Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0015861

Physical Location & Seq

Genomic Coordinates Forward (+)

8409611 .. 8411062

Gene Structure 1452 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00086140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGCAAGTGTGCTGGTGGGATGGGCTGGTGTTGCGGAAAAAGGGTGGAGGAAAGGTCCTTGGACTCATGAAGAGGATAAGCTGCTCAGTGAGCATGTCAATTTGCATGGAGAGGGAAGATGGAATTCGGTTGCTAGGTGCACAGGGTTGAACAGGAGTGGGAAAAGTTGCAGACTTAGATGGGTGAATTATCTTAGGCCTGGACTGAAGAGAGGCCAGTTAACACCTCAGGAGGAAGGCATTATTATTGAATTGCATGCTTTATGGGGTAACAAGTGGTCTACAATTGCTAGATACTTGCCTGGGAGAACAGACAATGAGATAAAGAATTACTGGAGAACTCATTTCAAAAAGGAAGAGAAGTGCACCGAGAAGCAGCAAAAACGAAAAGCTCAAATCCTCAAAGAGAAGCAACAACAACAACAACAAGAAGATATAAAGGATGATCAAGAAAACAAGAAAATAAAATCAGCCAGTACTAGTACTGCACCACAGGGACATATTGGAGCCTTGGCCTGCGGCAGCGAATTACGAAATAATAATATGATCACTGATGAGCTGCAGCAGCTGGCACAGCCAACTCAAGAGATGAATGTTGTTTTTACATGCCCGAATATGGAGGAGGTTCAATGCTTACCTGCACTAGTGTCGATGAACCAATTAGGCGGTACTACTAGTGCTGTTGAATCTACTATATGGTCATCGGAAAACACTGCCATGATTAACATTGAATCAGAAAACGATCAAGGGTTTTGGGGACAACTCTGGAACCTAGACGATGATCATGGTCATGTACAAGCTGACCGCGTGGGACATCACACCAGTTATAGCAATAGTGCGTGCCGGAACAGTTTAGCCTTGCAGCAGAATCAAGCAATTACAGCTACATCTTCTGGAGCCATACACAATGAAGCTGCTAGGGCTAACAATTTTTCTTGGGGAGAGGATATTCGTTCCGATAAGTACTTCTATAGCGGATCAGGCTGTACACATTCTAAGGAGGGCTATACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

337

Amino Acids

37.97

Weight (kDa)

6.64

Isoelectric Point (pI)

54.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	18 - 65	1.6e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	21 - 79	1.9e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	71 - 115	4.4e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	75 - 124	2.9e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30210
fragaria_vesca	FvH4_6g46440
malus_domestica	MD09G1073600.v1.1 MD17G1065100.v1.1
prunus_persica	Prupe.3G249600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0164981
rosa_laevigata	RLG00000021503
rosa_roxburghii	Rroxscaffold_2G00086140
rosa_rugosa	Rorug02G0511900 Rorug02G0512000
rosa_samantha	Rh2AG580100 Rh2BG591200 Rh2CG561700 Rh2DG601500
rosa_wichuraiana	Rw2G048150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	646
AccI	GTMKAC	1 cut(s)	281
AccII	CGCG	1 cut(s)	807
AciI	CCGC	5 cut(s)	35, 519, 666, 805, 975
AclWI	GGATC	1 cut(s)	985
AcsI	RAATTY	1 cut(s)	124
AcuI	CTGAAG	1 cut(s)	227
AfaI	GTAC	6 cut(s)	478, 484, 670, 795, 965, 988
AfiI	CCNNNNNNNGG	1 cut(s)	616
AgsI	TTSAA	6 cut(s)	151, 251, 349, 629, 686, 731
AhlI	ACTAGT	3 cut(s)	479, 643, 674
AjnI	CCWGG	2 cut(s)	199, 301
AluBI	AGCT	7 cut(s)	82, 392, 559, 568, 800, 884, 914
AluI	AGCT	7 cut(s)	82, 392, 559, 568, 800, 884, 914
Alw21I	GWGCWC	2 cut(s)	143, 368
Alw44I	GTGCAC	2 cut(s)	139, 364
AlwI	GGATC	1 cut(s)	985
AlwNI	CAGNNNCTG	1 cut(s)	568
AoxI	GGCC	3 cut(s)	197, 214, 513
ApaLI	GTGCAC	2 cut(s)	139, 364
ApeKI	GCWGC	8 cut(s)	82, 376, 522, 559, 562, 565, 862, 914
ApoI	RAATTY	1 cut(s)	124
AspS9I	GGNCC	1 cut(s)	56
AsuHPI	GGTGA	1 cut(s)	196
AvaII	GGWCC	1 cut(s)	56
AxyI	CCTNAGG	1 cut(s)	228
BaeGI	GKGCMC	2 cut(s)	143, 368
Bbv12I	GWGCWC	2 cut(s)	143, 368
BbvI	GCAGC	8 cut(s)	69, 388, 534, 546, 574, 577, 874, 901
BccI	CCATC	3 cut(s)	15, 114, 174
BcgI	CGANNNNNNTGC	2 cut(s)	630, 664
BciT130I	CCWGG	2 cut(s)	201, 303
BclI	TGATCA	3 cut(s)	445, 546, 781
BcuI	ACTAGT	3 cut(s)	479, 643, 674
BfaI	CTAG	8 cut(s)	135, 291, 480, 644, 675, 773, 918, 1012
BfmI	CTRYAG	2 cut(s)	560, 970
BfuAI	ACCTGC	1 cut(s)	646
BisI	GCNGC	9 cut(s)	83, 377, 520, 523, 560, 563, 566, 863, 915
BlsI	GCNGC	9 cut(s)	84, 378, 521, 524, 561, 564, 567, 864, 916
BmcAI	AGTACT	3 cut(s)	478, 484, 965
Bme1390I	CCNGG	2 cut(s)	201, 303
Bme18I	GGWCC	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	3 cut(s)	508, 770, 898
BmrFI	CCNGG	2 cut(s)	201, 303
BpmI	CTGGAG	2 cut(s)	355, 915
BpuEI	CTTGAG	1 cut(s)	567
BsaJI	CCNNGG	3 cut(s)	59, 302, 510
BsaXI	ACNNNNNCTCC	2 cut(s)	40, 70
Bsc4I	CCNNNNNNNGG	1 cut(s)	616
Bse1I	ACTGG	4 cut(s)	217, 338, 474, 822
Bse21I	CCTNAGG	1 cut(s)	228
BseBI	CCWGG	2 cut(s)	201, 303
BseDI	CCNNGG	3 cut(s)	59, 302, 510
BseGI	GGATG	2 cut(s)	26, 448
BseLI	CCNNNNNNNGG	1 cut(s)	616
BseMII	CTCAG	2 cut(s)	100, 242
BseNI	ACTGG	4 cut(s)	217, 338, 474, 822
BseRI	GAGGAG	1 cut(s)	635
BseSI	GKGCMC	2 cut(s)	143, 368
BseXI	GCAGC	8 cut(s)	69, 388, 534, 546, 574, 577, 874, 901
BsgI	GTGCAG	2 cut(s)	471, 624
Bsh1236I	CGCG	1 cut(s)	807
BshFI	GGCC	3 cut(s)	199, 216, 515
BsiHKAI	GWGCWC	2 cut(s)	143, 368
BsiSI	CCGG	1 cut(s)	844
BslFI	GGGAC	3 cut(s)	510, 771, 825
BslI	CCNNNNNNNGG	1 cut(s)	616
BsmFI	GGGAC	3 cut(s)	510, 771, 825
BsnI	GGCC	3 cut(s)	199, 216, 515
Bsp1286I	GDGCHC	2 cut(s)	143, 368
Bsp1407I	TGTACA	2 cut(s)	793, 986
Bsp143I	GATC	5 cut(s)	445, 546, 742, 781, 977
BspACI	CCGC	5 cut(s)	35, 519, 666, 805, 975
BspANI	GGCC	3 cut(s)	199, 216, 515
BspCNI	CTCAG	2 cut(s)	99, 241
BspFNI	CGCG	1 cut(s)	807
BspHI	TCATGA	1 cut(s)	67
BspLI	GGNNCC	3 cut(s)	508, 770, 898
BspMAI	CTGCAG	1 cut(s)	564
BspMI	ACCTGC	1 cut(s)	646
BspPI	GGATC	1 cut(s)	985
BsrGI	TGTACA	2 cut(s)	793, 986
BsrI	ACTGG	4 cut(s)	217, 338, 474, 822
BssECI	CCNNGG	3 cut(s)	59, 302, 510
BssMI	GATC	5 cut(s)	445, 546, 742, 781, 977
BssT1I	CCWWGG	2 cut(s)	59, 510
Bst2UI	CCWGG	2 cut(s)	201, 303
Bst4CI	ACNGT	1 cut(s)	851
Bst6I	CTCTTC	3 cut(s)	66, 203, 351
BstAUI	TGTACA	2 cut(s)	793, 986
BstC8I	GCNNGC	4 cut(s)	258, 517, 570, 841
BstDEI	CTNAG	5 cut(s)	86, 176, 194, 228, 996
BstF5I	GGATG	2 cut(s)	26, 448
BstFNI	CGCG	1 cut(s)	807
BstKTI	GATC	5 cut(s)	448, 549, 745, 784, 980
BstMBI	GATC	5 cut(s)	445, 546, 742, 781, 977
BstMWI	GCNNNNNNNGC	7 cut(s)	32, 91, 565, 574, 881, 920, 981
BstNI	CCWGG	2 cut(s)	201, 303
BstNSI	RCATGY	3 cut(s)	98, 260, 609
BstSCI	CCNGG	2 cut(s)	199, 301
BstSFI	CTRYAG	2 cut(s)	560, 970
BstSLI	GKGCMC	2 cut(s)	143, 368
BstUI	CGCG	1 cut(s)	807
BstV1I	GCAGC	8 cut(s)	69, 388, 534, 546, 574, 577, 874, 901
Bsu36I	CCTNAGG	1 cut(s)	228
BsuRI	GGCC	3 cut(s)	199, 216, 515
BtsCI	GGATG	2 cut(s)	26, 448
BtsI	GCAGTG	1 cut(s)	711
BtsIMutI	CAGTG	3 cut(s)	94, 549, 711
BveI	ACCTGC	1 cut(s)	646
Cac8I	GCNNGC	4 cut(s)	258, 517, 570, 841
CaiI	CAGNNNCTG	1 cut(s)	568
CciI	TCATGA	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	56
Csp6I	GTAC	6 cut(s)	477, 483, 669, 794, 964, 987
CviAII	CATG	8 cut(s)	68, 95, 107, 257, 606, 718, 785, 791
CviQI	GTAC	6 cut(s)	477, 483, 669, 794, 964, 987
DdeI	CTNAG	5 cut(s)	86, 176, 194, 228, 996
DpnI	GATC	5 cut(s)	447, 548, 744, 783, 979
DpnII	GATC	5 cut(s)	445, 546, 742, 781, 977
Eam1104I	CTCTTC	3 cut(s)	66, 203, 351
EarI	CTCTTC	3 cut(s)	66, 203, 351
Eco130I	CCWWGG	2 cut(s)	59, 510
Eco147I	AGGCCT	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	227
Eco81I	CCTNAGG	1 cut(s)	228
EcoO109I	RGGNCCY	1 cut(s)	56
EcoRI	GAATTC	1 cut(s)	124
EcoRII	CCWGG	2 cut(s)	199, 301
EcoT14I	CCWWGG	2 cut(s)	59, 510
ErhI	CCWWGG	2 cut(s)	59, 510
FaeI	CATG	8 cut(s)	71, 98, 110, 260, 609, 721, 788, 794
FaqI	GGGAC	3 cut(s)	510, 771, 825
FatI	CATG	8 cut(s)	67, 94, 106, 256, 605, 717, 784, 790
FbaI	TGATCA	3 cut(s)	445, 546, 781
FblI	GTMKAC	1 cut(s)	281
Fnu4HI	GCNGC	9 cut(s)	83, 377, 520, 523, 560, 563, 566, 863, 915
FokI	GGATG	2 cut(s)	33, 455
Fsp4HI	GCNGC	9 cut(s)	83, 377, 520, 523, 560, 563, 566, 863, 915
FspBI	CTAG	8 cut(s)	135, 291, 480, 644, 675, 773, 918, 1012
GluI	GCNGC	9 cut(s)	83, 377, 520, 523, 560, 563, 566, 863, 915
GsuI	CTGGAG	2 cut(s)	355, 915
HaeIII	GGCC	3 cut(s)	199, 216, 515
HapII	CCGG	1 cut(s)	844
Hin1II	CATG	8 cut(s)	71, 98, 110, 260, 609, 721, 788, 794
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HinfI	GANTC	4 cut(s)	64, 686, 731, 868
HpaI	GTTAAC	1 cut(s)	222
HpaII	CCGG	1 cut(s)	844
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	5 cut(s)	141, 222, 282, 366, 989
Hpy188I	TCNGA	3 cut(s)	706, 736, 958
Hpy188III	TCNNGA	6 cut(s)	68, 230, 449, 584, 766, 894
Hpy8I	GTNNAC	5 cut(s)	141, 222, 282, 366, 989
HpyAV	CCTTC	1 cut(s)	230
HpyCH4III	ACNGT	1 cut(s)	851
HpyCH4V	TGCA	9 cut(s)	106, 141, 171, 256, 366, 488, 562, 641, 862
HpyF10VI	GCNNNNNNNGC	7 cut(s)	32, 91, 565, 574, 881, 920, 981
HpyF3I	CTNAG	5 cut(s)	86, 176, 194, 228, 996
Hsp92II	CATG	8 cut(s)	71, 98, 110, 260, 609, 721, 788, 794
Ksp22I	TGATCA	3 cut(s)	445, 546, 781
KspAI	GTTAAC	1 cut(s)	222
Kzo9I	GATC	5 cut(s)	445, 546, 742, 781, 977
LmnI	GCTCC	2 cut(s)	506, 896
Lsp1109I	GCAGC	8 cut(s)	69, 388, 534, 546, 574, 577, 874, 901
MaeI	CTAG	8 cut(s)	135, 291, 480, 644, 675, 773, 918, 1012
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	5 cut(s)	447, 548, 744, 783, 979
MboI	GATC	5 cut(s)	445, 546, 742, 781, 977
MboII	GAAGA	6 cut(s)	83, 129, 220, 368, 443, 882
MfeI	CAATTG	1 cut(s)	285
MhlI	GDGCHC	2 cut(s)	143, 368
MlyI	GAGTC	1 cut(s)	58
MseI	TTAA	2 cut(s)	221, 723
MslI	CAYNNNNRTG	2 cut(s)	716, 789
MspA1I	CMGCKG	1 cut(s)	568
MspI	CCGG	1 cut(s)	844
MspR9I	CCNGG	2 cut(s)	201, 303
MunI	CAATTG	1 cut(s)	285
MvaI	CCWGG	2 cut(s)	201, 303
MvnI	CGCG	1 cut(s)	807
MwoI	GCNNNNNNNGC	7 cut(s)	32, 91, 565, 574, 881, 920, 981
NdeII	GATC	5 cut(s)	445, 546, 742, 781, 977
NlaIII	CATG	8 cut(s)	71, 98, 110, 260, 609, 721, 788, 794
NlaIV	GGNNCC	3 cut(s)	508, 770, 898
NspI	RCATGY	3 cut(s)	98, 260, 609
PaeI	GCATGC	1 cut(s)	260
PagI	TCATGA	1 cut(s)	67
PceI	AGGCCT	1 cut(s)	199
PfeI	GAWTC	3 cut(s)	686, 731, 868
PkrI	GCNGC	9 cut(s)	84, 378, 521, 524, 561, 564, 567, 864, 916
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
PpuMI	RGGWCCY	1 cut(s)	56
Psp5II	RGGWCCY	1 cut(s)	56
Psp6I	CCWGG	2 cut(s)	199, 301
PspGI	CCWGG	2 cut(s)	199, 301
PspN4I	GGNNCC	3 cut(s)	508, 770, 898
PspPI	GGNCC	1 cut(s)	56
PspPPI	RGGWCCY	1 cut(s)	56
PstI	CTGCAG	1 cut(s)	564
PstNI	CAGNNNCTG	1 cut(s)	568
PvuII	CAGCTG	1 cut(s)	568
RsaI	GTAC	6 cut(s)	478, 484, 670, 795, 965, 988
RsaNI	GTAC	6 cut(s)	477, 483, 669, 794, 964, 987
RseI	CAYNNNNRTG	2 cut(s)	716, 789
SaqAI	TTAA	2 cut(s)	221, 723
SatI	GCNGC	9 cut(s)	83, 377, 520, 523, 560, 563, 566, 863, 915
Sau3AI	GATC	5 cut(s)	445, 546, 742, 781, 977
Sau96I	GGNCC	1 cut(s)	56
ScaI	AGTACT	3 cut(s)	478, 484, 965
SchI	GAGTC	1 cut(s)	58
ScrFI	CCNGG	2 cut(s)	201, 303
SduI	GDGCHC	2 cut(s)	143, 368
SfcI	CTRYAG	2 cut(s)	560, 970
SinI	GGWCC	1 cut(s)	56
SmiMI	CAYNNNNRTG	2 cut(s)	716, 789
SmlI	CTYRAG	1 cut(s)	582
SmoI	CTYRAG	1 cut(s)	582
SpeI	ACTAGT	3 cut(s)	479, 643, 674
SphI	GCATGC	1 cut(s)	260
SseBI	AGGCCT	1 cut(s)	199
SsiI	CCGC	5 cut(s)	35, 519, 666, 805, 975
SspMI	CTAG	8 cut(s)	135, 291, 480, 644, 675, 773, 918, 1012
StuI	AGGCCT	1 cut(s)	199
StyD4I	CCNGG	2 cut(s)	199, 301
StyI	CCWWGG	2 cut(s)	59, 510
TaaI	ACNGT	1 cut(s)	851
TaqI	TCGA	1 cut(s)	650
TatI	WGTACW	5 cut(s)	476, 482, 793, 963, 986
TauI	GCSGC	1 cut(s)	522
TfiI	GAWTC	3 cut(s)	686, 731, 868
Tru1I	TTAA	2 cut(s)	221, 723
Tru9I	TTAA	2 cut(s)	221, 723
TscAI	CASTG	3 cut(s)	94, 556, 718
TseI	GCWGC	8 cut(s)	82, 376, 522, 559, 562, 565, 862, 914
TspDTI	ATGAA	4 cut(s)	84, 605, 668, 924
TspRI	CASTG	3 cut(s)	94, 556, 718
VneI	GTGCAC	2 cut(s)	139, 364
VpaK11BI	GGWCC	1 cut(s)	56
XapI	RAATTY	1 cut(s)	124
XceI	RCATGY	3 cut(s)	98, 260, 609
XmiI	GTMKAC	1 cut(s)	281
XspI	CTAG	8 cut(s)	135, 291, 480, 644, 675, 773, 918, 1012
ZrmI	AGTACT	3 cut(s)	478, 484, 965

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.