Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0015861

Physical Location & Seq

Genomic Coordinates Reverse (-)

75552219 .. 75553576

Gene Structure 1358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G048150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCAAGTGTGCTGGTGGGATGGGGCGGTGTTGCGGAAAAAGGGTGGAGGAAAGGTCCTTGGACTCCCGAAGAGGATAAGCTGCTCAGTGAGCATGTCAATTTGCATGGAGAGGGAAGATGGAGTTCTGTTGCTAGGTGCACAGGGTTGAACAGGAGTGGGAAAAGTTGCAGACTTAGATGGGTGAATTATCTTAGGCCTGGACTGAAGAGAGGCCAGTTAACACCTCAGGAGGAAGGCATTATTATTGAATTGCATGCTTTATGGGGTAACAAGTGGTCTACAATTGCTAGATACTTGCCTGGGAGAACAGACAATGAGATAAAGAACTACTGGAGAACTCATTTCAAAAAGAAAGAGAAGTGCACCGAGAAACAGCAAAAACGAAAAGCTCAAATCCTCATAGAGAAGCAACAACAACAACAACAAGATATAAAGGATGATCAAGAAAACAAGAAAATAAAATCAGCCAATACTAGTACTTCACCACAGGGACATAGTGAAGCCTTGACCTGCAGCAGCGAATTACGAAATAATAATATGATCACTGATGAGCTGCAGCAGCTGGCACAGCCTACTCAAGAGATGAATGTTGTTTTTGCATGCCCGAATATGGAGGAGGCTCAATGCTTACCTGCACTAGTGTCGATGAACCAATTAGGCGGTATTACTAGTGCTGTTGAATCTACTATATGGTCATCGGAAAACACTGCCATGATTAACATTGAATCAGAAGACGATCAAGGGTTTTGGGGACAACTCTGGAACCTAGACGATGATCATGGTCATGTACAAGCTAACCGTTGCCGGAACAGTTTAGCCTTGCAGCAGAATCAAGCAATTACAGCTACATCTTCTGGAGCCATACGCAATGAAGCTACTAGGGCTAACAATTTTTCCTGGGGAGAGGATATTCGTTCCTATAATAAGTACTTCTATAGCGGATCAGGCTACACATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

320

Amino Acids

36.32

Weight (kDa)

7.61

Isoelectric Point (pI)

58.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	18 - 65	2.1e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	21 - 79	2.6e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	71 - 115	4e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	75 - 126	1.5e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30210
fragaria_vesca	FvH4_6g46440
malus_domestica	MD09G1073600.v1.1 MD17G1065100.v1.1
prunus_persica	Prupe.3G249600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0164981
rosa_laevigata	RLG00000021503
rosa_roxburghii	Rroxscaffold_2G00086140
rosa_rugosa	Rorug02G0511900 Rorug02G0512000
rosa_samantha	Rh2AG580100 Rh2BG591200 Rh2CG561700 Rh2DG601500
rosa_wichuraiana	Rw2G048150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	521, 643
AccI	GTMKAC	1 cut(s)	281
AciI	CCGC	4 cut(s)	27, 35, 663, 942
AclWI	GGATC	1 cut(s)	952
AcuI	CTGAAG	1 cut(s)	227
AfaI	GTAC	3 cut(s)	481, 792, 932
AfiI	CCNNNNNNNGG	1 cut(s)	613
AgsI	TTSAA	5 cut(s)	151, 251, 349, 683, 728
AhlI	ACTAGT	3 cut(s)	476, 640, 671
AjnI	CCWGG	3 cut(s)	199, 301, 899
AluBI	AGCT	7 cut(s)	82, 392, 556, 565, 797, 848, 878
AluI	AGCT	7 cut(s)	82, 392, 556, 565, 797, 848, 878
Alw21I	GWGCWC	2 cut(s)	143, 368
Alw44I	GTGCAC	2 cut(s)	139, 364
AlwI	GGATC	1 cut(s)	952
AlwNI	CAGNNNCTG	1 cut(s)	565
AoxI	GGCC	2 cut(s)	197, 214
ApaLI	GTGCAC	2 cut(s)	139, 364
ApeKI	GCWGC	7 cut(s)	82, 516, 519, 556, 559, 562, 826
AspS9I	GGNCC	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	196, 477
AvaII	GGWCC	1 cut(s)	56
AxyI	CCTNAGG	1 cut(s)	228
BaeGI	GKGCMC	2 cut(s)	143, 368
BbsI	GAAGAC	1 cut(s)	741
Bbv12I	GWGCWC	2 cut(s)	143, 368
BbvI	GCAGC	7 cut(s)	69, 528, 531, 543, 571, 574, 838
BccI	CCATC	3 cut(s)	15, 114, 174
BcgI	CGANNNNNNTGC	2 cut(s)	627, 661
BciT130I	CCWGG	3 cut(s)	201, 303, 901
BclI	TGATCA	3 cut(s)	442, 543, 778
BcuI	ACTAGT	3 cut(s)	476, 640, 671
BfaI	CTAG	7 cut(s)	135, 291, 477, 641, 672, 770, 882
BfmI	CTRYAG	3 cut(s)	514, 557, 937
BfuAI	ACCTGC	2 cut(s)	521, 643
BisI	GCNGC	7 cut(s)	83, 517, 520, 557, 560, 563, 827
BlsI	GCNGC	7 cut(s)	84, 518, 521, 558, 561, 564, 828
BmcAI	AGTACT	2 cut(s)	481, 932
Bme1390I	CCNGG	3 cut(s)	201, 303, 901
Bme18I	GGWCC	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	2 cut(s)	767, 862
BmrFI	CCNGG	3 cut(s)	201, 303, 901
BpiI	GAAGAC	1 cut(s)	741
BpmI	CTGGAG	2 cut(s)	355, 879
BpuEI	CTTGAG	1 cut(s)	564
BsaJI	CCNNGG	3 cut(s)	59, 302, 900
BsaXI	ACNNNNNCTCC	2 cut(s)	40, 70
Bsc4I	CCNNNNNNNGG	1 cut(s)	613
Bse1I	ACTGG	2 cut(s)	217, 338
Bse21I	CCTNAGG	1 cut(s)	228
Bse3DI	GCAATG	1 cut(s)	877
BseBI	CCWGG	3 cut(s)	201, 303, 901
BseDI	CCNNGG	3 cut(s)	59, 302, 900
BseGI	GGATG	2 cut(s)	26, 445
BseLI	CCNNNNNNNGG	1 cut(s)	613
BseMI	GCAATG	1 cut(s)	877
BseMII	CTCAG	2 cut(s)	100, 242
BseNI	ACTGG	2 cut(s)	217, 338
BseRI	GAGGAG	1 cut(s)	632
BseSI	GKGCMC	2 cut(s)	143, 368
BseXI	GCAGC	7 cut(s)	69, 528, 531, 543, 571, 574, 838
BsgI	GTGCAG	1 cut(s)	621
BshFI	GGCC	2 cut(s)	199, 216
BsiHKAI	GWGCWC	2 cut(s)	143, 368
BsiSI	CCGG	1 cut(s)	808
BslFI	GGGAC	2 cut(s)	507, 768
BslI	CCNNNNNNNGG	1 cut(s)	613
BsmFI	GGGAC	2 cut(s)	507, 768
BsnI	GGCC	2 cut(s)	199, 216
Bsp1286I	GDGCHC	2 cut(s)	143, 368
Bsp1407I	TGTACA	1 cut(s)	790
Bsp143I	GATC	5 cut(s)	442, 543, 739, 778, 944
BspACI	CCGC	4 cut(s)	27, 35, 663, 942
BspANI	GGCC	2 cut(s)	199, 216
BspCNI	CTCAG	2 cut(s)	99, 241
BspLI	GGNNCC	2 cut(s)	767, 862
BspMAI	CTGCAG	2 cut(s)	518, 561
BspMI	ACCTGC	2 cut(s)	521, 643
BspPI	GGATC	1 cut(s)	952
BsrDI	GCAATG	1 cut(s)	877
BsrGI	TGTACA	1 cut(s)	790
BsrI	ACTGG	2 cut(s)	217, 338
BssECI	CCNNGG	3 cut(s)	59, 302, 900
BssMI	GATC	5 cut(s)	442, 543, 739, 778, 944
BssT1I	CCWWGG	1 cut(s)	59
Bst2UI	CCWGG	3 cut(s)	201, 303, 901
Bst4CI	ACNGT	2 cut(s)	803, 815
Bst6I	CTCTTC	2 cut(s)	66, 203
BstAUI	TGTACA	1 cut(s)	790
BstC8I	GCNNGC	3 cut(s)	258, 567, 604
BstDEI	CTNAG	4 cut(s)	86, 176, 194, 228
BstF5I	GGATG	2 cut(s)	26, 445
BstKTI	GATC	5 cut(s)	445, 546, 742, 781, 947
BstMBI	GATC	5 cut(s)	442, 543, 739, 778, 944
BstMWI	GCNNNNNNNGC	6 cut(s)	91, 562, 571, 845, 884, 948
BstNI	CCWGG	3 cut(s)	201, 303, 901
BstNSI	RCATGY	3 cut(s)	98, 260, 606
BstSCI	CCNGG	3 cut(s)	199, 301, 899
BstSFI	CTRYAG	3 cut(s)	514, 557, 937
BstSLI	GKGCMC	2 cut(s)	143, 368
BstV1I	GCAGC	7 cut(s)	69, 528, 531, 543, 571, 574, 838
BstV2I	GAAGAC	1 cut(s)	741
Bsu36I	CCTNAGG	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	199, 216
BtsCI	GGATG	2 cut(s)	26, 445
BtsI	GCAGTG	1 cut(s)	708
BtsIMutI	CAGTG	3 cut(s)	94, 546, 708
BveI	ACCTGC	2 cut(s)	521, 643
Cac8I	GCNNGC	3 cut(s)	258, 567, 604
CaiI	CAGNNNCTG	1 cut(s)	565
Cfr13I	GGNCC	1 cut(s)	56
Csp6I	GTAC	3 cut(s)	480, 791, 931
CviAII	CATG	7 cut(s)	95, 107, 257, 603, 715, 782, 788
CviQI	GTAC	3 cut(s)	480, 791, 931
DdeI	CTNAG	4 cut(s)	86, 176, 194, 228
DpnI	GATC	5 cut(s)	444, 545, 741, 780, 946
DpnII	GATC	5 cut(s)	442, 543, 739, 778, 944
Eam1104I	CTCTTC	2 cut(s)	66, 203
EarI	CTCTTC	2 cut(s)	66, 203
Eco130I	CCWWGG	1 cut(s)	59
Eco147I	AGGCCT	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	227
Eco81I	CCTNAGG	1 cut(s)	228
EcoO109I	RGGNCCY	1 cut(s)	56
EcoRII	CCWGG	3 cut(s)	199, 301, 899
EcoT14I	CCWWGG	1 cut(s)	59
ErhI	CCWWGG	1 cut(s)	59
FaeI	CATG	7 cut(s)	98, 110, 260, 606, 718, 785, 791
FaqI	GGGAC	2 cut(s)	507, 768
FatI	CATG	7 cut(s)	94, 106, 256, 602, 714, 781, 787
FbaI	TGATCA	3 cut(s)	442, 543, 778
FblI	GTMKAC	1 cut(s)	281
Fnu4HI	GCNGC	7 cut(s)	83, 517, 520, 557, 560, 563, 827
FokI	GGATG	2 cut(s)	33, 452
Fsp4HI	GCNGC	7 cut(s)	83, 517, 520, 557, 560, 563, 827
FspBI	CTAG	7 cut(s)	135, 291, 477, 641, 672, 770, 882
GluI	GCNGC	7 cut(s)	83, 517, 520, 557, 560, 563, 827
GsuI	CTGGAG	2 cut(s)	355, 879
HaeIII	GGCC	2 cut(s)	199, 216
HapII	CCGG	1 cut(s)	808
Hin1II	CATG	7 cut(s)	98, 110, 260, 606, 718, 785, 791
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HinfI	GANTC	4 cut(s)	64, 683, 728, 832
HpaI	GTTAAC	1 cut(s)	222
HpaII	CCGG	1 cut(s)	808
HphI	GGTGA	2 cut(s)	196, 477
Hpy166II	GTNNAC	4 cut(s)	141, 222, 282, 366
Hpy188I	TCNGA	2 cut(s)	703, 733
Hpy188III	TCNNGA	6 cut(s)	68, 230, 446, 581, 763, 858
Hpy8I	GTNNAC	4 cut(s)	141, 222, 282, 366
HpyAV	CCTTC	1 cut(s)	230
HpyCH4III	ACNGT	2 cut(s)	803, 815
HpyF10VI	GCNNNNNNNGC	6 cut(s)	91, 562, 571, 845, 884, 948
HpyF3I	CTNAG	4 cut(s)	86, 176, 194, 228
Hsp92II	CATG	7 cut(s)	98, 110, 260, 606, 718, 785, 791
Ksp22I	TGATCA	3 cut(s)	442, 543, 778
KspAI	GTTAAC	1 cut(s)	222
Kzo9I	GATC	5 cut(s)	442, 543, 739, 778, 944
LmnI	GCTCC	1 cut(s)	860
Lsp1109I	GCAGC	7 cut(s)	69, 528, 531, 543, 571, 574, 838
MaeI	CTAG	7 cut(s)	135, 291, 477, 641, 672, 770, 882
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	5 cut(s)	444, 545, 741, 780, 946
MboI	GATC	5 cut(s)	442, 543, 739, 778, 944
MboII	GAAGA	5 cut(s)	83, 129, 220, 746, 846
MfeI	CAATTG	1 cut(s)	285
MhlI	GDGCHC	2 cut(s)	143, 368
MluCI	AATT	8 cut(s)	100, 187, 251, 285, 524, 656, 840, 892
MlyI	GAGTC	1 cut(s)	58
MseI	TTAA	2 cut(s)	221, 720
MslI	CAYNNNNRTG	2 cut(s)	713, 786
MspA1I	CMGCKG	1 cut(s)	565
MspI	CCGG	1 cut(s)	808
MspR9I	CCNGG	3 cut(s)	201, 303, 901
MunI	CAATTG	1 cut(s)	285
MvaI	CCWGG	3 cut(s)	201, 303, 901
MwoI	GCNNNNNNNGC	6 cut(s)	91, 562, 571, 845, 884, 948
NdeII	GATC	5 cut(s)	442, 543, 739, 778, 944
NlaIII	CATG	7 cut(s)	98, 110, 260, 606, 718, 785, 791
NlaIV	GGNNCC	2 cut(s)	767, 862
NspI	RCATGY	3 cut(s)	98, 260, 606
PaeI	GCATGC	2 cut(s)	260, 606
PceI	AGGCCT	1 cut(s)	199
PfeI	GAWTC	3 cut(s)	683, 728, 832
PkrI	GCNGC	7 cut(s)	84, 518, 521, 558, 561, 564, 828
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
PpuMI	RGGWCCY	1 cut(s)	56
Psp5II	RGGWCCY	1 cut(s)	56
Psp6I	CCWGG	3 cut(s)	199, 301, 899
PspGI	CCWGG	3 cut(s)	199, 301, 899
PspN4I	GGNNCC	2 cut(s)	767, 862
PspPI	GGNCC	1 cut(s)	56
PspPPI	RGGWCCY	1 cut(s)	56
PstI	CTGCAG	2 cut(s)	518, 561
PstNI	CAGNNNCTG	1 cut(s)	565
PvuII	CAGCTG	1 cut(s)	565
RsaI	GTAC	3 cut(s)	481, 792, 932
RsaNI	GTAC	3 cut(s)	480, 791, 931
RseI	CAYNNNNRTG	2 cut(s)	713, 786
SaqAI	TTAA	2 cut(s)	221, 720
SatI	GCNGC	7 cut(s)	83, 517, 520, 557, 560, 563, 827
Sau3AI	GATC	5 cut(s)	442, 543, 739, 778, 944
Sau96I	GGNCC	1 cut(s)	56
ScaI	AGTACT	2 cut(s)	481, 932
SchI	GAGTC	1 cut(s)	58
ScrFI	CCNGG	3 cut(s)	201, 303, 901
SduI	GDGCHC	2 cut(s)	143, 368
SfcI	CTRYAG	3 cut(s)	514, 557, 937
SinI	GGWCC	1 cut(s)	56
SmiMI	CAYNNNNRTG	2 cut(s)	713, 786
SmlI	CTYRAG	1 cut(s)	579
SmoI	CTYRAG	1 cut(s)	579
SpeI	ACTAGT	3 cut(s)	476, 640, 671
SphI	GCATGC	2 cut(s)	260, 606
Sse9I	AATT	8 cut(s)	100, 187, 251, 285, 524, 656, 840, 892
SseBI	AGGCCT	1 cut(s)	199
SsiI	CCGC	4 cut(s)	27, 35, 663, 942
SspMI	CTAG	7 cut(s)	135, 291, 477, 641, 672, 770, 882
StuI	AGGCCT	1 cut(s)	199
StyD4I	CCNGG	3 cut(s)	199, 301, 899
StyI	CCWWGG	1 cut(s)	59
TaaI	ACNGT	2 cut(s)	803, 815
TaqI	TCGA	1 cut(s)	647
TasI	AATT	8 cut(s)	100, 187, 251, 285, 524, 656, 840, 892
TatI	WGTACW	3 cut(s)	479, 790, 930
TfiI	GAWTC	3 cut(s)	683, 728, 832
Tru1I	TTAA	2 cut(s)	221, 720
Tru9I	TTAA	2 cut(s)	221, 720
TscAI	CASTG	3 cut(s)	94, 553, 715
TseI	GCWGC	7 cut(s)	82, 516, 519, 556, 559, 562, 826
TspDTI	ATGAA	3 cut(s)	602, 665, 888
TspRI	CASTG	3 cut(s)	94, 553, 715
VneI	GTGCAC	2 cut(s)	139, 364
VpaK11BI	GGWCC	1 cut(s)	56
XceI	RCATGY	3 cut(s)	98, 260, 606
XmiI	GTMKAC	1 cut(s)	281
XspI	CTAG	7 cut(s)	135, 291, 477, 641, 672, 770, 882
ZrmI	AGTACT	2 cut(s)	481, 932

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.