Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0015861

Physical Location & Seq

Genomic Coordinates Reverse (-)

83337347 .. 83339040

Gene Structure 1694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG601500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAGCAGTATCCGAGTGATGGATAAATTAACAGAGAGAGAGATACGCGAGGCATCGATTGAGAATTTACAAGTGAAATTGAGGAACATGGCAAGTGTGCTGGTGGGATGGGGCGGTGTTGCGGAAAAAGGGTGGAGGAAAGGTCCTTGGACTCATGAAGAGGATAAGCTGCTCAGTGAGCATGTCAATTTGCATGGAGAGGGAAGATGGAATTCGGTTGCTAGGTGCACAGGGTTGAACAGGAGTGGGAAAAGTTGCAGACTTAGATGGGTGAATTATCTTAGGCCTGGACTGAAGAGAGGCCAGTTAACACCTCAGGAGGAAGGCATTATTATTGAATTGCATGCTTTATGGGGTAACAAGTGGTCTACAATTGCTAGATACTTGCCTGGGAGAACAGACAATGAGATAAAGAATTACTGGAGAACTCATTTCAAAAAGAAAGAGAAGTGCACCGAGAAGCAGCAAAAACGAAAAGCTCAAATCCTCAAAGAGAAGCAACAACAACAAGAAGAAGATATAAAGGATGATCAAGAAAACAAGAAAATAAAATCAGCCAGTACTAGTACTGCACCACAGGGACATAGTGAAGCCTTGGCCTGCAGCAGCGAATTACGAAATAATAATATGATCACTGATGAGCTGCAGCAGCTGGCACAGCCAACTCAAGAGATGAATGTTGTTTTTACATGCCCGAATATGGAGGAGGTTCAATGCTTACCTGCACTAGTGTCGATGAACCAATTAGGCGGTACTACTAGTGCTGTTGAATCTACTATATGGTCATCGGAAAACACTGCCATGATTAACATTGAATCAGAAGACGATCAAGGGTTTTGGGGACAACTCTGGAACCTAGATGATGATCATGGTCATGTACAAGCTAACCGTGTGGGATATCACACCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

303

Amino Acids

34.65

Weight (kDa)

6.77

Isoelectric Point (pI)

58.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	47 - 94	1.4e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	50 - 108	1.4e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	100 - 144	3.7e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	104 - 155	1.3e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30210
fragaria_vesca	FvH4_6g46440
malus_domestica	MD09G1073600.v1.1 MD17G1065100.v1.1
prunus_persica	Prupe.3G249600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0164981
rosa_laevigata	RLG00000021503
rosa_roxburghii	Rroxscaffold_2G00086140
rosa_rugosa	Rorug02G0511900 Rorug02G0512000
rosa_samantha	Rh2AG580100 Rh2BG591200 Rh2CG561700 Rh2DG601500
rosa_wichuraiana	Rw2G048150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	730
AccI	GTMKAC	1 cut(s)	368
AccII	CGCG	1 cut(s)	48
AciI	CCGC	3 cut(s)	114, 122, 750
AcsI	RAATTY	2 cut(s)	64, 211
AcuI	CTGAAG	1 cut(s)	314
AfaI	GTAC	4 cut(s)	562, 568, 754, 879
AfiI	CCNNNNNNNGG	2 cut(s)	19, 700
AgsI	TTSAA	6 cut(s)	238, 338, 436, 713, 770, 815
AhlI	ACTAGT	3 cut(s)	563, 727, 758
AjnI	CCWGG	2 cut(s)	286, 388
AluBI	AGCT	5 cut(s)	169, 479, 643, 652, 884
AluI	AGCT	5 cut(s)	169, 479, 643, 652, 884
Alw21I	GWGCWC	2 cut(s)	230, 455
Alw44I	GTGCAC	2 cut(s)	226, 451
AlwNI	CAGNNNCTG	1 cut(s)	652
AoxI	GGCC	3 cut(s)	284, 301, 597
ApaLI	GTGCAC	2 cut(s)	226, 451
ApeKI	GCWGC	7 cut(s)	169, 463, 603, 606, 643, 646, 649
ApoI	RAATTY	2 cut(s)	64, 211
AspS9I	GGNCC	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	143
AxyI	CCTNAGG	1 cut(s)	315
BaeGI	GKGCMC	2 cut(s)	230, 455
BbsI	GAAGAC	1 cut(s)	828
Bbv12I	GWGCWC	2 cut(s)	230, 455
BbvI	GCAGC	7 cut(s)	156, 475, 615, 618, 630, 658, 661
BccI	CCATC	4 cut(s)	13, 102, 201, 261
BcgI	CGANNNNNNTGC	2 cut(s)	714, 748
BciT130I	CCWGG	2 cut(s)	288, 390
BciVI	GTATCC	1 cut(s)	20
BclI	TGATCA	3 cut(s)	529, 630, 865
BcuI	ACTAGT	3 cut(s)	563, 727, 758
BfaI	CTAG	6 cut(s)	222, 378, 564, 728, 759, 857
BfmI	CTRYAG	2 cut(s)	601, 644
BfuAI	ACCTGC	1 cut(s)	730
BfuI	GTATCC	1 cut(s)	20
BisI	GCNGC	7 cut(s)	170, 464, 604, 607, 644, 647, 650
BlsI	GCNGC	7 cut(s)	171, 465, 605, 608, 645, 648, 651
BmcAI	AGTACT	2 cut(s)	562, 568
Bme1390I	CCNGG	2 cut(s)	288, 390
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	143
BmiI	GGNNCC	1 cut(s)	854
BmrFI	CCNGG	2 cut(s)	288, 390
BmsI	GCATC	1 cut(s)	62
BpiI	GAAGAC	1 cut(s)	828
BpmI	CTGGAG	1 cut(s)	442
BpuEI	CTTGAG	1 cut(s)	651
Bsa29I	ATCGAT	1 cut(s)	56
BsaBI	GATNNNNATC	1 cut(s)	864
BsaJI	CCNNGG	3 cut(s)	146, 389, 594
BsaXI	ACNNNNNCTCC	2 cut(s)	127, 157
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 700
Bse1I	ACTGG	4 cut(s)	304, 425, 558, 906
Bse21I	CCTNAGG	1 cut(s)	315
Bse8I	GATNNNNATC	1 cut(s)	864
BseBI	CCWGG	2 cut(s)	288, 390
BseCI	ATCGAT	1 cut(s)	56
BseDI	CCNNGG	3 cut(s)	146, 389, 594
BseGI	GGATG	2 cut(s)	113, 532
BseJI	GATNNNNATC	1 cut(s)	864
BseLI	CCNNNNNNNGG	2 cut(s)	19, 700
BseMII	CTCAG	2 cut(s)	187, 329
BseNI	ACTGG	4 cut(s)	304, 425, 558, 906
BseRI	GAGGAG	1 cut(s)	719
BseSI	GKGCMC	2 cut(s)	230, 455
BseXI	GCAGC	7 cut(s)	156, 475, 615, 618, 630, 658, 661
BsgI	GTGCAG	2 cut(s)	555, 708
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	3 cut(s)	286, 303, 599
BshVI	ATCGAT	1 cut(s)	56
BsiHKAI	GWGCWC	2 cut(s)	230, 455
BslFI	GGGAC	2 cut(s)	594, 855
BslI	CCNNNNNNNGG	2 cut(s)	19, 700
BsmFI	GGGAC	2 cut(s)	594, 855
BsnI	GGCC	3 cut(s)	286, 303, 599
Bsp1286I	GDGCHC	2 cut(s)	230, 455
Bsp1407I	TGTACA	1 cut(s)	877
Bsp143I	GATC	4 cut(s)	529, 630, 826, 865
BspACI	CCGC	3 cut(s)	114, 122, 750
BspANI	GGCC	3 cut(s)	286, 303, 599
BspCNI	CTCAG	2 cut(s)	186, 328
BspDI	ATCGAT	1 cut(s)	56
BspFNI	CGCG	1 cut(s)	48
BspHI	TCATGA	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	854
BspMAI	CTGCAG	2 cut(s)	605, 648
BspMI	ACCTGC	1 cut(s)	730
BsrGI	TGTACA	1 cut(s)	877
BsrI	ACTGG	4 cut(s)	304, 425, 558, 906
BssECI	CCNNGG	3 cut(s)	146, 389, 594
BssMI	GATC	4 cut(s)	529, 630, 826, 865
BssT1I	CCWWGG	2 cut(s)	146, 594
Bst2UI	CCWGG	2 cut(s)	288, 390
Bst4CI	ACNGT	1 cut(s)	890
Bst6I	CTCTTC	2 cut(s)	153, 290
BstAUI	TGTACA	1 cut(s)	877
BstC8I	GCNNGC	3 cut(s)	345, 601, 654
BstDEI	CTNAG	4 cut(s)	173, 263, 281, 315
BstF5I	GGATG	2 cut(s)	113, 532
BstFNI	CGCG	1 cut(s)	48
BstKTI	GATC	4 cut(s)	532, 633, 829, 868
BstMBI	GATC	4 cut(s)	529, 630, 826, 865
BstMWI	GCNNNNNNNGC	3 cut(s)	178, 649, 658
BstNI	CCWGG	2 cut(s)	288, 390
BstNSI	RCATGY	3 cut(s)	185, 347, 693
BstSCI	CCNGG	2 cut(s)	286, 388
BstSFI	CTRYAG	2 cut(s)	601, 644
BstSLI	GKGCMC	2 cut(s)	230, 455
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	7 cut(s)	156, 475, 615, 618, 630, 658, 661
BstV2I	GAAGAC	1 cut(s)	828
Bsu15I	ATCGAT	1 cut(s)	56
Bsu36I	CCTNAGG	1 cut(s)	315
BsuI	GTATCC	1 cut(s)	20
BsuRI	GGCC	3 cut(s)	286, 303, 599
BsuTUI	ATCGAT	1 cut(s)	56
BtsCI	GGATG	2 cut(s)	113, 532
BtsI	GCAGTG	1 cut(s)	795
BtsIMutI	CAGTG	3 cut(s)	181, 633, 795
BveI	ACCTGC	1 cut(s)	730
Cac8I	GCNNGC	3 cut(s)	345, 601, 654
CaiI	CAGNNNCTG	1 cut(s)	652
CciI	TCATGA	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	143
ClaI	ATCGAT	1 cut(s)	56
Csp6I	GTAC	4 cut(s)	561, 567, 753, 878
CviAII	CATG	9 cut(s)	88, 155, 182, 194, 344, 690, 802, 869, 875
CviQI	GTAC	4 cut(s)	561, 567, 753, 878
DdeI	CTNAG	4 cut(s)	173, 263, 281, 315
DpnI	GATC	4 cut(s)	531, 632, 828, 867
DpnII	GATC	4 cut(s)	529, 630, 826, 865
Eam1104I	CTCTTC	2 cut(s)	153, 290
EarI	CTCTTC	2 cut(s)	153, 290
Eco130I	CCWWGG	2 cut(s)	146, 594
Eco147I	AGGCCT	1 cut(s)	286
Eco32I	GATATC	1 cut(s)	899
Eco47I	GGWCC	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	314
Eco81I	CCTNAGG	1 cut(s)	315
EcoO109I	RGGNCCY	1 cut(s)	143
EcoRI	GAATTC	1 cut(s)	211
EcoRII	CCWGG	2 cut(s)	286, 388
EcoRV	GATATC	1 cut(s)	899
EcoT14I	CCWWGG	2 cut(s)	146, 594
ErhI	CCWWGG	2 cut(s)	146, 594
FaeI	CATG	9 cut(s)	91, 158, 185, 197, 347, 693, 805, 872, 878
FaqI	GGGAC	2 cut(s)	594, 855
FatI	CATG	9 cut(s)	87, 154, 181, 193, 343, 689, 801, 868, 874
FbaI	TGATCA	3 cut(s)	529, 630, 865
FblI	GTMKAC	1 cut(s)	368
Fnu4HI	GCNGC	7 cut(s)	170, 464, 604, 607, 644, 647, 650
FokI	GGATG	2 cut(s)	120, 539
Fsp4HI	GCNGC	7 cut(s)	170, 464, 604, 607, 644, 647, 650
FspBI	CTAG	6 cut(s)	222, 378, 564, 728, 759, 857
GluI	GCNGC	7 cut(s)	170, 464, 604, 607, 644, 647, 650
GsuI	CTGGAG	1 cut(s)	442
HaeIII	GGCC	3 cut(s)	286, 303, 599
Hin1II	CATG	9 cut(s)	91, 158, 185, 197, 347, 693, 805, 872, 878
HincII	GTYRAC	1 cut(s)	309
HindII	GTYRAC	1 cut(s)	309
HinfI	GANTC	3 cut(s)	151, 770, 815
HpaI	GTTAAC	1 cut(s)	309
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	4 cut(s)	228, 309, 369, 453
Hpy188I	TCNGA	3 cut(s)	14, 790, 820
Hpy188III	TCNNGA	5 cut(s)	155, 317, 533, 668, 850
Hpy8I	GTNNAC	4 cut(s)	228, 309, 369, 453
HpyAV	CCTTC	1 cut(s)	317
HpyCH4III	ACNGT	1 cut(s)	890
HpyCH4V	TGCA	9 cut(s)	193, 228, 258, 343, 453, 572, 603, 646, 725
HpyF10VI	GCNNNNNNNGC	3 cut(s)	178, 649, 658
HpyF3I	CTNAG	4 cut(s)	173, 263, 281, 315
Hsp92II	CATG	9 cut(s)	91, 158, 185, 197, 347, 693, 805, 872, 878
Ksp22I	TGATCA	3 cut(s)	529, 630, 865
KspAI	GTTAAC	1 cut(s)	309
Kzo9I	GATC	4 cut(s)	529, 630, 826, 865
Lsp1109I	GCAGC	7 cut(s)	156, 475, 615, 618, 630, 658, 661
LweI	GCATC	1 cut(s)	62
MaeI	CTAG	6 cut(s)	222, 378, 564, 728, 759, 857
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	4 cut(s)	531, 632, 828, 867
MboI	GATC	4 cut(s)	529, 630, 826, 865
MboII	GAAGA	6 cut(s)	170, 216, 307, 524, 527, 833
MfeI	CAATTG	1 cut(s)	372
MhlI	GDGCHC	2 cut(s)	230, 455
MlyI	GAGTC	1 cut(s)	145
MseI	TTAA	3 cut(s)	29, 308, 807
MslI	CAYNNNNRTG	2 cut(s)	800, 873
MspA1I	CMGCKG	1 cut(s)	652
MspR9I	CCNGG	2 cut(s)	288, 390
MunI	CAATTG	1 cut(s)	372
MvaI	CCWGG	2 cut(s)	288, 390
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	3 cut(s)	178, 649, 658
NdeII	GATC	4 cut(s)	529, 630, 826, 865
NlaIII	CATG	9 cut(s)	91, 158, 185, 197, 347, 693, 805, 872, 878
NlaIV	GGNNCC	1 cut(s)	854
NspI	RCATGY	3 cut(s)	185, 347, 693
PaeI	GCATGC	1 cut(s)	347
PagI	TCATGA	1 cut(s)	154
PceI	AGGCCT	1 cut(s)	286
PfeI	GAWTC	2 cut(s)	770, 815
PkrI	GCNGC	7 cut(s)	171, 465, 605, 608, 645, 648, 651
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PpuMI	RGGWCCY	1 cut(s)	143
Psp5II	RGGWCCY	1 cut(s)	143
Psp6I	CCWGG	2 cut(s)	286, 388
PspGI	CCWGG	2 cut(s)	286, 388
PspN4I	GGNNCC	1 cut(s)	854
PspPI	GGNCC	1 cut(s)	143
PspPPI	RGGWCCY	1 cut(s)	143
PstI	CTGCAG	2 cut(s)	605, 648
PstNI	CAGNNNCTG	1 cut(s)	652
PvuII	CAGCTG	1 cut(s)	652
RsaI	GTAC	4 cut(s)	562, 568, 754, 879
RsaNI	GTAC	4 cut(s)	561, 567, 753, 878
RseI	CAYNNNNRTG	2 cut(s)	800, 873
SaqAI	TTAA	3 cut(s)	29, 308, 807
SatI	GCNGC	7 cut(s)	170, 464, 604, 607, 644, 647, 650
Sau3AI	GATC	4 cut(s)	529, 630, 826, 865
Sau96I	GGNCC	1 cut(s)	143
ScaI	AGTACT	2 cut(s)	562, 568
SchI	GAGTC	1 cut(s)	145
ScrFI	CCNGG	2 cut(s)	288, 390
SduI	GDGCHC	2 cut(s)	230, 455
SfaNI	GCATC	1 cut(s)	62
SfcI	CTRYAG	2 cut(s)	601, 644
SinI	GGWCC	1 cut(s)	143
SmiMI	CAYNNNNRTG	2 cut(s)	800, 873
SmlI	CTYRAG	1 cut(s)	666
SmoI	CTYRAG	1 cut(s)	666
SpeI	ACTAGT	3 cut(s)	563, 727, 758
SphI	GCATGC	1 cut(s)	347
SseBI	AGGCCT	1 cut(s)	286
SsiI	CCGC	3 cut(s)	114, 122, 750
SspMI	CTAG	6 cut(s)	222, 378, 564, 728, 759, 857
StuI	AGGCCT	1 cut(s)	286
StyD4I	CCNGG	2 cut(s)	286, 388
StyI	CCWWGG	2 cut(s)	146, 594
TaaI	ACNGT	1 cut(s)	890
TaqI	TCGA	2 cut(s)	56, 734
TatI	WGTACW	3 cut(s)	560, 566, 877
TfiI	GAWTC	2 cut(s)	770, 815
Tru1I	TTAA	3 cut(s)	29, 308, 807
Tru9I	TTAA	3 cut(s)	29, 308, 807
TscAI	CASTG	3 cut(s)	181, 640, 802
TseI	GCWGC	7 cut(s)	169, 463, 603, 606, 643, 646, 649
TspDTI	ATGAA	3 cut(s)	171, 689, 752
TspRI	CASTG	3 cut(s)	181, 640, 802
VneI	GTGCAC	2 cut(s)	226, 451
VpaK11BI	GGWCC	1 cut(s)	143
XapI	RAATTY	2 cut(s)	64, 211
XceI	RCATGY	3 cut(s)	185, 347, 693
XmiI	GTMKAC	1 cut(s)	368
XspI	CTAG	6 cut(s)	222, 378, 564, 728, 759, 857
ZrmI	AGTACT	2 cut(s)	562, 568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.