AT3G30210
MYB Family

atmyb121, myb121 myb121 (myb domain protein 121)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015861
Physical Location & Seq
Forward (+)
11838363 .. 11840502
2140 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G30210.1

Sequence Viewer

Length: 831 bp
ATGCTTGATTGGGGAGTTCAAGGTCATCATCAAAAGCATGATCATGATATTTATCAACAACAACATCAACAACAAGGATGTAGGAAGGGACCATGGACACTTGAAGAAGACAAGCTTCTCGCAGAGTATGTTACTTCGCATGGTGAAGGAAGATGGAGCACTGTAGCTAAGTGTGCAGGGTTGAATAGAAGTGGTAAAAGCTGTAGACTAAGGTGGGTGAACTACTTGAGGCCAGGGCTTAAGAGAGGACAAATCACTCCTCAAGAAGAAGGAATCATCCTTGAACTTCATTCCCTTTGGGGTAACAAGTGGTCTACAATCGCAAGATATTTACCAGGACGAACCGATAATGAAATAAAAAACTACTGGAGAACACATTACAAGAAAAACCAAAAATCTTCTTCGAAGCAAGACAAAGTAAAAAAATCTCTATCCCGGAAACAACAACAAGTGGATCTTAAACCACAACCACAAGCACAATCTGAGAATCATCAGTCTCAGCTAGTGTCCCAAGATCACATGAATATCGACAACGATCATAACATAGCTTCATCCTTGTATTACCCGACAAGTGTCTTCGATGACAAATTATATATGCCTCAAAGTGTAGCAACAACCTCATCCGACCACTCTATGATCGATGAAGGTCACTTGTGGGGCAGCTTGTGGAATCTAGACGAGGATGATCCGCATAGCTTTGGTGGTGGCTCAGGACAGGGAACAGCTGCGGATATTGATGAGAAGTTTCCAGACAGCGGAATTGAGGCCCCGTCGTGTGGCTCAGGGGATTATAGTTATACTGGAGTTTACATGGGAGGCTATATTTTTTGA

Protein Analysis

276

Amino Acids

31.37

Weight (kDa)

6.38

Isoelectric Point (pI)

58.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 29 - 76 5.9e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 32 - 90 5.2e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 82 - 126 6.3e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 86 - 132 1.5e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015861)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30210
fragaria_vesca FvH4_6g46440
malus_domestica MD09G1073600.v1.1 MD17G1065100.v1.1
prunus_persica Prupe.3G249600_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0164981
rosa_laevigata RLG00000021503
rosa_roxburghii Rroxscaffold_2G00086140
rosa_rugosa Rorug02G0511900 Rorug02G0512000
rosa_samantha Rh2AG580100 Rh2BG591200 Rh2CG561700 Rh2DG601500
rosa_wichuraiana Rw2G048150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 205, 314
AciI CCGC 3 cut(s) 689, 728, 756
AclWI GGATC 2 cut(s) 462, 680
AfiI CCNNNNNNNGG 2 cut(s) 755, 776
AflII CTTAAG 1 cut(s) 239
AgsI TTSAA 4 cut(s) 20, 104, 184, 284
AjnI CCWGG 2 cut(s) 232, 334
AluBI AGCT 8 cut(s) 115, 167, 201, 502, 548, 663, 696, 725
AluI AGCT 8 cut(s) 115, 167, 201, 502, 548, 663, 696, 725
Alw21I GWGCWC 1 cut(s) 161
Alw26I GTCTC 1 cut(s) 501
AlwI GGATC 2 cut(s) 462, 680
AoxI GGCC 2 cut(s) 230, 765
ApeKI GCWGC 2 cut(s) 660, 725
AspS9I GGNCC 2 cut(s) 89, 766
AsuC2I CCSGG 1 cut(s) 436
AsuHPI GGTGA 2 cut(s) 155, 229
AsuII TTCGAA 1 cut(s) 404
AvaII GGWCC 1 cut(s) 89
BbsI GAAGAC 2 cut(s) 114, 568
Bbv12I GWGCWC 1 cut(s) 161
BbvI GCAGC 2 cut(s) 672, 712
BccI CCATC 1 cut(s) 147
BciT130I CCWGG 2 cut(s) 234, 336
BclI TGATCA 1 cut(s) 40
BcnI CCSGG 1 cut(s) 436
BcoDI GTCTC 1 cut(s) 501
BfaI CTAG 2 cut(s) 503, 674
BfmI CTRYAG 2 cut(s) 162, 202
BfrI CTTAAG 1 cut(s) 239
BisI GCNGC 2 cut(s) 661, 726
BlsI GCNGC 2 cut(s) 662, 727
Bme1390I CCNGG 3 cut(s) 234, 336, 436
Bme18I GGWCC 1 cut(s) 89
BmgT120I GGNCC 2 cut(s) 89, 766
BmiI GGNNCC 2 cut(s) 90, 768
BmrFI CCNGG 3 cut(s) 234, 336, 436
BoxI GACNNNNGTC 1 cut(s) 572
BpiI GAAGAC 2 cut(s) 114, 568
BpmI CTGGAG 2 cut(s) 388, 822
Bpu10I CCTNAGC 2 cut(s) 709, 781
Bpu14I TTCGAA 1 cut(s) 404
BpuEI CTTGAG 2 cut(s) 246, 247
BpuMI CCSGG 1 cut(s) 436
Bsa29I ATCGAT 1 cut(s) 639
BsaBI GATNNNNATC 1 cut(s) 51
BsaJI CCNNGG 2 cut(s) 92, 233
Bsc4I CCNNNNNNNGG 2 cut(s) 755, 776
Bse1I ACTGG 2 cut(s) 371, 805
Bse8I GATNNNNATC 1 cut(s) 51
BseBI CCWGG 2 cut(s) 234, 336
BseCI ATCGAT 1 cut(s) 639
BseDI CCNNGG 2 cut(s) 92, 233
BseGI GGATG 5 cut(s) 83, 276, 551, 620, 688
BseJI GATNNNNATC 1 cut(s) 51
BseLI CCNNNNNNNGG 2 cut(s) 755, 776
BseMII CTCAG 4 cut(s) 474, 512, 723, 795
BseNI ACTGG 2 cut(s) 371, 805
BseRI GAGGAG 1 cut(s) 249
BseXI GCAGC 2 cut(s) 672, 712
BsgI GTGCAG 1 cut(s) 195
BshFI GGCC 2 cut(s) 232, 767
BshVI ATCGAT 1 cut(s) 639
BsiHKAI GWGCWC 1 cut(s) 161
BsiSI CCGG 1 cut(s) 436
BslFI GGGAC 2 cut(s) 102, 493
BslI CCNNNNNNNGG 2 cut(s) 755, 776
BsmAI GTCTC 1 cut(s) 501
BsmFI GGGAC 2 cut(s) 102, 493
BsnI GGCC 2 cut(s) 232, 767
Bsp119I TTCGAA 1 cut(s) 404
Bsp1286I GDGCHC 1 cut(s) 161
Bsp143I GATC 6 cut(s) 40, 454, 514, 535, 636, 685
Bsp19I CCATGG 1 cut(s) 92
BspACI CCGC 3 cut(s) 689, 728, 756
BspANI GGCC 2 cut(s) 232, 767
BspCNI CTCAG 4 cut(s) 475, 511, 722, 794
BspDI ATCGAT 1 cut(s) 639
BspHI TCATGA 1 cut(s) 43
BspLI GGNNCC 2 cut(s) 90, 768
BspPI GGATC 2 cut(s) 462, 680
BspT104I TTCGAA 1 cut(s) 404
BspTI CTTAAG 1 cut(s) 239
BsrI ACTGG 2 cut(s) 371, 805
BssECI CCNNGG 2 cut(s) 92, 233
BssMI GATC 6 cut(s) 40, 454, 514, 535, 636, 685
BssT1I CCWWGG 1 cut(s) 92
Bst2UI CCWGG 2 cut(s) 234, 336
Bst4CI ACNGT 1 cut(s) 163
BstAFI CTTAAG 1 cut(s) 239
BstBI TTCGAA 1 cut(s) 404
BstDEI CTNAG 6 cut(s) 168, 209, 483, 498, 709, 781
BstDSI CCRYGG 1 cut(s) 92
BstF5I GGATG 5 cut(s) 83, 276, 551, 620, 688
BstKTI GATC 6 cut(s) 43, 457, 517, 538, 639, 688
BstMAI GTCTC 1 cut(s) 501
BstMBI GATC 6 cut(s) 40, 454, 514, 535, 636, 685
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstNI CCWGG 2 cut(s) 234, 336
BstPAI GACNNNNGTC 1 cut(s) 572
BstSCI CCNGG 3 cut(s) 232, 334, 434
BstSFI CTRYAG 2 cut(s) 162, 202
BstV1I GCAGC 2 cut(s) 672, 712
BstV2I GAAGAC 2 cut(s) 114, 568
BstX2I RGATCY 1 cut(s) 454
BstYI RGATCY 1 cut(s) 454
Bsu15I ATCGAT 1 cut(s) 639
BsuRI GGCC 2 cut(s) 232, 767
BsuTUI ATCGAT 1 cut(s) 639
BtgI CCRYGG 1 cut(s) 92
BtsCI GGATG 5 cut(s) 83, 276, 551, 620, 688
BtsIMutI CAGTG 1 cut(s) 159
CciI TCATGA 1 cut(s) 43
Cfr13I GGNCC 2 cut(s) 89, 766
ClaI ATCGAT 1 cut(s) 639
CviAII CATG 6 cut(s) 38, 44, 93, 140, 520, 811
DdeI CTNAG 6 cut(s) 168, 209, 483, 498, 709, 781
DpnI GATC 6 cut(s) 42, 456, 516, 537, 638, 687
DpnII GATC 6 cut(s) 40, 454, 514, 535, 636, 685
Eco130I CCWWGG 1 cut(s) 92
Eco47I GGWCC 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 766
EcoRII CCWGG 2 cut(s) 232, 334
EcoT14I CCWWGG 1 cut(s) 92
ErhI CCWWGG 1 cut(s) 92
FaeI CATG 6 cut(s) 41, 47, 96, 143, 523, 814
FalI AAGNNNNNCTT 4 cut(s) 99, 131, 441, 473
FaqI GGGAC 2 cut(s) 102, 493
FatI CATG 6 cut(s) 37, 43, 92, 139, 519, 810
FbaI TGATCA 1 cut(s) 40
FblI GTMKAC 2 cut(s) 205, 314
Fnu4HI GCNGC 2 cut(s) 661, 726
FokI GGATG 5 cut(s) 90, 263, 538, 607, 695
Fsp4HI GCNGC 2 cut(s) 661, 726
FspBI CTAG 2 cut(s) 503, 674
GluI GCNGC 2 cut(s) 661, 726
GsuI CTGGAG 2 cut(s) 388, 822
HaeIII GGCC 2 cut(s) 232, 767
HapII CCGG 1 cut(s) 436
Hin1II CATG 6 cut(s) 41, 47, 96, 143, 523, 814
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 3 cut(s) 273, 487, 670
HpaII CCGG 1 cut(s) 436
HphI GGTGA 2 cut(s) 155, 229
Hpy166II GTNNAC 4 cut(s) 206, 220, 315, 808
Hpy188I TCNGA 2 cut(s) 484, 625
Hpy188III TCNNGA 5 cut(s) 44, 263, 674, 711, 749
Hpy8I GTNNAC 4 cut(s) 206, 220, 315, 808
Hpy99I CGWCG 1 cut(s) 775
HpyAV CCTTC 4 cut(s) 79, 140, 263, 638
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4V TGCA 1 cut(s) 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpyF3I CTNAG 6 cut(s) 168, 209, 483, 498, 709, 781
Hsp92II CATG 6 cut(s) 41, 47, 96, 143, 523, 814
Ksp22I TGATCA 1 cut(s) 40
Kzo9I GATC 6 cut(s) 40, 454, 514, 535, 636, 685
LmnI GCTCC 1 cut(s) 156
Lsp1109I GCAGC 2 cut(s) 672, 712
MaeI CTAG 2 cut(s) 503, 674
MaeIII GTNAC 3 cut(s) 130, 302, 647
MalI GATC 6 cut(s) 42, 456, 516, 537, 638, 687
MboI GATC 6 cut(s) 40, 454, 514, 535, 636, 685
MboII GAAGA 7 cut(s) 116, 119, 162, 278, 390, 393, 568
MflI RGATCY 1 cut(s) 454
MhlI GDGCHC 1 cut(s) 161
MluCI AATT 2 cut(s) 587, 759
MmeI TCCRAC 1 cut(s) 648
MnlI CCTC 8 cut(s) 222, 239, 270, 609, 628, 673, 757, 809
MseI TTAA 2 cut(s) 240, 459
MslI CAYNNNNRTG 1 cut(s) 42
MspA1I CMGCKG 2 cut(s) 725, 756
MspCI CTTAAG 1 cut(s) 239
MspI CCGG 1 cut(s) 436
MspR9I CCNGG 3 cut(s) 234, 336, 436
MvaI CCWGG 2 cut(s) 234, 336
MwoI GCNNNNNNNGC 1 cut(s) 173
NciI CCSGG 1 cut(s) 436
NcoI CCATGG 1 cut(s) 92
NdeII GATC 6 cut(s) 40, 454, 514, 535, 636, 685
NlaIII CATG 6 cut(s) 41, 47, 96, 143, 523, 814
NlaIV GGNNCC 2 cut(s) 90, 768
NmuCI GTSAC 1 cut(s) 647
NspV TTCGAA 1 cut(s) 404
PagI TCATGA 1 cut(s) 43
PfeI GAWTC 3 cut(s) 273, 487, 670
PfoI TCCNGGA 1 cut(s) 434
PkrI GCNGC 2 cut(s) 662, 727
PshAI GACNNNNGTC 1 cut(s) 572
Psp6I CCWGG 2 cut(s) 232, 334
PspGI CCWGG 2 cut(s) 232, 334
PspN4I GGNNCC 2 cut(s) 90, 768
PspPI GGNCC 2 cut(s) 89, 766
PsuI RGATCY 1 cut(s) 454
PvuII CAGCTG 1 cut(s) 725
RseI CAYNNNNRTG 1 cut(s) 42
SaqAI TTAA 2 cut(s) 240, 459
SatI GCNGC 2 cut(s) 661, 726
Sau3AI GATC 6 cut(s) 40, 454, 514, 535, 636, 685
Sau96I GGNCC 2 cut(s) 89, 766
ScrFI CCNGG 3 cut(s) 234, 336, 436
SduI GDGCHC 1 cut(s) 161
SfcI CTRYAG 2 cut(s) 162, 202
SfuI TTCGAA 1 cut(s) 404
SinI GGWCC 1 cut(s) 89
SmiMI CAYNNNNRTG 1 cut(s) 42
SmlI CTYRAG 3 cut(s) 226, 239, 261
SmoI CTYRAG 3 cut(s) 226, 239, 261
Sse9I AATT 2 cut(s) 587, 759
SsiI CCGC 3 cut(s) 689, 728, 756
SspMI CTAG 2 cut(s) 503, 674
StyD4I CCNGG 3 cut(s) 232, 334, 434
StyI CCWWGG 1 cut(s) 92
TaaI ACNGT 1 cut(s) 163
TaqI TCGA 4 cut(s) 404, 528, 579, 639
TasI AATT 2 cut(s) 587, 759
TfiI GAWTC 3 cut(s) 273, 487, 670
Tru1I TTAA 2 cut(s) 240, 459
Tru9I TTAA 2 cut(s) 240, 459
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 1 cut(s) 647
TseI GCWGC 2 cut(s) 660, 725
Tsp45I GTSAC 1 cut(s) 647
TspDTI ATGAA 5 cut(s) 278, 366, 536, 540, 657
TspRI CASTG 1 cut(s) 166
Vha464I CTTAAG 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 89
XbaI TCTAGA 1 cut(s) 673
XmiI GTMKAC 2 cut(s) 205, 314
XspI CTAG 2 cut(s) 503, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.