Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0015861

Physical Location & Seq

Genomic Coordinates Reverse (-)

80927238 .. 80928913

Gene Structure 1676 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG580100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGAGCAGTGTCCGAGTGATAGATAAATTAACAGAAAGAGAGATACACGAGGCATCGATTGAGAATTTACAAGTGAAATTGAGGAACATGGCAAGTGTGCTGGTGGGATGGGGCGGTGTTGCGGAAAAAGGGTGGAGGAAAGGTCCTTGGACTCCTGAAGAGGATAAGCTGCTCAGTGAGCATGTCAATTTGCATGGAGAGGGAAGATGGAGTTCTGTTGCTAGGTGCACAGGGTTGAACAGGAGTGGGAAAAGTTGCAGACTTAGATGGGTGAATTATCTTAGGCCTGGACTGAAGAGAGGCCAGTTGACACCTCAGGAGGAAAGCATTATTATTGAATTGCATGCTTTATGGGGTAACAAGTGGTCTACAATTGCTAGATACTTGCCTGGGAGAACAGACAATGAGATAAAGAACTACTGGAGAACTCATTTCAAAAAGAAAGAGAAGTGCACCGAGAAACAGCAAAAACGAAAAGCTCAAATCCTCAAAGAGAAGCAACAACAACAACAAGATATAAAGGATGATCAAGAAAACAAGAAAATAAAATCAGCCAATACTAGTACTTCACCACAGGGACATAGTGAAGCCTTGACCTGCAGCAGCGAATTACGAAATAATAATATGATCACTGATGAGCTGCAGCAGCTGGCACAGCCAACTCAAGAGATGAATGTTGTTTTTACATGCCCGAATATGGAGGAGGCTCAATGCTTACCTGCACTAGTGTCGATGAACCAATTAGGCGGTACTACTAGTGCTGTTGAATCTACTATATGGTCATCGGAAAACACTGCCATGATTAACGTTGAATCAGAAGACGATCAAGGGTTTTGGGGACAACTATGGAACCTAGACGATGATCATGGTCATGTACAAGCTAACCGTGTGGAATATCACACCAGTTATAGCAATAGTGAGTGCCGGAACAGTTTAGCCTTGCAGCAGAATCAAGCAATTACAGCTACATCTTCTGGAGCCATAGCAATGAAGCTACTAGGGCTAACAATTTTTCCTGGGGAGAGGATATTCGTTCCTATAAGTACTTCTATCGCGGATCAGGCTACACATTCTAAGGAGGGCTATACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

363

Amino Acids

41.02

Weight (kDa)

6.81

Isoelectric Point (pI)

51.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	47 - 94	2.5e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	50 - 102	3.1e-10	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	100 - 144	9.4e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	104 - 155	6.3e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30210
fragaria_vesca	FvH4_6g46440
malus_domestica	MD09G1073600.v1.1 MD17G1065100.v1.1
prunus_persica	Prupe.3G249600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0164981
rosa_laevigata	RLG00000021503
rosa_roxburghii	Rroxscaffold_2G00086140
rosa_rugosa	Rorug02G0511900 Rorug02G0512000
rosa_samantha	Rh2AG580100 Rh2BG591200 Rh2CG561700 Rh2DG601500
rosa_wichuraiana	Rw2G048150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	605, 727
AccI	GTMKAC	1 cut(s)	368
AccII	CGCG	1 cut(s)	1055
AciI	CCGC	4 cut(s)	114, 122, 747, 1055
AclI	AACGTT	1 cut(s)	807
AclWI	GGATC	1 cut(s)	1065
AcsI	RAATTY	1 cut(s)	64
AcuI	CTGAAG	2 cut(s)	177, 314
AfaI	GTAC	4 cut(s)	565, 751, 876, 1045
AfiI	CCNNNNNNNGG	1 cut(s)	697
AgsI	TTSAA	5 cut(s)	238, 338, 436, 767, 812
AhlI	ACTAGT	3 cut(s)	560, 724, 755
AjnI	CCWGG	3 cut(s)	286, 388, 1015
AluBI	AGCT	7 cut(s)	169, 479, 640, 649, 881, 965, 994
AluI	AGCT	7 cut(s)	169, 479, 640, 649, 881, 965, 994
Alw21I	GWGCWC	2 cut(s)	230, 455
Alw44I	GTGCAC	2 cut(s)	226, 451
AlwI	GGATC	1 cut(s)	1065
AlwNI	CAGNNNCTG	1 cut(s)	649
AoxI	GGCC	2 cut(s)	284, 301
ApaLI	GTGCAC	2 cut(s)	226, 451
ApeKI	GCWGC	7 cut(s)	169, 600, 603, 640, 643, 646, 943
ApoI	RAATTY	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	143
AsuHPI	GGTGA	2 cut(s)	283, 561
AvaII	GGWCC	1 cut(s)	143
AxyI	CCTNAGG	1 cut(s)	315
BaeGI	GKGCMC	2 cut(s)	230, 455
BauI	CACGAG	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	825
Bbv12I	GWGCWC	2 cut(s)	230, 455
BbvI	GCAGC	7 cut(s)	156, 612, 615, 627, 655, 658, 955
BccI	CCATC	3 cut(s)	102, 201, 261
BcgI	CGANNNNNNTGC	2 cut(s)	711, 745
BciT130I	CCWGG	3 cut(s)	288, 390, 1017
BclI	TGATCA	3 cut(s)	526, 627, 862
BcuI	ACTAGT	3 cut(s)	560, 724, 755
BfaI	CTAG	8 cut(s)	222, 378, 561, 725, 756, 854, 998, 1090
BfmI	CTRYAG	2 cut(s)	598, 641
BfuAI	ACCTGC	2 cut(s)	605, 727
BisI	GCNGC	7 cut(s)	170, 601, 604, 641, 644, 647, 944
BlsI	GCNGC	7 cut(s)	171, 602, 605, 642, 645, 648, 945
BmcAI	AGTACT	2 cut(s)	565, 1045
Bme1390I	CCNGG	3 cut(s)	288, 390, 1017
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	143
BmiI	GGNNCC	2 cut(s)	851, 979
BmrFI	CCNGG	3 cut(s)	288, 390, 1017
BmsI	GCATC	1 cut(s)	62
BpiI	GAAGAC	1 cut(s)	825
BpmI	CTGGAG	2 cut(s)	442, 996
BpuEI	CTTGAG	1 cut(s)	648
Bsa29I	ATCGAT	1 cut(s)	56
BsaJI	CCNNGG	3 cut(s)	146, 389, 1016
BsaXI	ACNNNNNCTCC	2 cut(s)	127, 157
Bsc4I	CCNNNNNNNGG	1 cut(s)	697
Bse1I	ACTGG	3 cut(s)	304, 425, 903
Bse21I	CCTNAGG	1 cut(s)	315
Bse3DI	GCAATG	1 cut(s)	993
BseBI	CCWGG	3 cut(s)	288, 390, 1017
BseCI	ATCGAT	1 cut(s)	56
BseDI	CCNNGG	3 cut(s)	146, 389, 1016
BseGI	GGATG	2 cut(s)	113, 529
BseLI	CCNNNNNNNGG	1 cut(s)	697
BseMI	GCAATG	1 cut(s)	993
BseMII	CTCAG	2 cut(s)	187, 329
BseNI	ACTGG	3 cut(s)	304, 425, 903
BseRI	GAGGAG	1 cut(s)	716
BseSI	GKGCMC	2 cut(s)	230, 455
BseXI	GCAGC	7 cut(s)	156, 612, 615, 627, 655, 658, 955
BsgI	GTGCAG	1 cut(s)	705
Bsh1236I	CGCG	1 cut(s)	1055
BshFI	GGCC	2 cut(s)	286, 303
BshVI	ATCGAT	1 cut(s)	56
BsiHKAI	GWGCWC	2 cut(s)	230, 455
BsiSI	CCGG	1 cut(s)	925
BslFI	GGGAC	2 cut(s)	591, 852
BslI	CCNNNNNNNGG	1 cut(s)	697
BsmFI	GGGAC	2 cut(s)	591, 852
BsnI	GGCC	2 cut(s)	286, 303
Bsp1286I	GDGCHC	2 cut(s)	230, 455
Bsp1407I	TGTACA	1 cut(s)	874
Bsp143I	GATC	5 cut(s)	526, 627, 823, 862, 1057
BspACI	CCGC	4 cut(s)	114, 122, 747, 1055
BspANI	GGCC	2 cut(s)	286, 303
BspCNI	CTCAG	2 cut(s)	186, 328
BspDI	ATCGAT	1 cut(s)	56
BspFNI	CGCG	1 cut(s)	1055
BspLI	GGNNCC	2 cut(s)	851, 979
BspMAI	CTGCAG	2 cut(s)	602, 645
BspMI	ACCTGC	2 cut(s)	605, 727
BspPI	GGATC	1 cut(s)	1065
BsrDI	GCAATG	1 cut(s)	993
BsrGI	TGTACA	1 cut(s)	874
BsrI	ACTGG	3 cut(s)	304, 425, 903
BssECI	CCNNGG	3 cut(s)	146, 389, 1016
BssMI	GATC	5 cut(s)	526, 627, 823, 862, 1057
BssSI	CACGAG	1 cut(s)	47
BssT1I	CCWWGG	1 cut(s)	146
Bst2BI	CACGAG	1 cut(s)	47
Bst2UI	CCWGG	3 cut(s)	288, 390, 1017
Bst4CI	ACNGT	2 cut(s)	887, 932
Bst6I	CTCTTC	2 cut(s)	153, 290
BstAUI	TGTACA	1 cut(s)	874
BstC8I	GCNNGC	2 cut(s)	345, 651
BstDEI	CTNAG	5 cut(s)	173, 263, 281, 315, 1074
BstF5I	GGATG	2 cut(s)	113, 529
BstFNI	CGCG	1 cut(s)	1055
BstKTI	GATC	5 cut(s)	529, 630, 826, 865, 1060
BstMBI	GATC	5 cut(s)	526, 627, 823, 862, 1057
BstMWI	GCNNNNNNNGC	6 cut(s)	178, 646, 655, 962, 1000, 1061
BstNI	CCWGG	3 cut(s)	288, 390, 1017
BstNSI	RCATGY	3 cut(s)	185, 347, 690
BstSCI	CCNGG	3 cut(s)	286, 388, 1015
BstSFI	CTRYAG	2 cut(s)	598, 641
BstSLI	GKGCMC	2 cut(s)	230, 455
BstUI	CGCG	1 cut(s)	1055
BstV1I	GCAGC	7 cut(s)	156, 612, 615, 627, 655, 658, 955
BstV2I	GAAGAC	1 cut(s)	825
Bsu15I	ATCGAT	1 cut(s)	56
Bsu36I	CCTNAGG	1 cut(s)	315
BsuRI	GGCC	2 cut(s)	286, 303
BsuTUI	ATCGAT	1 cut(s)	56
BtsCI	GGATG	2 cut(s)	113, 529
BtsI	GCAGTG	2 cut(s)	13, 792
BtsIMutI	CAGTG	4 cut(s)	13, 181, 630, 792
BveI	ACCTGC	2 cut(s)	605, 727
Cac8I	GCNNGC	2 cut(s)	345, 651
CaiI	CAGNNNCTG	1 cut(s)	649
Cfr13I	GGNCC	1 cut(s)	143
ClaI	ATCGAT	1 cut(s)	56
Csp6I	GTAC	4 cut(s)	564, 750, 875, 1044
CviAII	CATG	8 cut(s)	88, 182, 194, 344, 687, 799, 866, 872
CviQI	GTAC	4 cut(s)	564, 750, 875, 1044
DdeI	CTNAG	5 cut(s)	173, 263, 281, 315, 1074
DpnI	GATC	5 cut(s)	528, 629, 825, 864, 1059
DpnII	GATC	5 cut(s)	526, 627, 823, 862, 1057
Eam1104I	CTCTTC	2 cut(s)	153, 290
EarI	CTCTTC	2 cut(s)	153, 290
Eco130I	CCWWGG	1 cut(s)	146
Eco147I	AGGCCT	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	143
Eco57I	CTGAAG	2 cut(s)	177, 314
Eco81I	CCTNAGG	1 cut(s)	315
EcoO109I	RGGNCCY	1 cut(s)	143
EcoRII	CCWGG	3 cut(s)	286, 388, 1015
EcoT14I	CCWWGG	1 cut(s)	146
ErhI	CCWWGG	1 cut(s)	146
FaeI	CATG	8 cut(s)	91, 185, 197, 347, 690, 802, 869, 875
FaqI	GGGAC	2 cut(s)	591, 852
FatI	CATG	8 cut(s)	87, 181, 193, 343, 686, 798, 865, 871
FbaI	TGATCA	3 cut(s)	526, 627, 862
FblI	GTMKAC	1 cut(s)	368
Fnu4HI	GCNGC	7 cut(s)	170, 601, 604, 641, 644, 647, 944
FokI	GGATG	2 cut(s)	120, 536
Fsp4HI	GCNGC	7 cut(s)	170, 601, 604, 641, 644, 647, 944
FspBI	CTAG	8 cut(s)	222, 378, 561, 725, 756, 854, 998, 1090
GluI	GCNGC	7 cut(s)	170, 601, 604, 641, 644, 647, 944
GsuI	CTGGAG	2 cut(s)	442, 996
HaeIII	GGCC	2 cut(s)	286, 303
HapII	CCGG	1 cut(s)	925
Hin1II	CATG	8 cut(s)	91, 185, 197, 347, 690, 802, 869, 875
HincII	GTYRAC	1 cut(s)	309
HindII	GTYRAC	1 cut(s)	309
HinfI	GANTC	4 cut(s)	151, 767, 812, 949
HpaII	CCGG	1 cut(s)	925
HphI	GGTGA	2 cut(s)	283, 561
Hpy166II	GTNNAC	4 cut(s)	228, 309, 369, 453
Hpy188I	TCNGA	3 cut(s)	14, 787, 817
Hpy188III	TCNNGA	5 cut(s)	155, 317, 530, 665, 975
Hpy8I	GTNNAC	4 cut(s)	228, 309, 369, 453
HpyCH4III	ACNGT	2 cut(s)	887, 932
HpyCH4IV	ACGT	1 cut(s)	807
HpyCH4V	TGCA	9 cut(s)	193, 228, 258, 343, 453, 600, 643, 722, 943
HpyF10VI	GCNNNNNNNGC	6 cut(s)	178, 646, 655, 962, 1000, 1061
HpyF3I	CTNAG	5 cut(s)	173, 263, 281, 315, 1074
HpySE526I	ACGT	1 cut(s)	807
Hsp92II	CATG	8 cut(s)	91, 185, 197, 347, 690, 802, 869, 875
Ksp22I	TGATCA	3 cut(s)	526, 627, 862
Kzo9I	GATC	5 cut(s)	526, 627, 823, 862, 1057
LmnI	GCTCC	1 cut(s)	977
Lsp1109I	GCAGC	7 cut(s)	156, 612, 615, 627, 655, 658, 955
LweI	GCATC	1 cut(s)	62
MaeI	CTAG	8 cut(s)	222, 378, 561, 725, 756, 854, 998, 1090
MaeII	ACGT	1 cut(s)	807
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	5 cut(s)	528, 629, 825, 864, 1059
MboI	GATC	5 cut(s)	526, 627, 823, 862, 1057
MboII	GAAGA	5 cut(s)	170, 216, 307, 830, 963
MfeI	CAATTG	1 cut(s)	372
MhlI	GDGCHC	2 cut(s)	230, 455
MlyI	GAGTC	1 cut(s)	145
MseI	TTAA	2 cut(s)	29, 804
MslI	CAYNNNNRTG	3 cut(s)	797, 870, 986
MspA1I	CMGCKG	1 cut(s)	649
MspI	CCGG	1 cut(s)	925
MspR9I	CCNGG	3 cut(s)	288, 390, 1017
MunI	CAATTG	1 cut(s)	372
MvaI	CCWGG	3 cut(s)	288, 390, 1017
MvnI	CGCG	1 cut(s)	1055
MwoI	GCNNNNNNNGC	6 cut(s)	178, 646, 655, 962, 1000, 1061
NdeII	GATC	5 cut(s)	526, 627, 823, 862, 1057
NlaIII	CATG	8 cut(s)	91, 185, 197, 347, 690, 802, 869, 875
NlaIV	GGNNCC	2 cut(s)	851, 979
NspI	RCATGY	3 cut(s)	185, 347, 690
PaeI	GCATGC	1 cut(s)	347
PceI	AGGCCT	1 cut(s)	286
PfeI	GAWTC	3 cut(s)	767, 812, 949
PkrI	GCNGC	7 cut(s)	171, 602, 605, 642, 645, 648, 945
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PpuMI	RGGWCCY	1 cut(s)	143
Psp1406I	AACGTT	1 cut(s)	807
Psp5II	RGGWCCY	1 cut(s)	143
Psp6I	CCWGG	3 cut(s)	286, 388, 1015
PspGI	CCWGG	3 cut(s)	286, 388, 1015
PspN4I	GGNNCC	2 cut(s)	851, 979
PspPI	GGNCC	1 cut(s)	143
PspPPI	RGGWCCY	1 cut(s)	143
PstI	CTGCAG	2 cut(s)	602, 645
PstNI	CAGNNNCTG	1 cut(s)	649
PvuII	CAGCTG	1 cut(s)	649
RsaI	GTAC	4 cut(s)	565, 751, 876, 1045
RsaNI	GTAC	4 cut(s)	564, 750, 875, 1044
RseI	CAYNNNNRTG	3 cut(s)	797, 870, 986
SaqAI	TTAA	2 cut(s)	29, 804
SatI	GCNGC	7 cut(s)	170, 601, 604, 641, 644, 647, 944
Sau3AI	GATC	5 cut(s)	526, 627, 823, 862, 1057
Sau96I	GGNCC	1 cut(s)	143
ScaI	AGTACT	2 cut(s)	565, 1045
SchI	GAGTC	1 cut(s)	145
ScrFI	CCNGG	3 cut(s)	288, 390, 1017
SduI	GDGCHC	2 cut(s)	230, 455
SfaNI	GCATC	1 cut(s)	62
SfcI	CTRYAG	2 cut(s)	598, 641
SinI	GGWCC	1 cut(s)	143
SmiMI	CAYNNNNRTG	3 cut(s)	797, 870, 986
SmlI	CTYRAG	1 cut(s)	663
SmoI	CTYRAG	1 cut(s)	663
SpeI	ACTAGT	3 cut(s)	560, 724, 755
SphI	GCATGC	1 cut(s)	347
SseBI	AGGCCT	1 cut(s)	286
SsiI	CCGC	4 cut(s)	114, 122, 747, 1055
SspMI	CTAG	8 cut(s)	222, 378, 561, 725, 756, 854, 998, 1090
StuI	AGGCCT	1 cut(s)	286
StyD4I	CCNGG	3 cut(s)	286, 388, 1015
StyI	CCWWGG	1 cut(s)	146
TaaI	ACNGT	2 cut(s)	887, 932
TaiI	ACGT	1 cut(s)	810
TaqI	TCGA	2 cut(s)	56, 731
TatI	WGTACW	3 cut(s)	563, 874, 1043
TfiI	GAWTC	3 cut(s)	767, 812, 949
Tru1I	TTAA	2 cut(s)	29, 804
Tru9I	TTAA	2 cut(s)	29, 804
TscAI	CASTG	4 cut(s)	13, 181, 637, 799
TseI	GCWGC	7 cut(s)	169, 600, 603, 640, 643, 646, 943
TspDTI	ATGAA	3 cut(s)	686, 749, 1004
TspRI	CASTG	4 cut(s)	13, 181, 637, 799
VneI	GTGCAC	2 cut(s)	226, 451
VpaK11BI	GGWCC	1 cut(s)	143
XapI	RAATTY	1 cut(s)	64
XceI	RCATGY	3 cut(s)	185, 347, 690
XmiI	GTMKAC	1 cut(s)	368
XspI	CTAG	8 cut(s)	222, 378, 561, 725, 756, 854, 998, 1090
ZrmI	AGTACT	2 cut(s)	565, 1045

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.