Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0015861

Physical Location & Seq

Genomic Coordinates Reverse (-)

75950912 .. 75952688

Gene Structure 1777 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021503

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGAGCAGTATCCGAGTGATGGATAAATTAACAGAGAGAGAGATACGCGAGGCATCGATTGAGAATTTACAAGTGAAATTGAGGAACATGGCAAGTGTGCTGGTGGGATGGGGCGGTGTTGCGGGAAAAGGGTGGAGGAAAGGTCCTTGGACTCATGAAGAGGATAAGCTGCTCAGTGAGCATGTCAATTTGCATGGAGAGGGAAGATGGAGTTCGGTTGCTAGGTGCACAGGGTTGAACAGGAATGGGAAAAGTTGCAGACTTAGATGGGTGAATTATCTTAGGCCTGGACTGAAGAGAGGCCAGTTGACACCTCAGGAGGAAGGCATTATTATTGAATTGCATGCTTTATGGGGTAACAAGTGGTCTACAATTGCTAGATACTTGCCTGGGAGAACAGACAATGAGATTAAGAATTACTGGAGAACTCATTTCAAAAAGAAAGAGAAGTGCACCGAGAAGCAGCAAAAACGAAAAGCTCAAATCCTCAAAGAGAAGCAACAACAACAACAACAAGCTATAAAGGATGATCAAGAAAACAAGAAAATAAAATCAGCCAGTACTAGTACTGCACCACAGGGACATAGTGAAGCCTTGGCCAGCAGCAGCGAATTACGAAATAATAATATGATCACTCATGATGAGCTGCAGCAGCTGGCACAGCCAACTCAAGAGATGAATGTTGTTTTTACATGCCCGAATATGGAGGAGGTTCAGTGCTTACCTGCACTAGTGTCGATGAACCAATTAGGCGGTACTACTAGTGCTGTTGAATCTACTATATGGTCATCGGAAAACACTGCCATGATTAACATTGAAGCAGAAGACGATCAAGGGTTTTGGGGACAACTCTGGAACCTAGACGATGATCATGGTCATGTACAAGCTAACCGCGTGGGACATCACACCAGTTATAGCAATAGTGAGTACCGGAACAGTTTAGCCTTGCAGCAGAATCAAGCAATTACAGCTACATCTTCTGGAGCCATACACAATGAAGCTACTAGGGCTTACAATTTTTCTTGGGGAGAGGATATTCGTTCCGATAAGTACTTCTATAGCGGATCAGGCTGCACACATTCTAAGGAGGGCTATACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

367

Amino Acids

41.53

Weight (kDa)

8.13

Isoelectric Point (pI)

50.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	47 - 94	9.8e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	50 - 108	6.1e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	100 - 144	4.9e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	104 - 155	1.7e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30210
fragaria_vesca	FvH4_6g46440
malus_domestica	MD09G1073600.v1.1 MD17G1065100.v1.1
prunus_persica	Prupe.3G249600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0164981
rosa_laevigata	RLG00000021503
rosa_roxburghii	Rroxscaffold_2G00086140
rosa_rugosa	Rorug02G0511900 Rorug02G0512000
rosa_samantha	Rh2AG580100 Rh2BG591200 Rh2CG561700 Rh2DG601500
rosa_wichuraiana	Rw2G048150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	733
AccI	GTMKAC	1 cut(s)	368
AccII	CGCG	2 cut(s)	48, 894
AciI	CCGC	5 cut(s)	114, 122, 753, 892, 1062
AclWI	GGATC	1 cut(s)	1072
AcoI	YGGCCR	1 cut(s)	597
AcsI	RAATTY	1 cut(s)	64
AcuI	CTGAAG	1 cut(s)	314
AfaI	GTAC	6 cut(s)	562, 568, 757, 882, 929, 1052
AfiI	CCNNNNNNNGG	2 cut(s)	19, 703
AgsI	TTSAA	5 cut(s)	238, 338, 436, 773, 818
AhlI	ACTAGT	3 cut(s)	563, 730, 761
AjnI	CCWGG	2 cut(s)	286, 388
AluBI	AGCT	8 cut(s)	169, 479, 518, 646, 655, 887, 971, 1001
AluI	AGCT	8 cut(s)	169, 479, 518, 646, 655, 887, 971, 1001
Alw21I	GWGCWC	2 cut(s)	230, 455
Alw44I	GTGCAC	2 cut(s)	226, 451
AlwI	GGATC	1 cut(s)	1072
AlwNI	CAGNNNCTG	1 cut(s)	655
AoxI	GGCC	3 cut(s)	284, 301, 597
ApaLI	GTGCAC	2 cut(s)	226, 451
ApeKI	GCWGC	9 cut(s)	169, 463, 603, 606, 646, 649, 652, 949, 1071
ApoI	RAATTY	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	143
AxyI	CCTNAGG	1 cut(s)	315
BaeGI	GKGCMC	2 cut(s)	230, 455
BalI	TGGCCA	1 cut(s)	599
BbsI	GAAGAC	1 cut(s)	831
Bbv12I	GWGCWC	2 cut(s)	230, 455
BbvI	GCAGC	9 cut(s)	156, 475, 615, 618, 633, 661, 664, 961, 1058
BccI	CCATC	4 cut(s)	13, 102, 201, 261
BcgI	CGANNNNNNTGC	2 cut(s)	717, 751
BciT130I	CCWGG	2 cut(s)	288, 390
BciVI	GTATCC	1 cut(s)	20
BclI	TGATCA	3 cut(s)	529, 630, 868
BcuI	ACTAGT	3 cut(s)	563, 730, 761
BfaI	CTAG	8 cut(s)	222, 378, 564, 731, 762, 860, 1005, 1099
BfmI	CTRYAG	2 cut(s)	647, 1057
BfuAI	ACCTGC	1 cut(s)	733
BfuI	GTATCC	1 cut(s)	20
BisI	GCNGC	9 cut(s)	170, 464, 604, 607, 647, 650, 653, 950, 1072
BlsI	GCNGC	9 cut(s)	171, 465, 605, 608, 648, 651, 654, 951, 1073
BmcAI	AGTACT	3 cut(s)	562, 568, 1052
Bme1390I	CCNGG	2 cut(s)	288, 390
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	143
BmiI	GGNNCC	2 cut(s)	857, 985
BmrFI	CCNGG	2 cut(s)	288, 390
BmsI	GCATC	1 cut(s)	62
BpiI	GAAGAC	1 cut(s)	831
BpmI	CTGGAG	2 cut(s)	442, 1002
BpuEI	CTTGAG	1 cut(s)	654
Bsa29I	ATCGAT	1 cut(s)	56
BsaJI	CCNNGG	3 cut(s)	146, 389, 594
BsaWI	WCCGGW	1 cut(s)	930
BsaXI	ACNNNNNCTCC	4 cut(s)	127, 157, 701, 731
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 703
Bse1I	ACTGG	4 cut(s)	304, 425, 558, 909
Bse21I	CCTNAGG	1 cut(s)	315
BseBI	CCWGG	2 cut(s)	288, 390
BseCI	ATCGAT	1 cut(s)	56
BseDI	CCNNGG	3 cut(s)	146, 389, 594
BseGI	GGATG	2 cut(s)	113, 532
BseLI	CCNNNNNNNGG	2 cut(s)	19, 703
BseMII	CTCAG	2 cut(s)	187, 329
BseNI	ACTGG	4 cut(s)	304, 425, 558, 909
BseRI	GAGGAG	1 cut(s)	722
BseSI	GKGCMC	2 cut(s)	230, 455
BseXI	GCAGC	9 cut(s)	156, 475, 615, 618, 633, 661, 664, 961, 1058
BsgI	GTGCAG	3 cut(s)	555, 711, 1057
Bsh1236I	CGCG	2 cut(s)	48, 894
BshFI	GGCC	3 cut(s)	286, 303, 599
BshVI	ATCGAT	1 cut(s)	56
BsiHKAI	GWGCWC	2 cut(s)	230, 455
BsiSI	CCGG	1 cut(s)	931
BslFI	GGGAC	3 cut(s)	594, 858, 912
BslI	CCNNNNNNNGG	2 cut(s)	19, 703
BsmFI	GGGAC	3 cut(s)	594, 858, 912
BsnI	GGCC	3 cut(s)	286, 303, 599
Bsp1286I	GDGCHC	2 cut(s)	230, 455
Bsp1407I	TGTACA	1 cut(s)	880
Bsp143I	GATC	5 cut(s)	529, 630, 829, 868, 1064
BspACI	CCGC	5 cut(s)	114, 122, 753, 892, 1062
BspANI	GGCC	3 cut(s)	286, 303, 599
BspCNI	CTCAG	2 cut(s)	186, 328
BspDI	ATCGAT	1 cut(s)	56
BspFNI	CGCG	2 cut(s)	48, 894
BspHI	TCATGA	2 cut(s)	154, 637
BspLI	GGNNCC	2 cut(s)	857, 985
BspMAI	CTGCAG	1 cut(s)	651
BspMI	ACCTGC	1 cut(s)	733
BspPI	GGATC	1 cut(s)	1072
BsrGI	TGTACA	1 cut(s)	880
BsrI	ACTGG	4 cut(s)	304, 425, 558, 909
BssECI	CCNNGG	3 cut(s)	146, 389, 594
BssMI	GATC	5 cut(s)	529, 630, 829, 868, 1064
BssT1I	CCWWGG	2 cut(s)	146, 594
Bst2UI	CCWGG	2 cut(s)	288, 390
Bst4CI	ACNGT	1 cut(s)	938
Bst6I	CTCTTC	2 cut(s)	153, 290
BstAUI	TGTACA	1 cut(s)	880
BstC8I	GCNNGC	3 cut(s)	345, 601, 657
BstDEI	CTNAG	5 cut(s)	173, 263, 281, 315, 1083
BstF5I	GGATG	2 cut(s)	113, 532
BstFNI	CGCG	2 cut(s)	48, 894
BstKTI	GATC	5 cut(s)	532, 633, 832, 871, 1067
BstMBI	GATC	5 cut(s)	529, 630, 829, 868, 1064
BstMWI	GCNNNNNNNGC	6 cut(s)	178, 652, 661, 968, 1007, 1068
BstNI	CCWGG	2 cut(s)	288, 390
BstNSI	RCATGY	3 cut(s)	185, 347, 696
BstSCI	CCNGG	2 cut(s)	286, 388
BstSFI	CTRYAG	2 cut(s)	647, 1057
BstSLI	GKGCMC	2 cut(s)	230, 455
BstUI	CGCG	2 cut(s)	48, 894
BstV1I	GCAGC	9 cut(s)	156, 475, 615, 618, 633, 661, 664, 961, 1058
BstV2I	GAAGAC	1 cut(s)	831
Bsu15I	ATCGAT	1 cut(s)	56
Bsu36I	CCTNAGG	1 cut(s)	315
BsuI	GTATCC	1 cut(s)	20
BsuRI	GGCC	3 cut(s)	286, 303, 599
BsuTUI	ATCGAT	1 cut(s)	56
BtsCI	GGATG	2 cut(s)	113, 532
BtsI	GCAGTG	1 cut(s)	798
BtsIMutI	CAGTG	3 cut(s)	181, 722, 798
BveI	ACCTGC	1 cut(s)	733
Cac8I	GCNNGC	3 cut(s)	345, 601, 657
CaiI	CAGNNNCTG	1 cut(s)	655
CciI	TCATGA	2 cut(s)	154, 637
Cfr13I	GGNCC	1 cut(s)	143
ClaI	ATCGAT	1 cut(s)	56
Csp6I	GTAC	6 cut(s)	561, 567, 756, 881, 928, 1051
CviQI	GTAC	6 cut(s)	561, 567, 756, 881, 928, 1051
DdeI	CTNAG	5 cut(s)	173, 263, 281, 315, 1083
DpnI	GATC	5 cut(s)	531, 632, 831, 870, 1066
DpnII	GATC	5 cut(s)	529, 630, 829, 868, 1064
EaeI	YGGCCR	1 cut(s)	597
Eam1104I	CTCTTC	2 cut(s)	153, 290
EarI	CTCTTC	2 cut(s)	153, 290
Eco130I	CCWWGG	2 cut(s)	146, 594
Eco147I	AGGCCT	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	314
Eco81I	CCTNAGG	1 cut(s)	315
EcoO109I	RGGNCCY	1 cut(s)	143
EcoRII	CCWGG	2 cut(s)	286, 388
EcoT14I	CCWWGG	2 cut(s)	146, 594
ErhI	CCWWGG	2 cut(s)	146, 594
FaqI	GGGAC	3 cut(s)	594, 858, 912
FauI	CCCGC	1 cut(s)	115
FbaI	TGATCA	3 cut(s)	529, 630, 868
FblI	GTMKAC	1 cut(s)	368
Fnu4HI	GCNGC	9 cut(s)	170, 464, 604, 607, 647, 650, 653, 950, 1072
FokI	GGATG	2 cut(s)	120, 539
Fsp4HI	GCNGC	9 cut(s)	170, 464, 604, 607, 647, 650, 653, 950, 1072
FspBI	CTAG	8 cut(s)	222, 378, 564, 731, 762, 860, 1005, 1099
GluI	GCNGC	9 cut(s)	170, 464, 604, 607, 647, 650, 653, 950, 1072
GsuI	CTGGAG	2 cut(s)	442, 1002
HaeIII	GGCC	3 cut(s)	286, 303, 599
HapII	CCGG	1 cut(s)	931
HincII	GTYRAC	1 cut(s)	309
HindII	GTYRAC	1 cut(s)	309
HinfI	GANTC	3 cut(s)	151, 773, 955
HpaII	CCGG	1 cut(s)	931
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	4 cut(s)	228, 309, 369, 453
Hpy188I	TCNGA	3 cut(s)	14, 793, 1045
Hpy188III	TCNNGA	7 cut(s)	155, 317, 533, 638, 671, 853, 981
Hpy8I	GTNNAC	4 cut(s)	228, 309, 369, 453
HpyAV	CCTTC	1 cut(s)	317
HpyCH4III	ACNGT	1 cut(s)	938
HpyF10VI	GCNNNNNNNGC	6 cut(s)	178, 652, 661, 968, 1007, 1068
HpyF3I	CTNAG	5 cut(s)	173, 263, 281, 315, 1083
Ksp22I	TGATCA	3 cut(s)	529, 630, 868
Kzo9I	GATC	5 cut(s)	529, 630, 829, 868, 1064
LmnI	GCTCC	1 cut(s)	983
Lsp1109I	GCAGC	9 cut(s)	156, 475, 615, 618, 633, 661, 664, 961, 1058
LweI	GCATC	1 cut(s)	62
MaeI	CTAG	8 cut(s)	222, 378, 564, 731, 762, 860, 1005, 1099
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	5 cut(s)	531, 632, 831, 870, 1066
MboI	GATC	5 cut(s)	529, 630, 829, 868, 1064
MboII	GAAGA	5 cut(s)	170, 216, 307, 836, 969
MfeI	CAATTG	1 cut(s)	372
MhlI	GDGCHC	2 cut(s)	230, 455
MlsI	TGGCCA	1 cut(s)	599
MluNI	TGGCCA	1 cut(s)	599
MlyI	GAGTC	1 cut(s)	145
Mox20I	TGGCCA	1 cut(s)	599
MscI	TGGCCA	1 cut(s)	599
MseI	TTAA	3 cut(s)	29, 411, 810
MslI	CAYNNNNRTG	2 cut(s)	803, 876
Msp20I	TGGCCA	1 cut(s)	599
MspA1I	CMGCKG	1 cut(s)	655
MspI	CCGG	1 cut(s)	931
MspR9I	CCNGG	2 cut(s)	288, 390
MunI	CAATTG	1 cut(s)	372
MvaI	CCWGG	2 cut(s)	288, 390
MvnI	CGCG	2 cut(s)	48, 894
MwoI	GCNNNNNNNGC	6 cut(s)	178, 652, 661, 968, 1007, 1068
NdeII	GATC	5 cut(s)	529, 630, 829, 868, 1064
NlaIV	GGNNCC	2 cut(s)	857, 985
NspI	RCATGY	3 cut(s)	185, 347, 696
PaeI	GCATGC	1 cut(s)	347
PagI	TCATGA	2 cut(s)	154, 637
PceI	AGGCCT	1 cut(s)	286
PfeI	GAWTC	2 cut(s)	773, 955
PkrI	GCNGC	9 cut(s)	171, 465, 605, 608, 648, 651, 654, 951, 1073
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PpuMI	RGGWCCY	1 cut(s)	143
Psp5II	RGGWCCY	1 cut(s)	143
Psp6I	CCWGG	2 cut(s)	286, 388
PspGI	CCWGG	2 cut(s)	286, 388
PspN4I	GGNNCC	2 cut(s)	857, 985
PspPI	GGNCC	1 cut(s)	143
PspPPI	RGGWCCY	1 cut(s)	143
PstI	CTGCAG	1 cut(s)	651
PstNI	CAGNNNCTG	1 cut(s)	655
PvuII	CAGCTG	1 cut(s)	655
RsaI	GTAC	6 cut(s)	562, 568, 757, 882, 929, 1052
RsaNI	GTAC	6 cut(s)	561, 567, 756, 881, 928, 1051
RseI	CAYNNNNRTG	2 cut(s)	803, 876
SaqAI	TTAA	3 cut(s)	29, 411, 810
SatI	GCNGC	9 cut(s)	170, 464, 604, 607, 647, 650, 653, 950, 1072
Sau3AI	GATC	5 cut(s)	529, 630, 829, 868, 1064
Sau96I	GGNCC	1 cut(s)	143
ScaI	AGTACT	3 cut(s)	562, 568, 1052
SchI	GAGTC	1 cut(s)	145
ScrFI	CCNGG	2 cut(s)	288, 390
SduI	GDGCHC	2 cut(s)	230, 455
SfaNI	GCATC	1 cut(s)	62
SfcI	CTRYAG	2 cut(s)	647, 1057
SinI	GGWCC	1 cut(s)	143
SmiMI	CAYNNNNRTG	2 cut(s)	803, 876
SmlI	CTYRAG	1 cut(s)	669
SmoI	CTYRAG	1 cut(s)	669
SpeI	ACTAGT	3 cut(s)	563, 730, 761
SphI	GCATGC	1 cut(s)	347
SseBI	AGGCCT	1 cut(s)	286
SsiI	CCGC	5 cut(s)	114, 122, 753, 892, 1062
SspMI	CTAG	8 cut(s)	222, 378, 564, 731, 762, 860, 1005, 1099
StuI	AGGCCT	1 cut(s)	286
StyD4I	CCNGG	2 cut(s)	286, 388
StyI	CCWWGG	2 cut(s)	146, 594
TaaI	ACNGT	1 cut(s)	938
TaqI	TCGA	2 cut(s)	56, 737
TatI	WGTACW	4 cut(s)	560, 566, 880, 1050
TfiI	GAWTC	2 cut(s)	773, 955
Tru1I	TTAA	3 cut(s)	29, 411, 810
Tru9I	TTAA	3 cut(s)	29, 411, 810
TscAI	CASTG	3 cut(s)	181, 722, 805
TseI	GCWGC	9 cut(s)	169, 463, 603, 606, 646, 649, 652, 949, 1071
TspDTI	ATGAA	4 cut(s)	171, 692, 755, 1011
TspRI	CASTG	3 cut(s)	181, 722, 805
VneI	GTGCAC	2 cut(s)	226, 451
VpaK11BI	GGWCC	1 cut(s)	143
XapI	RAATTY	1 cut(s)	64
XceI	RCATGY	3 cut(s)	185, 347, 696
XmiI	GTMKAC	1 cut(s)	368
XspI	CTAG	8 cut(s)	222, 378, 564, 731, 762, 860, 1005, 1099
ZrmI	AGTACT	3 cut(s)	562, 568, 1052

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.