, 3211 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 373, 430, 472, 595, 785, 2371, 3211 |
| BstPI | GGTNACC | 1 cut(s) | 603 |
| BstSFI | CTRYAG | 4 cut(s) | 495, 587, 1419, 1692 |
| BstSLI | GKGCMC | 1 cut(s) | 516 |
| BstUI | CGCG | 1 cut(s) | 706 |
| BstV1I | GCAGC | 9 cut(s) | 478, 766, 1678, 2358, 2966, 2971, 3142, 3310, 3361 |
| BstV2I | GAAGAC | 2 cut(s) | 672, 1722 |
| BstX2I | RGATCY | 7 cut(s) | 187, 506, 752, 1192, 1360, 1801, 2268 |
| BstYI | RGATCY | 7 cut(s) | 187, 506, 752, 1192, 1360, 1801, 2268 |
| Bsu36I | CCTNAGG | 1 cut(s) | 897 |
| BsuI | GTATCC | 2 cut(s) | 702, 1948 |
| BsuRI | GGCC | 9 cut(s) | 963, 1253, 1776, 2255, 2308, 2619, 2850, 2929, 2944 |
| BtgI | CCRYGG | 5 cut(s) | 458, 576, 704, 2292, 3089 |
| BtrI | CACGTC | 1 cut(s) | 2757 |
| BtsCI | GGATG | 9 cut(s) | 120, 868, 1464, 1792, 1909, 2425, 2488, 2872, 3085 |
| BtsIMutI | CAGTG | 6 cut(s) | 256, 278, 680, 1973, 2038, 2146 |
| BveI | ACCTGC | 2 cut(s) | 1180, 1685 |
| Cac8I | GCNNGC | 3 cut(s) | 471, 961, 2449 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2018 |
| CfoI | GCGC | 5 cut(s) | 376, 475, 2117, 2858, 2959 |
| Cfr10I | RCCGGY | 3 cut(s) | 2105, 3187, 3325 |
| Cfr13I | GGNCC | 6 cut(s) | 961, 1211, 1323, 2849, 2928, 2942 |
| Cfr42I | CCGCGG | 1 cut(s) | 707 |
| Cfr9I | CCCGGG | 1 cut(s) | 2840 |
| CseI | GACGC | 1 cut(s) | 1607 |
| Csp6I | GTAC | 5 cut(s) | 194, 2473, 2712, 3054, 3140 |
| CspAI | ACCGGT | 3 cut(s) | 2105, 3187, 3325 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3290, 3325 |
| CviQI | GTAC | 5 cut(s) | 194, 2473, 2712, 3054, 3140 |
| DinI | GGCGCC | 1 cut(s) | 375 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1724, 2770 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2192 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1724, 2770 |
| Eam1104I | CTCTTC | 5 cut(s) | 484, 885, 1239, 1697, 2326 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2192 |
| EarI | CTCTTC | 5 cut(s) | 484, 885, 1239, 1697, 2326 |
| EciI | GGCGGA | 2 cut(s) | 1471, 3306 |
| Eco130I | CCWWGG | 4 cut(s) | 458, 576, 1842, 1950 |
| Eco147I | AGGCCT | 1 cut(s) | 1776 |
| Eco24I | GRGCYC | 1 cut(s) | 3316 |
| Eco31I | GGTCTC | 2 cut(s) | 675, 3211 |
| Eco32I | GATATC | 1 cut(s) | 2323 |
| Eco47I | GGWCC | 2 cut(s) | 1211, 1323 |
| Eco57I | CTGAAG | 7 cut(s) | 909, 1197, 1491, 1773, 1995, 1997, 3239 |
| Eco81I | CCTNAGG | 1 cut(s) | 897 |
| Eco88I | CYCGRG | 3 cut(s) | 2775, 2840, 2862 |
| Eco91I | GGTNACC | 1 cut(s) | 603 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2935 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1323, 2928, 2942 |
| EcoO65I | GGTNACC | 1 cut(s) | 603 |
| EcoRI | GAATTC | 3 cut(s) | 904, 1028, 2885 |
| EcoRV | GATATC | 1 cut(s) | 2323 |
| EcoT14I | CCWWGG | 4 cut(s) | 458, 576, 1842, 1950 |
| EcoT38I | GRGCYC | 1 cut(s) | 3316 |
| EgeI | GGCGCC | 1 cut(s) | 375 |
| EheI | GGCGCC | 1 cut(s) | 375 |
| ErhI | CCWWGG | 4 cut(s) | 458, 576, 1842, 1950 |
| Esp3I | CGTCTC | 1 cut(s) | 1513 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1083, 1115 |
| FaqI | GGGAC | 5 cut(s) | 862, 1309, 2758, 2962, 3235 |
| FauI | CCCGC | 1 cut(s) | 952 |
| FbaI | TGATCA | 1 cut(s) | 2049 |
| FblI | GTMKAC | 2 cut(s) | 1649, 1728 |
| FokI | GGATG | 9 cut(s) | 127, 855, 1471, 1799, 1916, 2432, 2495, 2879, 3072 |
| FriOI | GRGCYC | 1 cut(s) | 3316 |
| GlaI | GCGC | 5 cut(s) | 375, 474, 2116, 2857, 2958 |
| GsaI | CCCAGC | 2 cut(s) | 859, 3205 |
| GsuI | CTGGAG | 4 cut(s) | 1224, 1380, 1404, 2659 |
| HaeII | RGCGCY | 3 cut(s) | 377, 476, 2859 |
| HaeIII | GGCC | 9 cut(s) | 963, 1253, 1776, 2255, 2308, 2619, 2850, 2929, 2944 |
| HgaI | GACGC | 1 cut(s) | 1607 |
| HhaI | GCGC | 5 cut(s) | 376, 475, 2117, 2858, 2959 |
| Hin1I | GRCGYC | 2 cut(s) | 374, 2136 |
| Hin6I | GCGC | 5 cut(s) | 374, 473, 2115, 2856, 2957 |
| HinP1I | GCGC | 5 cut(s) | 374, 473, 2115, 2856, 2957 |
| HincII | GTYRAC | 1 cut(s) | 1597 |
| HindII | GTYRAC | 1 cut(s) | 1597 |
| HindIII | AAGCTT | 1 cut(s) | 722 |
| Hpy99I | CGWCG | 4 cut(s) | 2434, 2656, 3104, 3107 |
| HpyCH4III | ACNGT | 8 cut(s) | 251, 1566, 1960, 2063, 2087, 2554, 2606, 2697 |
| HpyCH4IV | ACGT | 5 cut(s) | 2136, 2475, 2589, 2651, 2756 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 373, 430, 472, 595, 785, 2371, 3211 |
| HpySE526I | ACGT | 5 cut(s) | 2136, 2475, 2589, 2651, 2756 |
| Hsp92I | GRCGYC | 2 cut(s) | 374, 2136 |
| HspAI | GCGC | 5 cut(s) | 374, 473, 2115, 2856, 2957 |
| KasI | GGCGCC | 1 cut(s) | 373 |
| Kpn2I | TCCGGA | 1 cut(s) | 2416 |
| Ksp22I | TGATCA | 1 cut(s) | 2049 |
| KspI | CCGCGG | 1 cut(s) | 707 |
| LguI | GCTCTTC | 2 cut(s) | 484, 885 |
| LmnI | GCTCC | 8 cut(s) | 526, 869, 1399, 1441, 2231, 2773, 3203, 3319 |
| Lsp1109I | GCAGC | 9 cut(s) | 478, 766, 1678, 2358, 2966, 2971, 3142, 3310, 3361 |
| LweI | GCATC | 2 cut(s) | 970, 2335 |
| MaeII | ACGT | 5 cut(s) | 2136, 2475, 2589, 2651, 2756 |
| MaeIII | GTNAC | 9 cut(s) | 18, 131, 141, 210, 603, 1073, 1882, 2194, 2476 |
| MfeI | CAATTG | 2 cut(s) | 1581, 1812 |
| MflI | RGATCY | 7 cut(s) | 187, 506, 752, 1192, 1360, 1801, 2268 |
| MhlI | GDGCHC | 2 cut(s) | 516, 3316 |
| Mly113I | GGCGCC | 1 cut(s) | 374 |
| MmeI | TCCRAC | 2 cut(s) | 2412, 2813 |
| MroI | TCCGGA | 1 cut(s) | 2416 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1028 |
| MseI | TTAA | 7 cut(s) | 795, 876, 1341, 1766, 1962, 2601, 2648 |
| MslI | CAYNNNNRTG | 4 cut(s) | 47, 1059, 1545, 2402 |
| MspA1I | CMGCKG | 1 cut(s) | 706 |
| MunI | CAATTG | 2 cut(s) | 1581, 1812 |
| Mva1269I | GAATGC | 1 cut(s) | 2451 |
| MvnI | CGCG | 1 cut(s) | 706 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 373, 430, 472, 595, 785, 2371, 3211 |
| NarI | GGCGCC | 1 cut(s) | 374 |
| NciI | CCSGG | 7 cut(s) | 309, 525, 2841, 2842, 2996, 3333, 3384 |
| NcoI | CCATGG | 2 cut(s) | 458, 576 |
| NmuCI | GTSAC | 7 cut(s) | 18, 141, 210, 603, 1073, 2194, 2476 |
| NspV | TTCGAA | 3 cut(s) | 1436, 1658, 2684 |
| OliI | CACNNNNGTG | 1 cut(s) | 1545 |
| PaqCI | CACCTGC | 1 cut(s) | 1685 |
| PceI | AGGCCT | 1 cut(s) | 1776 |
| PciSI | GCTCTTC | 2 cut(s) | 484, 885 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 2823, 3086, 3111 |
| PctI | GAATGC | 1 cut(s) | 2451 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1028 |
| Pfl23II | CGTACG | 1 cut(s) | 2472 |
| PfoI | TCCNGGA | 1 cut(s) | 523 |
| PinAI | ACCGGT | 3 cut(s) | 2105, 3187, 3325 |
| PluTI | GGCGCC | 1 cut(s) | 377 |
| Ppu21I | YACGTR | 1 cut(s) | 2476 |
| PpuMI | RGGWCCY | 1 cut(s) | 1323 |
| PsiI | TTATAA | 2 cut(s) | 333, 2078 |
| Psp5II | RGGWCCY | 1 cut(s) | 1323 |
| PspEI | GGTNACC | 1 cut(s) | 603 |
| PspFI | CCCAGC | 2 cut(s) | 855, 3201 |
| PspLI | CGTACG | 1 cut(s) | 2472 |
| PspPI | GGNCC | 6 cut(s) | 961, 1211, 1323, 2849, 2928, 2942 |
| PspPPI | RGGWCCY | 1 cut(s) | 1323 |
| PstI | CTGCAG | 3 cut(s) | 591, 1423, 1696 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2018 |
| PsuI | RGATCY | 7 cut(s) | 187, 506, 752, 1192, 1360, 1801, 2268 |
| RsaI | GTAC | 5 cut(s) | 195, 2474, 2713, 3055, 3141 |
| RsaNI | GTAC | 5 cut(s) | 194, 2473, 2712, 3054, 3140 |
| RseI | CAYNNNNRTG | 4 cut(s) | 47, 1059, 1545, 2402 |
| SacII | CCGCGG | 1 cut(s) | 707 |
| SapI | GCTCTTC | 2 cut(s) | 484, 885 |
| SaqAI | TTAA | 7 cut(s) | 795, 876, 1341, 1766, 1962, 2601, 2648 |
| Sau96I | GGNCC | 6 cut(s) | 961, 1211, 1323, 2849, 2928, 2942 |
| ScaI | AGTACT | 1 cut(s) | 2713 |
| SduI | GDGCHC | 2 cut(s) | 516, 3316 |
| SfaNI | GCATC | 2 cut(s) | 970, 2335 |
| SfcI | CTRYAG | 4 cut(s) | 495, 587, 1419, 1692 |
| SfoI | GGCGCC | 1 cut(s) | 375 |
| Sfr303I | CCGCGG | 1 cut(s) | 707 |
| SfuI | TTCGAA | 3 cut(s) | 1436, 1658, 2684 |
| SgrAI | CRCCGGYG | 1 cut(s) | 3325 |
| SgrBI | CCGCGG | 1 cut(s) | 707 |
| SinI | GGWCC | 2 cut(s) | 1211, 1323 |
| SmaI | CCCGGG | 1 cut(s) | 2842 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 47, 1059, 1545, 2402 |
| SmlI | CTYRAG | 2 cut(s) | 1196, 1673 |
| SmoI | CTYRAG | 2 cut(s) | 1196, 1673 |
| SpeI | ACTAGT | 2 cut(s) | 2188, 2708 |
| SseBI | AGGCCT | 1 cut(s) | 1776 |
| SspDI | GGCGCC | 1 cut(s) | 373 |
| StuI | AGGCCT | 1 cut(s) | 1776 |
| StyI | CCWWGG | 4 cut(s) | 458, 576, 1842, 1950 |
| TaaI | ACNGT | 8 cut(s) | 251, 1566, 1960, 2063, 2087, 2554, 2606, 2697 |
| TaiI | ACGT | 5 cut(s) | 2139, 2478, 2592, 2654, 2759 |
| TaqI | TCGA | 9 cut(s) | 359, 719, 1436, 1658, 1796, 1863, 2343, 2684, 2906 |
| TatI | WGTACW | 2 cut(s) | 2711, 3053 |
| TauI | GCSGC | 2 cut(s) | 779, 3400 |
| Tru1I | TTAA | 7 cut(s) | 795, 876, 1341, 1766, 1962, 2601, 2648 |
| Tru9I | TTAA | 7 cut(s) | 795, 876, 1341, 1766, 1962, 2601, 2648 |
| TscAI | CASTG | 6 cut(s) | 256, 285, 680, 1980, 2038, 2146 |
| TseFI | GTSAC | 7 cut(s) | 18, 141, 210, 603, 1073, 2194, 2476 |
| TseI | GCWGC | 9 cut(s) | 466, 779, 1691, 2371, 2954, 2959, 3130, 3298, 3374 |
| Tsp45I | GTSAC | 7 cut(s) | 18, 141, 210, 603, 1073, 2194, 2476 |
| TspGWI | ACGGA | 6 cut(s) | 659, 1806, 2248, 2495, 2760, 3078 |
| TspMI | CCCGGG | 1 cut(s) | 2840 |
| TspRI | CASTG | 6 cut(s) | 256, 285, 680, 1980, 2038, 2146 |
| VneI | GTGCAC | 1 cut(s) | 512 |
| VpaK11BI | GGWCC | 2 cut(s) | 1211, 1323 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2935 |
| XapI | RAATTY | 9 cut(s) | 268, 285, 904, 1028, 1164, 1989, 2523, 2885, 3422 |
| XbaI | TCTAGA | 1 cut(s) | 2183 |
| XmaI | CCCGGG | 1 cut(s) | 2840 |
| XmiI | GTMKAC | 2 cut(s) | 1649, 1728 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1028 |
| ZraI | GACGTC | 1 cut(s) | 2137 |
| ZrmI | AGTACT | 1 cut(s) | 2713 |