FvH4_6g46440
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015861
Physical Location & Seq
Reverse (-)
35431631 .. 35433091
1461 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g46440.t1

Sequence Viewer

Length: 1002 bp
ATGGCAATGGCTGGTGTGATGATGGGATGGGGCGGTGTTGAGGAAAGAGGGTGGAGGAAAGGTCCTTGGACTCCTGAAGAGGATAAGCTGCTCAGTGAGCATGTCAATTTGCATGGAGAGGGAAGATGGAGTTCTGTTGCTAGGTGCACAGGGTTGAACAGGAGTGGGAAAAGCTGCAGACTTAGATGGGTGAATTATCTAAGGCCTGGACTGAAGAGAGGCCATTTAACACCTCAGGAGGAAGGCATTATTATTGAATTGCATGCTTTATGGGGTAACAAGTGGTCTACAATTGCTAGATACTTGCCTGGGAGAACAGACAATGAGATAAAGAACTACTGGAGAACTCATTTCAAAAAGAAAGACAAATGCACCGAGAAGCAGAAAAAACGAAAAGCTCAAATCCTAAAAGAGAAGCAACAACAATTGGAAGATGTAGAGACTGATCATGAAAACAAGAAAATAAAATCAGCCAATACTAGTACTGCACTACAGGGACATGGTGAAGCCTTGGCCTGCAGCAGCGAGTTACAAAATAATAATGTCATCACTGATGAGCTGCAGCAGCTGGCACAAGCAACTCAAGAGATGAATGTTGTATTTACATGCCCGAATATGGATGAGATTCAAAGCTTTCCTGTGCTAGCGTCGATGAACCAGTTAGGCGGTACCAGTACTAGTGTTGTTGAATCTACTATATGGTCATCCGATAACACTGCCATCATTAACATTGGATCAGAAGATGATCAAGGGTTTTGGGGACAACTCTGGAACCTAGACGATGATCATTGTCATGTACAAGCTAACCGCATGGAACCTCACACGAGCTGTAGCAATAGTGAGAGCCTGAACAGATTAGCCTTGCATCAGAACCAAGCAATTTCTGCTACATCTTTTGGTGCCATACACACTACTGGAGCTACTAGGGTTAACAATTTTTCTTGGGGAGAGGATATTCATACCGATAAGTGCTTCTATAGTGGATCAGGCTACATATTTTGA

Protein Analysis

334

Amino Acids

37.53

Weight (kDa)

6.36

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 20 - 67 2.2e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 23 - 81 6.8e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 73 - 117 4.4e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 77 - 128 9e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015861)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30210
fragaria_vesca FvH4_6g46440
malus_domestica MD09G1073600.v1.1 MD17G1065100.v1.1
prunus_persica Prupe.3G249600_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0164981
rosa_laevigata RLG00000021503
rosa_roxburghii Rroxscaffold_2G00086140
rosa_rugosa Rorug02G0511900 Rorug02G0512000
rosa_samantha Rh2AG580100 Rh2BG591200 Rh2CG561700 Rh2DG601500
rosa_wichuraiana Rw2G048150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 668
AccB1I GGYRCC 2 cut(s) 668, 899
AccI GTMKAC 1 cut(s) 287
AciI CCGC 3 cut(s) 33, 666, 808
AclWI GGATC 2 cut(s) 742, 991
AcuI CTGAAG 2 cut(s) 96, 233
AfaI GTAC 4 cut(s) 484, 670, 676, 798
AfiI CCNNNNNNNGG 1 cut(s) 616
AgsI TTSAA 5 cut(s) 157, 257, 355, 629, 689
AhlI ACTAGT 2 cut(s) 479, 677
AjnI CCWGG 2 cut(s) 205, 307
AluBI AGCT 9 cut(s) 88, 174, 398, 559, 568, 633, 803, 828, 920
AluI AGCT 9 cut(s) 88, 174, 398, 559, 568, 633, 803, 828, 920
Alw21I GWGCWC 1 cut(s) 149
Alw26I GTCTC 1 cut(s) 434
Alw44I GTGCAC 1 cut(s) 145
AlwI GGATC 2 cut(s) 742, 991
AlwNI CAGNNNCTG 1 cut(s) 568
AoxI GGCC 3 cut(s) 203, 220, 513
ApaLI GTGCAC 1 cut(s) 145
ApeKI GCWGC 7 cut(s) 88, 174, 519, 522, 559, 562, 565
Asp718I GGTACC 1 cut(s) 668
AspS9I GGNCC 1 cut(s) 62
AsuHPI GGTGA 2 cut(s) 202, 515
AsuNHI GCTAGC 1 cut(s) 643
AvaII GGWCC 1 cut(s) 62
AxyI CCTNAGG 1 cut(s) 234
BaeGI GKGCMC 1 cut(s) 149
BanI GGYRCC 2 cut(s) 668, 899
BauI CACGAG 1 cut(s) 823
Bbv12I GWGCWC 1 cut(s) 149
BbvI GCAGC 7 cut(s) 75, 161, 531, 534, 546, 574, 577
BccI CCATC 5 cut(s) 16, 21, 120, 180, 728
BcgI CGANNNNNNTGC 2 cut(s) 698, 732
BciT130I CCWGG 2 cut(s) 207, 309
BclI TGATCA 3 cut(s) 445, 745, 784
BcoDI GTCTC 1 cut(s) 434
BcuI ACTAGT 2 cut(s) 479, 677
BfaI CTAG 7 cut(s) 141, 297, 480, 644, 678, 776, 924
BfmI CTRYAG 6 cut(s) 175, 491, 517, 560, 829, 976
BisI GCNGC 7 cut(s) 89, 175, 520, 523, 560, 563, 566
BlsI GCNGC 7 cut(s) 90, 176, 521, 524, 561, 564, 567
BmcAI AGTACT 2 cut(s) 484, 676
Bme1390I CCNGG 2 cut(s) 207, 309
Bme18I GGWCC 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 4 cut(s) 670, 773, 816, 901
BmrFI CCNGG 2 cut(s) 207, 309
BmsI GCATC 1 cut(s) 874
BmtI GCTAGC 1 cut(s) 647
BpmI CTGGAG 2 cut(s) 361, 936
BpuEI CTTGAG 1 cut(s) 567
BsaJI CCNNGG 3 cut(s) 65, 308, 510
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
Bsc4I CCNNNNNNNGG 1 cut(s) 616
Bse1I ACTGG 4 cut(s) 344, 658, 672, 919
Bse21I CCTNAGG 1 cut(s) 234
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 2 cut(s) 207, 309
BseDI CCNNGG 3 cut(s) 65, 308, 510
BseGI GGATG 3 cut(s) 32, 625, 704
BseLI CCNNNNNNNGG 1 cut(s) 616
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 2 cut(s) 106, 248
BseNI ACTGG 4 cut(s) 344, 658, 672, 919
BseSI GKGCMC 1 cut(s) 149
BseXI GCAGC 7 cut(s) 75, 161, 531, 534, 546, 574, 577
BsgI GTGCAG 1 cut(s) 471
BshFI GGCC 3 cut(s) 205, 222, 515
BshNI GGYRCC 2 cut(s) 668, 899
BsiHKAI GWGCWC 1 cut(s) 149
BslFI GGGAC 2 cut(s) 510, 774
BslI CCNNNNNNNGG 1 cut(s) 616
BsmAI GTCTC 1 cut(s) 434
BsmFI GGGAC 2 cut(s) 510, 774
BsnI GGCC 3 cut(s) 205, 222, 515
Bsp1286I GDGCHC 1 cut(s) 149
Bsp1407I TGTACA 1 cut(s) 796
Bsp143I GATC 5 cut(s) 445, 734, 745, 784, 983
BspACI CCGC 3 cut(s) 33, 666, 808
BspANI GGCC 3 cut(s) 205, 222, 515
BspCNI CTCAG 2 cut(s) 105, 247
BspHI TCATGA 1 cut(s) 448
BspLI GGNNCC 4 cut(s) 670, 773, 816, 901
BspMAI CTGCAG 3 cut(s) 179, 521, 564
BspOI GCTAGC 1 cut(s) 647
BspPI GGATC 2 cut(s) 742, 991
BspT107I GGYRCC 2 cut(s) 668, 899
BsrDI GCAATG 1 cut(s) 12
BsrGI TGTACA 1 cut(s) 796
BsrI ACTGG 4 cut(s) 344, 658, 672, 919
BssECI CCNNGG 3 cut(s) 65, 308, 510
BssMI GATC 5 cut(s) 445, 734, 745, 784, 983
BssSI CACGAG 1 cut(s) 823
BssT1I CCWWGG 2 cut(s) 65, 510
Bst2BI CACGAG 1 cut(s) 823
Bst2UI CCWGG 2 cut(s) 207, 309
Bst6I CTCTTC 2 cut(s) 72, 209
BstAPI GCANNNNNTGC 1 cut(s) 884
BstAUI TGTACA 1 cut(s) 796
BstC8I GCNNGC 4 cut(s) 264, 517, 570, 645
BstDEI CTNAG 4 cut(s) 92, 182, 200, 234
BstF5I GGATG 3 cut(s) 32, 625, 704
BstKTI GATC 5 cut(s) 448, 737, 748, 787, 986
BstMAI GTCTC 1 cut(s) 434
BstMBI GATC 5 cut(s) 445, 734, 745, 784, 983
BstMWI GCNNNNNNNGC 3 cut(s) 97, 565, 884
BstNI CCWGG 2 cut(s) 207, 309
BstNSI RCATGY 3 cut(s) 104, 266, 609
BstSCI CCNGG 2 cut(s) 205, 307
BstSFI CTRYAG 6 cut(s) 175, 491, 517, 560, 829, 976
BstSLI GKGCMC 1 cut(s) 149
BstV1I GCAGC 7 cut(s) 75, 161, 531, 534, 546, 574, 577
Bsu36I CCTNAGG 1 cut(s) 234
BsuRI GGCC 3 cut(s) 205, 222, 515
BtsCI GGATG 3 cut(s) 32, 625, 704
BtsI GCAGTG 1 cut(s) 714
BtsIMutI CAGTG 3 cut(s) 100, 549, 714
Cac8I GCNNGC 4 cut(s) 264, 517, 570, 645
CaiI CAGNNNCTG 1 cut(s) 568
CciI TCATGA 1 cut(s) 448
Cfr13I GGNCC 1 cut(s) 62
CseI GACGC 1 cut(s) 636
Csp6I GTAC 4 cut(s) 483, 669, 675, 797
CviAII CATG 8 cut(s) 101, 113, 263, 449, 500, 606, 794, 811
CviQI GTAC 4 cut(s) 483, 669, 675, 797
DdeI CTNAG 4 cut(s) 92, 182, 200, 234
DpnI GATC 5 cut(s) 447, 736, 747, 786, 985
DpnII GATC 5 cut(s) 445, 734, 745, 784, 983
Eam1104I CTCTTC 2 cut(s) 72, 209
EarI CTCTTC 2 cut(s) 72, 209
Eco130I CCWWGG 2 cut(s) 65, 510
Eco147I AGGCCT 1 cut(s) 205
Eco47I GGWCC 1 cut(s) 62
Eco57I CTGAAG 2 cut(s) 96, 233
Eco81I CCTNAGG 1 cut(s) 234
EcoO109I RGGNCCY 1 cut(s) 62
EcoRII CCWGG 2 cut(s) 205, 307
EcoT14I CCWWGG 2 cut(s) 65, 510
ErhI CCWWGG 2 cut(s) 65, 510
FaeI CATG 8 cut(s) 104, 116, 266, 452, 503, 609, 797, 814
FaqI GGGAC 2 cut(s) 510, 774
FatI CATG 8 cut(s) 100, 112, 262, 448, 499, 605, 793, 810
FbaI TGATCA 3 cut(s) 445, 745, 784
FblI GTMKAC 1 cut(s) 287
Fnu4HI GCNGC 7 cut(s) 89, 175, 520, 523, 560, 563, 566
FokI GGATG 3 cut(s) 39, 632, 691
Fsp4HI GCNGC 7 cut(s) 89, 175, 520, 523, 560, 563, 566
FspBI CTAG 7 cut(s) 141, 297, 480, 644, 678, 776, 924
GluI GCNGC 7 cut(s) 89, 175, 520, 523, 560, 563, 566
GsuI CTGGAG 2 cut(s) 361, 936
HaeIII GGCC 3 cut(s) 205, 222, 515
HgaI GACGC 1 cut(s) 636
Hin1II CATG 8 cut(s) 104, 116, 266, 452, 503, 609, 797, 814
HincII GTYRAC 1 cut(s) 931
HindII GTYRAC 1 cut(s) 931
HindIII AAGCTT 1 cut(s) 631
HinfI GANTC 3 cut(s) 70, 625, 689
HpaI GTTAAC 1 cut(s) 931
HphI GGTGA 2 cut(s) 202, 515
Hpy166II GTNNAC 3 cut(s) 147, 288, 931
Hpy188I TCNGA 3 cut(s) 709, 739, 870
Hpy188III TCNNGA 5 cut(s) 74, 236, 449, 584, 769
Hpy8I GTNNAC 3 cut(s) 147, 288, 931
Hpy99I CGWCG 1 cut(s) 652
HpyAV CCTTC 1 cut(s) 236
HpyCH4V TGCA 9 cut(s) 112, 147, 177, 262, 372, 488, 519, 562, 865
HpyF10VI GCNNNNNNNGC 3 cut(s) 97, 565, 884
HpyF3I CTNAG 4 cut(s) 92, 182, 200, 234
Hsp92II CATG 8 cut(s) 104, 116, 266, 452, 503, 609, 797, 814
KpnI GGTACC 1 cut(s) 672
Ksp22I TGATCA 3 cut(s) 445, 745, 784
KspAI GTTAAC 1 cut(s) 931
Kzo9I GATC 5 cut(s) 445, 734, 745, 784, 983
LmnI GCTCC 1 cut(s) 917
Lsp1109I GCAGC 7 cut(s) 75, 161, 531, 534, 546, 574, 577
LweI GCATC 1 cut(s) 874
MaeI CTAG 7 cut(s) 141, 297, 480, 644, 678, 776, 924
MaeIII GTNAC 2 cut(s) 275, 528
MalI GATC 5 cut(s) 447, 736, 747, 786, 985
MboI GATC 5 cut(s) 445, 734, 745, 784, 983
MboII GAAGA 5 cut(s) 89, 135, 226, 443, 752
MfeI CAATTG 2 cut(s) 291, 425
MhlI GDGCHC 1 cut(s) 149
MluCI AATT 7 cut(s) 106, 193, 257, 291, 425, 879, 934
MlyI GAGTC 1 cut(s) 64
MseI TTAA 3 cut(s) 227, 726, 930
MslI CAYNNNNRTG 1 cut(s) 792
MspA1I CMGCKG 1 cut(s) 568
MspR9I CCNGG 2 cut(s) 207, 309
MunI CAATTG 2 cut(s) 291, 425
MvaI CCWGG 2 cut(s) 207, 309
MwoI GCNNNNNNNGC 3 cut(s) 97, 565, 884
NdeII GATC 5 cut(s) 445, 734, 745, 784, 983
NheI GCTAGC 1 cut(s) 643
NlaIII CATG 8 cut(s) 104, 116, 266, 452, 503, 609, 797, 814
NlaIV GGNNCC 4 cut(s) 670, 773, 816, 901
NspI RCATGY 3 cut(s) 104, 266, 609
PaeI GCATGC 1 cut(s) 266
PagI TCATGA 1 cut(s) 448
PceI AGGCCT 1 cut(s) 205
PfeI GAWTC 2 cut(s) 625, 689
PkrI GCNGC 7 cut(s) 90, 176, 521, 524, 561, 564, 567
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PpuMI RGGWCCY 1 cut(s) 62
Psp5II RGGWCCY 1 cut(s) 62
Psp6I CCWGG 2 cut(s) 205, 307
PspGI CCWGG 2 cut(s) 205, 307
PspN4I GGNNCC 4 cut(s) 670, 773, 816, 901
PspPI GGNCC 1 cut(s) 62
PspPPI RGGWCCY 1 cut(s) 62
PstI CTGCAG 3 cut(s) 179, 521, 564
PstNI CAGNNNCTG 1 cut(s) 568
PvuII CAGCTG 1 cut(s) 568
RsaI GTAC 4 cut(s) 484, 670, 676, 798
RsaNI GTAC 4 cut(s) 483, 669, 675, 797
RseI CAYNNNNRTG 1 cut(s) 792
SaqAI TTAA 3 cut(s) 227, 726, 930
SatI GCNGC 7 cut(s) 89, 175, 520, 523, 560, 563, 566
Sau3AI GATC 5 cut(s) 445, 734, 745, 784, 983
Sau96I GGNCC 1 cut(s) 62
ScaI AGTACT 2 cut(s) 484, 676
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 2 cut(s) 207, 309
SduI GDGCHC 1 cut(s) 149
SfaNI GCATC 1 cut(s) 874
SfcI CTRYAG 6 cut(s) 175, 491, 517, 560, 829, 976
SinI GGWCC 1 cut(s) 62
SmiMI CAYNNNNRTG 1 cut(s) 792
SmlI CTYRAG 1 cut(s) 582
SmoI CTYRAG 1 cut(s) 582
SpeI ACTAGT 2 cut(s) 479, 677
SphI GCATGC 1 cut(s) 266
Sse9I AATT 7 cut(s) 106, 193, 257, 291, 425, 879, 934
SseBI AGGCCT 1 cut(s) 205
SsiI CCGC 3 cut(s) 33, 666, 808
SspMI CTAG 7 cut(s) 141, 297, 480, 644, 678, 776, 924
StuI AGGCCT 1 cut(s) 205
StyD4I CCNGG 2 cut(s) 205, 307
StyI CCWWGG 2 cut(s) 65, 510
TaqI TCGA 1 cut(s) 650
TasI AATT 7 cut(s) 106, 193, 257, 291, 425, 879, 934
TatI WGTACW 3 cut(s) 482, 674, 796
TfiI GAWTC 2 cut(s) 625, 689
Tru1I TTAA 3 cut(s) 227, 726, 930
Tru9I TTAA 3 cut(s) 227, 726, 930
TscAI CASTG 3 cut(s) 100, 556, 721
TseI GCWGC 7 cut(s) 88, 174, 519, 522, 559, 562, 565
TspDTI ATGAA 4 cut(s) 465, 605, 668, 947
TspRI CASTG 3 cut(s) 100, 556, 721
VneI GTGCAC 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 62
XceI RCATGY 3 cut(s) 104, 266, 609
XmiI GTMKAC 1 cut(s) 287
XspI CTAG 7 cut(s) 141, 297, 480, 644, 678, 776, 924
ZrmI AGTACT 2 cut(s) 484, 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.