RLG00000010299

Transcription factor S-II (TFIIS), central domain

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
388565 .. 392957
4393 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010299

Sequence Viewer

Length: 3318 bp
ATGTCAAGCAATTTTGTGCCGCAACAGTTGCCAATATCAAGCATGGAAATGGGTCAGCTGGAACCCATTTTGAAAAATATGGGCTCATCAACACCAGAAATCCAAATGGGAGGAATTGGTTCTGTATCTAGTGGTCCTGGATCACAGCAGTTTCTGATGTCAAACAGCCAGATGGAAATGATGCCTAATTATACTGGTTCACAGGGATTATCTCAAGCATACATGCAAATGGGACACATTGCCAATGCTAACGGCAGTCTTGGTTCACAGAAGCTTTTTACACCTAGCAATCAGTTTGGAGAGATAGGTTCCTTGCCTACAAATGTGGGATCATATCAGTTGTTGGCCTCTATGAAGAGAAAGGCACCATTGGAACCCATGTTTCTTGACCCTGGGACTCATCAGTTGTTGATGCCACACAAGCGGGTCGCACAATTGGAACACAGACCATGGTTGCAACAAGCACCTGCAGCAAACAAAAGAGCTGTGCAACTGGAATCCATGGCCAGTGCTCCAGGGTCTCAGAATATGCTGGCCCCAAATAAGAAAATGGTAAAGATGGAATCCTTCTCTGGTAGATCTGGGCCACAGCGGTCTTCAAGTCAAAAGAATCAAACTTCACAGATGCAACCATCTCCAAAGGCTCAAAATGAATCATTTGAATCTGTAAGGTCCAAGATGAGGGAAACATTAGCTGCTGCTTTGGCTTTGGTTAATCAGCAGCAAGATAAATCTCCAGAATCAGAAAACAAGTCTCAGGGGAAAACACAGGAGAGTTCTGGGCCTGTTAAACATGAATTTAAAGAAGAGGCCAAGGAGACTTTTCCTTCCGGTGAAACTTGTTCCACTCCGAAAAGCAACATTGCAGAAAGTGCTGGCCAAAGCATTATGTCCGATGCAAATACTAGTGATTCTACATTGGCCTCAATATGTGATGGGAAGGAGTTCCAATCAAGTAGTATTTTGCCTTATGATGTTTCATTTGGTGATAACTTGTTTGTCAAAGATGAACTTTTGCAGGGAAACGGGCTTTCCTGGGTACTGGATTCTGATATTGAAATGGCTGACAGAAATGAAATTCCTCCTGCTGTTAAACAAGAGTCAGATCAAGAGATGAGACATCCAGAAGAACAAGCGGTTCAATCTCTTGAACAGGTGGCAGTTCAATCTCCAGAACAGCTGGCCTTTGAAATTGAAGCAGAACTATTCAAATTATTTGGTGGTGTGAATAAGAAGTATAAAGAGAAGGGAAGGTCCCTTTTGTTCAATCTAAAGGATCGCAATAATCCAGAACTGAGGGAGAGAGTTATGTCTGGAGAAATAACTCCAGAACGTTTGTGTTCTATGACTGCAGAGGAACTTGCTTCGAAGGAGCTTTCTGAGTGGCGGATGGCAAAGGCAGAAGAGCTTGCACAAATGGTAGTTTTACCTGATTCAGAACTTGATATGAGACGCTTAGTGAAGAAAACACACAAGGGTGAAGTTGAAGTTGAACAATATGATAACACTCCAATGGAGGTCCCAATCTCACATGATCAGGGCCAACCGAGAAGCAAGGAGACAGAAGTATCTACCCCTCTGAAATCCGTTAAGCCCAGGAACGAGGTCAAAGCTCGACGCCAAAATAGTAATGAAGAGGAGTCCTTTACTTTTCCTTCAAGTGATGGGAGTGATTTATTGCAAGGGCTTATGGTGGATGATGGGTTGAAAGATCTTCCTCCAATTGTCTCGCTAGATGAGTTCATGGAATCCTTGGATAATGAGCCACCGTTTGAGATTCCACCTGAGAAACCGTCACCCATCTCAGAAAAGGAGAACTCAGAGACTGGCTCAGAATCAAAGTCTTCTCGTTTAAGTCCCAAAGATTCTGTTCATTCTTCCTCTCCAAAACGTGATGAAATTGATGCAACAGATTCAAAGCCTGAAGCTGTTATCAAAACTGAAGACAATCCTGCTGTGATAAAAACCAGTGACAGTGCTGGTGTGAAGTCCGGTGACACAATCGCTGATGTGAAGTCCGGTGACACAATCGCTGATGTGAAGTCCAGTGACAGTCTTGAAAACACAGAATCTACACCTGTTCAGAAACCCAAGGGCGAACATTTGTGGGGAGGTTCCCTCCAGCTGAGTATCTCGACCAAGGCCTCTGTTATTGGCCTCTTTAAAAGCGGTGAAAAAACCTCCGCAAAAGACTGGCCTGGGTCTCTCGAGATCAAGGGCAGAGTCAGGCTCGATGCTTTTGAGAAATTCCTGCAAGAGCTTCCACAATCCCGAAGTCGTGCTGTTATGGTTGTGCATTTTGTTCTTAAAGAGGGGTCGTCAGAGACTGAATCTGCAAGCCTTCGTGAGGTCCGAGATTCGTATATTTCAGATGAGAGAGTGGGTTTTTCTGAGCCTTGTTCTGGTGTTGAACTATATTTTTGCCCTCCCCATAATAAAACTTGTGACATGCTCAGCAAGATCATTCAGAAGGAACACGTTGAGGCACTGAACACTATTGATAATGGCCTTATTGGTGTTATTGTGTGGAGAAAGTTAACTTCCCCTAAATCATCTTCGCACCAGAAACATGCTTCAAAAAAGCAACACTATAGTAGTTCTACTTCTAGGAGGCATCATGATACAAATTCGAATGCCAATTACAATTCCAAACCTTCCCAGCCTAGGGTCTTACCTCCCGCCCATACTAAAGTAACACATGATGATGAGGAGGACGAAGTTCCTCCTGGATTTGGCCCTCCGGCTTCCCGGGACGATGATGACCTTCCTGAATTCAATTATAGTGGTGCGTCAACTCCGTCTGTGCCACGGTTTTCTACCCAAAGGTCCTCTAGGGGGCCTGGGATGTACCCCGAGTCTCAGACTCCTCGCCCTGTAGATAAAATGAGAGAGCTGATTCTTAAATATGGACAAAATGACAGCCGTGCATCATGGAATGATGATGATGATGATGATGATGACATCCCAGAGTGGCAGCCAAATCCAACCCCATCTCAGTACCAGCGGCCACAGCTACAACCTGTGAACAACTACCAGCAACCAATGCTGCGAGCCCATATAGGTTCTCCACTTCAGCAGCAGCCGTTGCAAACCCCGCTACCCCAAATGCACGTGGCATCAGGCTTACAGACTCCTAGTCCTTATTGGCAGCAAGGGAATCAGTGGGCTCATCCTCCTCCACAGAGTGGCGGCGTGTGGGGGACTAGTGTAGCTTGTCAGCCAGAATCAGGGCAGTTTTATGGAGAACCTGATAGAGGAACAGCAGGTCAGCCGGGAATAGCCTGGCGACAGAACGCTCCTAGAAGTAGAGGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1106

Amino Acids

121.9

Weight (kDa)

5.27

Isoelectric Point (pI)

62.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIIS_M PF07500 387 - 469 1.2e-29 Transcription factor S-II (TFIIS), central domain
SPOC PF07744 695 - 844 1.1e-30 SPOC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 475
Acc36I ACCTGC 2 cut(s) 475, 3254
AccB1I GGYRCC 1 cut(s) 364
AccB7I CCANNNNNTGG 1 cut(s) 3185
AclI AACGTT 1 cut(s) 1333
AclWI GGATC 3 cut(s) 148, 337, 1284
AcoI YGGCCR 3 cut(s) 504, 877, 3005
AcsI RAATTY 5 cut(s) 797, 1077, 2246, 2626, 2771
AcuI CTGAAG 3 cut(s) 1944, 1962, 3056
AcvI CACGTG 1 cut(s) 3112
AcyI GRCGYC 1 cut(s) 1618
AdeI CACNNNGTG 1 cut(s) 3185
AfaI GTAC 3 cut(s) 1041, 2849, 2999
AflIII ACRYGT 1 cut(s) 2476
AhdI GACNNNNNGTC 1 cut(s) 3135
AhlI ACTAGT 2 cut(s) 905, 3203
AjnI CCWGG 9 cut(s) 136, 391, 514, 1034, 1595, 2197, 2725, 2839, 3281
AleI CACNNNNGTG 1 cut(s) 1476
Alw21I GWGCWC 1 cut(s) 514
AlwI GGATC 3 cut(s) 148, 337, 1284
AlwNI CAGNNNCTG 3 cut(s) 154, 1826, 2327
Ama87I CYCGRG 3 cut(s) 2207, 2748, 2852
ApeKI GCWGC 9 cut(s) 470, 695, 698, 721, 2974, 3046, 3076, 3079, 3148
ApoI RAATTY 5 cut(s) 797, 1077, 2246, 2626, 2771
Asp700I GAANNNNTTC 2 cut(s) 118, 944
AspA2I CCTAGG 1 cut(s) 2663
AsuC2I CCSGG 3 cut(s) 2749, 2750, 3273
AsuHPI GGTGA 7 cut(s) 845, 998, 1490, 1788, 2006, 2033, 2183
AsuII TTCGAA 2 cut(s) 1367, 2630
AvaI CYCGRG 3 cut(s) 2207, 2748, 2852
AvaII GGWCC 6 cut(s) 134, 672, 1254, 1519, 2350, 2826
AvrII CCTAGG 1 cut(s) 2663
BaeI ACNNNNGTAYC 2 cut(s) 1551, 1584
BalI TGGCCA 2 cut(s) 506, 879
BanI GGYRCC 1 cut(s) 364
BanII GRGCYC 3 cut(s) 86, 3055, 3169
BarI GAAGNNNNNNTAC 2 cut(s) 2587, 2619
BbrPI CACGTG 1 cut(s) 3112
BbsI GAAGAC 3 cut(s) 588, 1836, 1950
Bbv12I GWGCWC 1 cut(s) 514
BbvI GCAGC 9 cut(s) 482, 682, 685, 733, 2986, 3033, 3088, 3091, 3160
BccI CCATC 9 cut(s) 166, 553, 640, 929, 1384, 1658, 1694, 1808, 2998
BceAI ACGGC 3 cut(s) 268, 2907, 3067
BciT130I CCWGG 9 cut(s) 138, 393, 516, 1036, 1597, 2199, 2727, 2841, 3283
BclI TGATCA 1 cut(s) 1534
BcnI CCSGG 3 cut(s) 2749, 2750, 3273
BcuI ACTAGT 2 cut(s) 905, 3203
BfmI CTRYAG 4 cut(s) 468, 1350, 2590, 2874
BfuAI ACCTGC 2 cut(s) 475, 3254
BglII AGATCT 2 cut(s) 578, 1711
BlnI CCTAGG 1 cut(s) 2663
BlpI GCTNAGC 1 cut(s) 2453
Bme18I GGWCC 6 cut(s) 134, 672, 1254, 1519, 2350, 2826
BmeRI GACNNNNNGTC 1 cut(s) 3135
BmeT110I CYCGRG 3 cut(s) 2207, 2748, 2852
BmiI GGNNCC 9 cut(s) 63, 310, 366, 375, 537, 1256, 1521, 2116, 2838
BmsI GCATC 9 cut(s) 171, 402, 615, 886, 1894, 2224, 2623, 2936, 3125
BpiI GAAGAC 3 cut(s) 588, 1836, 1950
BplI GAGNNNNNCTC 6 cut(s) 1814, 1846, 2103, 2135, 2214, 2246
BpmI CTGGAG 6 cut(s) 498, 720, 1155, 1311, 1335, 2105
Bpu1102I GCTNAGC 1 cut(s) 2453
Bpu14I TTCGAA 2 cut(s) 1367, 2630
BpuEI CTTGAG 1 cut(s) 198
BpuMI CCSGG 3 cut(s) 2749, 2750, 3273
BsaAI YACGTR 1 cut(s) 3112
BsaHI GRCGYC 1 cut(s) 1618
BsaI GGTCTC 2 cut(s) 525, 2208
BsaWI WCCGGW 3 cut(s) 830, 1991, 2018
Bse1I ACTGG 8 cut(s) 199, 498, 507, 1047, 1831, 1968, 2046, 2198
Bse3DI GCAATG 2 cut(s) 237, 861
BseBI CCWGG 9 cut(s) 138, 393, 516, 1036, 1597, 2199, 2727, 2841, 3283
BseGI GGATG 6 cut(s) 1120, 1395, 1702, 2850, 2961, 3169
BseMI GCAATG 2 cut(s) 237, 861
BseNI ACTGG 8 cut(s) 199, 498, 507, 1047, 1831, 1968, 2046, 2198
BseRI GAGGAG 4 cut(s) 1652, 2723, 2856, 3165
BseXI GCAGC 9 cut(s) 482, 682, 685, 733, 2986, 3033, 3088, 3091, 3160
BseYI CCCAGC 1 cut(s) 2658
BshNI GGYRCC 1 cut(s) 364
BsiHKAI GWGCWC 1 cut(s) 514
BsiHKCI CYCGRG 3 cut(s) 2207, 2748, 2852
BsiSI CCGG 6 cut(s) 831, 1992, 2019, 2741, 2749, 3272
BslFI GGGAC 7 cut(s) 246, 409, 1240, 1505, 1842, 2765, 3214
BsmBI CGTCTC 1 cut(s) 1444
BsmFI GGGAC 7 cut(s) 246, 409, 1240, 1505, 1842, 2765, 3214
BsmI GAATGC 1 cut(s) 2638
Bso31I GGTCTC 2 cut(s) 525, 2208
BsoBI CYCGRG 3 cut(s) 2207, 2748, 2852
Bsp119I TTCGAA 2 cut(s) 1367, 2630
Bsp1286I GDGCHC 4 cut(s) 86, 514, 3055, 3169
Bsp143I GATC 9 cut(s) 140, 329, 578, 1105, 1276, 1534, 1711, 2211, 2460
Bsp1720I GCTNAGC 1 cut(s) 2453
Bsp19I CCATGG 2 cut(s) 449, 501
BspHI TCATGA 1 cut(s) 2617
BspLI GGNNCC 9 cut(s) 63, 310, 366, 375, 537, 1256, 1521, 2116, 2838
BspMAI CTGCAG 2 cut(s) 472, 1354
BspMI ACCTGC 2 cut(s) 475, 3254
BspPI GGATC 3 cut(s) 148, 337, 1284
BspQI GCTCTTC 1 cut(s) 1398
BspT104I TTCGAA 2 cut(s) 1367, 2630
BspT107I GGYRCC 1 cut(s) 364
BspTNI GGTCTC 2 cut(s) 525, 2208
BsrDI GCAATG 2 cut(s) 237, 861
BsrI ACTGG 8 cut(s) 199, 498, 507, 1047, 1831, 1968, 2046, 2198
BssMI GATC 9 cut(s) 140, 329, 578, 1105, 1276, 1534, 1711, 2211, 2460
BssNI GRCGYC 1 cut(s) 1618
BssT1I CCWWGG 7 cut(s) 449, 501, 813, 1752, 2091, 2139, 2663
Bst2UI CCWGG 9 cut(s) 138, 393, 516, 1036, 1597, 2199, 2727, 2841, 3283
Bst4CI ACNGT 6 cut(s) 27, 1770, 1794, 1976, 2054, 2811
Bst6I CTCTTC 4 cut(s) 350, 801, 1398, 1629
BstACI GRCGYC 1 cut(s) 1618
BstAPI GCANNNNNTGC 4 cut(s) 28, 872, 3043, 3085
BstBAI YACGTR 1 cut(s) 3112
BstBI TTCGAA 2 cut(s) 1367, 2630
BstC8I GCNNGC 6 cut(s) 534, 877, 1182, 1410, 2338, 3051
BstDSI CCRYGG 3 cut(s) 449, 501, 2807
BstENI CCTNNNNNAGG 2 cut(s) 2345, 3252
BstF5I GGATG 6 cut(s) 1120, 1395, 1702, 2850, 2961, 3169
BstKTI GATC 9 cut(s) 143, 332, 581, 1108, 1279, 1537, 1714, 2214, 2463
BstMBI GATC 9 cut(s) 140, 329, 578, 1105, 1276, 1534, 1711, 2211, 2460
BstMWI GCNNNNNNNGC 9 cut(s) 28, 421, 470, 704, 872, 3010, 3043, 3085, 3094
BstNI CCWGG 9 cut(s) 138, 393, 516, 1036, 1597, 2199, 2727, 2841, 3283
BstNSI RCATGY 3 cut(s) 226, 2452, 2573
BstSFI CTRYAG 4 cut(s) 468, 1350, 2590, 2874
BstV1I GCAGC 9 cut(s) 482, 682, 685, 733, 2986, 3033, 3088, 3091, 3160
BstV2I GAAGAC 3 cut(s) 588, 1836, 1950
BstX2I RGATCY 2 cut(s) 578, 1711
BstYI RGATCY 2 cut(s) 578, 1711
BtgI CCRYGG 3 cut(s) 449, 501, 2807
BtsCI GGATG 6 cut(s) 1120, 1395, 1702, 2850, 2961, 3169
BtsIMutI CAGTG 6 cut(s) 514, 1975, 1981, 2053, 2486, 3167
BveI ACCTGC 2 cut(s) 475, 3254
Cac8I GCNNGC 6 cut(s) 534, 877, 1182, 1410, 2338, 3051
CaiI CAGNNNCTG 3 cut(s) 154, 1826, 2327
CciI TCATGA 1 cut(s) 2617
Cfr9I CCCGGG 1 cut(s) 2748
CseI GACGC 3 cut(s) 1461, 1626, 2778
Csp6I GTAC 3 cut(s) 1040, 2848, 2998
CspCI CAANNNNNGTGG 2 cut(s) 2764, 2799
CviQI GTAC 3 cut(s) 1040, 2848, 2998
DpnI GATC 9 cut(s) 142, 331, 580, 1107, 1278, 1536, 1713, 2213, 2462
DpnII GATC 9 cut(s) 140, 329, 578, 1105, 1276, 1534, 1711, 2211, 2460
DraI TTTAAA 2 cut(s) 802, 2164
DraIII CACNNNGTG 1 cut(s) 3185
DriI GACNNNNNGTC 1 cut(s) 3135
EaeI YGGCCR 3 cut(s) 504, 877, 3005
Eam1104I CTCTTC 4 cut(s) 350, 801, 1398, 1629
Eam1105I GACNNNNNGTC 1 cut(s) 3135
EarI CTCTTC 4 cut(s) 350, 801, 1398, 1629
EciI GGCGGA 1 cut(s) 1402
Eco130I CCWWGG 7 cut(s) 449, 501, 813, 1752, 2091, 2139, 2663
Eco147I AGGCCT 1 cut(s) 2144
Eco24I GRGCYC 3 cut(s) 86, 3055, 3169
Eco31I GGTCTC 2 cut(s) 525, 2208
Eco47I GGWCC 6 cut(s) 134, 672, 1254, 1519, 2350, 2826
Eco57I CTGAAG 3 cut(s) 1944, 1962, 3056
Eco72I CACGTG 1 cut(s) 3112
Eco88I CYCGRG 3 cut(s) 2207, 2748, 2852
EcoNI CCTNNNNNAGG 2 cut(s) 2345, 3252
EcoO109I RGGNCCY 4 cut(s) 1254, 1519, 2826, 2837
EcoRI GAATTC 1 cut(s) 2771
EcoRII CCWGG 9 cut(s) 136, 391, 514, 1034, 1595, 2197, 2725, 2839, 3281
EcoT14I CCWWGG 7 cut(s) 449, 501, 813, 1752, 2091, 2139, 2663
EcoT38I GRGCYC 3 cut(s) 86, 3055, 3169
ErhI CCWWGG 7 cut(s) 449, 501, 813, 1752, 2091, 2139, 2663
Esp3I CGTCTC 1 cut(s) 1444
FalI AAGNNNNNCTT 2 cut(s) 996, 1028
FaqI GGGAC 7 cut(s) 246, 409, 1240, 1505, 1842, 2765, 3214
FauI CCCGC 3 cut(s) 417, 2686, 3102
FbaI TGATCA 1 cut(s) 1534
FokI GGATG 6 cut(s) 1107, 1402, 1709, 2857, 2948, 3156
FriOI GRGCYC 3 cut(s) 86, 3055, 3169
GsaI CCCAGC 1 cut(s) 2662
GsuI CTGGAG 6 cut(s) 498, 720, 1155, 1311, 1335, 2105
HapII CCGG 6 cut(s) 831, 1992, 2019, 2741, 2749, 3272
HgaI GACGC 3 cut(s) 1461, 1626, 2778
Hin1I GRCGYC 1 cut(s) 1618
HincII GTYRAC 2 cut(s) 2538, 2793
HindII GTYRAC 2 cut(s) 2538, 2793
HindIII AAGCTT 1 cut(s) 272
HpaI GTTAAC 1 cut(s) 2538
HpaII CCGG 6 cut(s) 831, 1992, 2019, 2741, 2749, 3272
HphI GGTGA 7 cut(s) 845, 998, 1490, 1788, 2006, 2033, 2183
Hpy166II GTNNAC 5 cut(s) 200, 266, 2538, 2793, 3025
Hpy8I GTNNAC 5 cut(s) 200, 266, 2538, 2793, 3025
Hpy99I CGWCG 1 cut(s) 1620
HpyCH4III ACNGT 6 cut(s) 27, 1770, 1794, 1976, 2054, 2811
HpyCH4IV ACGT 4 cut(s) 1333, 1891, 2478, 3111
HpyF10VI GCNNNNNNNGC 9 cut(s) 28, 421, 470, 704, 872, 3010, 3043, 3085, 3094
HpySE526I ACGT 4 cut(s) 1333, 1891, 2478, 3111
Hsp92I GRCGYC 1 cut(s) 1618
Ksp22I TGATCA 1 cut(s) 1534
KspAI GTTAAC 1 cut(s) 2538
Kzo9I GATC 9 cut(s) 140, 329, 578, 1105, 1276, 1534, 1711, 2211, 2460
LguI GCTCTTC 1 cut(s) 1398
LmnI GCTCC 3 cut(s) 517, 1372, 3301
Lsp1109I GCAGC 9 cut(s) 482, 682, 685, 733, 2986, 3033, 3088, 3091, 3160
LweI GCATC 9 cut(s) 171, 402, 615, 886, 1894, 2224, 2623, 2936, 3125
MaeII ACGT 4 cut(s) 1333, 1891, 2478, 3111
MaeIII GTNAC 7 cut(s) 1794, 1970, 1994, 2021, 2048, 2444, 2692
MalI GATC 9 cut(s) 142, 331, 580, 1107, 1278, 1536, 1713, 2213, 2462
MboI GATC 9 cut(s) 140, 329, 578, 1105, 1276, 1534, 1711, 2211, 2460
MfeI CAATTG 2 cut(s) 434, 1722
MflI RGATCY 2 cut(s) 578, 1711
MhlI GDGCHC 4 cut(s) 86, 514, 3055, 3169
MlsI TGGCCA 2 cut(s) 506, 879
MluNI TGGCCA 2 cut(s) 506, 879
MlyI GAGTC 7 cut(s) 391, 1109, 1649, 2232, 2857, 2864, 3124
MmeI TCCRAC 1 cut(s) 3008
Mox20I TGGCCA 2 cut(s) 506, 879
MroXI GAANNNNTTC 2 cut(s) 118, 944
MscI TGGCCA 2 cut(s) 506, 879
MslI CAYNNNNRTG 5 cut(s) 47, 227, 1476, 1511, 2703
Msp20I TGGCCA 2 cut(s) 506, 879
MspA1I CMGCKG 5 cut(s) 58, 592, 1180, 2125, 3004
MspI CCGG 6 cut(s) 831, 1992, 2019, 2741, 2749, 3272
MunI CAATTG 2 cut(s) 434, 1722
Mva1269I GAATGC 1 cut(s) 2638
MvaI CCWGG 9 cut(s) 138, 393, 516, 1036, 1597, 2199, 2727, 2841, 3283
MwoI GCNNNNNNNGC 9 cut(s) 28, 421, 470, 704, 872, 3010, 3043, 3085, 3094
NciI CCSGG 3 cut(s) 2749, 2750, 3273
NcoI CCATGG 2 cut(s) 449, 501
NdeII GATC 9 cut(s) 140, 329, 578, 1105, 1276, 1534, 1711, 2211, 2460
NlaIV GGNNCC 9 cut(s) 63, 310, 366, 375, 537, 1256, 1521, 2116, 2838
NmuCI GTSAC 6 cut(s) 1794, 1970, 1994, 2021, 2048, 2444
NspI RCATGY 3 cut(s) 226, 2452, 2573
NspV TTCGAA 2 cut(s) 1367, 2630
OliI CACNNNNGTG 1 cut(s) 1476
PaeR7I CTCGAG 1 cut(s) 2207
PagI TCATGA 1 cut(s) 2617
PaqCI CACCTGC 1 cut(s) 475
PasI CCCWGGG 1 cut(s) 392
PceI AGGCCT 1 cut(s) 2144
PciSI GCTCTTC 1 cut(s) 1398
PcsI WCGNNNNNNNCGW 1 cut(s) 2350
PctI GAATGC 1 cut(s) 2638
PdmI GAANNNNTTC 2 cut(s) 118, 944
PflMI CCANNNNNTGG 1 cut(s) 3185
PfoI TCCNGGA 2 cut(s) 136, 2725
PleI GAGTC 7 cut(s) 391, 1108, 1648, 2231, 2857, 2863, 3124
PmaCI CACGTG 1 cut(s) 3112
PmlI CACGTG 1 cut(s) 3112
PpsI GAGTC 7 cut(s) 391, 1108, 1648, 2231, 2857, 2863, 3124
Ppu21I YACGTR 1 cut(s) 3112
PpuMI RGGWCCY 3 cut(s) 1254, 1519, 2826
Psp1406I AACGTT 1 cut(s) 1333
Psp5II RGGWCCY 3 cut(s) 1254, 1519, 2826
Psp6I CCWGG 9 cut(s) 136, 391, 514, 1034, 1595, 2197, 2725, 2839, 3281
PspCI CACGTG 1 cut(s) 3112
PspFI CCCAGC 1 cut(s) 2658
PspGI CCWGG 9 cut(s) 136, 391, 514, 1034, 1595, 2197, 2725, 2839, 3281
PspN4I GGNNCC 9 cut(s) 63, 310, 366, 375, 537, 1256, 1521, 2116, 2838
PspPPI RGGWCCY 3 cut(s) 1254, 1519, 2826
PstI CTGCAG 2 cut(s) 472, 1354
PstNI CAGNNNCTG 3 cut(s) 154, 1826, 2327
PsuI RGATCY 2 cut(s) 578, 1711
PvuII CAGCTG 3 cut(s) 58, 1180, 2125
RsaI GTAC 3 cut(s) 1041, 2849, 2999
RsaNI GTAC 3 cut(s) 1040, 2848, 2998
RseI CAYNNNNRTG 5 cut(s) 47, 227, 1476, 1511, 2703
SapI GCTCTTC 1 cut(s) 1398
Sau3AI GATC 9 cut(s) 140, 329, 578, 1105, 1276, 1534, 1711, 2211, 2460
SchI GAGTC 7 cut(s) 391, 1109, 1649, 2232, 2857, 2864, 3124
SduI GDGCHC 4 cut(s) 86, 514, 3055, 3169
SfaNI GCATC 9 cut(s) 171, 402, 615, 886, 1894, 2224, 2623, 2936, 3125
SfcI CTRYAG 4 cut(s) 468, 1350, 2590, 2874
Sfr274I CTCGAG 1 cut(s) 2207
SfuI TTCGAA 2 cut(s) 1367, 2630
SinI GGWCC 6 cut(s) 134, 672, 1254, 1519, 2350, 2826
SlaI CTCGAG 1 cut(s) 2207
SmaI CCCGGG 1 cut(s) 2750
SmiMI CAYNNNNRTG 5 cut(s) 47, 227, 1476, 1511, 2703
SmlI CTYRAG 2 cut(s) 213, 2207
SmoI CTYRAG 2 cut(s) 213, 2207
SpeI ACTAGT 2 cut(s) 905, 3203
SseBI AGGCCT 1 cut(s) 2144
StuI AGGCCT 1 cut(s) 2144
StyI CCWWGG 7 cut(s) 449, 501, 813, 1752, 2091, 2139, 2663
TaaI ACNGT 6 cut(s) 27, 1770, 1794, 1976, 2054, 2811
TaiI ACGT 4 cut(s) 1336, 1894, 2481, 3114
TaqI TCGA 6 cut(s) 1367, 1615, 2135, 2208, 2232, 2630
TauI GCSGC 3 cut(s) 22, 3007, 3192
TscAI CASTG 6 cut(s) 514, 1975, 1981, 2053, 2493, 3167
TseFI GTSAC 6 cut(s) 1794, 1970, 1994, 2021, 2048, 2444
TseI GCWGC 9 cut(s) 470, 695, 698, 721, 2974, 3046, 3076, 3079, 3148
Tsp45I GTSAC 6 cut(s) 1794, 1970, 1994, 2021, 2048, 2444
TspGWI ACGGA 2 cut(s) 1576, 2787
TspMI CCCGGG 1 cut(s) 2748
TspRI CASTG 6 cut(s) 514, 1975, 1981, 2053, 2493, 3167
Van91I CCANNNNNTGG 1 cut(s) 3185
VpaK11BI GGWCC 6 cut(s) 134, 672, 1254, 1519, 2350, 2826
XagI CCTNNNNNAGG 2 cut(s) 2345, 3252
XapI RAATTY 5 cut(s) 797, 1077, 2246, 2626, 2771
XceI RCATGY 3 cut(s) 226, 2452, 2573
XhoI CTCGAG 1 cut(s) 2207
XmaI CCCGGG 1 cut(s) 2748
XmaJI CCTAGG 1 cut(s) 2663
XmnI GAANNNNTTC 2 cut(s) 118, 944
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.