Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0015861

Physical Location & Seq

Genomic Coordinates Forward (+)

5264978 .. 5265983

Gene Structure 1006 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1065100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGTAGCTATGATGGGTTGGGGTGGTGTTGGAGAACAAGGATGGAGGAAAGGTCCTTGGACTCCTGAGGAGGATAAGCTGCTCAGTGAATATGTCACCTTGCATGGAGAGGGAAGATGGAGTTCTGTGTCTAGGTCTACGGGTCTGAACAGGAATGGGAAAAGTTGCAGACTCAGATGGGTGAATTATATGAGGCCAGGACTGAAGAGAGGGCATATAACACCTCAGGAGGAAGGCATCATCATTGAATTGCATGCTTTATGGGGTAACAAATGGTCCACCATTGCAAGATACTTGCCAGGGAGAACCGACAATGAGATAAAAAACTTCTGGAGAACCCATTTCAAAAAGAAAGAGAAATGCACTCAGAAGCAAGAGAAACGAAAAGCAGAGATTCTAAAAGCAAAACAACAACAATTAGAGGAAGATCAAAACACGAAAGCAAGAGCCACTGCACCACACGATCATTGGGAAGCCTGCAGCCAAGGAACAATAAGCAATATGAATAATATTGATATCCATGAAACACAAGCAACATGGCAAGAAAATATGGAGGAAGACAAATATTGCTTGCCAAAATTGATGCACCAAGCAAGTGTGGAATTTTGGTCAGATTTATTAGGAGAAGAAGGGTTTTATAAGCTCTGGAACTTAGACGACGTAAGCGGTCGAATGGATCCGCAGCATTGCAGCAACACACAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

236

Amino Acids

27.36

Weight (kDa)

7.69

Isoelectric Point (pI)

55.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	17 - 64	5.1e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	20 - 78	1.6e-10	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	70 - 114	2.8e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	74 - 127	4.4e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0015861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30210
fragaria_vesca	FvH4_6g46440
malus_domestica	MD09G1073600.v1.1 MD17G1065100.v1.1
prunus_persica	Prupe.3G249600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0164981
rosa_laevigata	RLG00000021503
rosa_roxburghii	Rroxscaffold_2G00086140
rosa_rugosa	Rorug02G0511900 Rorug02G0512000
rosa_samantha	Rh2AG580100 Rh2BG591200 Rh2CG561700 Rh2DG601500
rosa_wichuraiana	Rw2G048150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	639
AccI	GTMKAC	1 cut(s)	137
AciI	CCGC	2 cut(s)	666, 680
AclWI	GGATC	2 cut(s)	671, 684
AcsI	RAATTY	1 cut(s)	602
AcuI	CTGAAG	1 cut(s)	224
AgsI	TTSAA	2 cut(s)	248, 346
AjnI	CCWGG	2 cut(s)	196, 298
AluBI	AGCT	4 cut(s)	8, 79, 643, 704
AluI	AGCT	4 cut(s)	8, 79, 643, 704
AlwI	GGATC	2 cut(s)	671, 684
AoxI	GGCC	1 cut(s)	194
ApeKI	GCWGC	4 cut(s)	79, 480, 682, 690
ApoI	RAATTY	1 cut(s)	602
AspS9I	GGNCC	2 cut(s)	53, 276
AsuHPI	GGTGA	2 cut(s)	88, 193
AvaII	GGWCC	2 cut(s)	53, 276
AxyI	CCTNAGG	2 cut(s)	66, 225
BamHI	GGATCC	1 cut(s)	676
BbsI	GAAGAC	1 cut(s)	564
BbvI	GCAGC	4 cut(s)	66, 492, 694, 702
BccI	CCATC	4 cut(s)	7, 36, 111, 171
BciT130I	CCWGG	2 cut(s)	198, 300
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	478
BisI	GCNGC	4 cut(s)	80, 481, 683, 691
BlsI	GCNGC	4 cut(s)	81, 482, 684, 692
Bme1390I	CCNGG	2 cut(s)	198, 300
Bme18I	GGWCC	2 cut(s)	53, 276
BmgT120I	GGNCC	2 cut(s)	53, 276
BmiI	GGNNCC	1 cut(s)	678
BmrFI	CCNGG	2 cut(s)	198, 300
BmsI	GCATC	2 cut(s)	246, 573
BpiI	GAAGAC	1 cut(s)	564
BpmI	CTGGAG	1 cut(s)	352
BsaJI	CCNNGG	3 cut(s)	56, 299, 484
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bse21I	CCTNAGG	2 cut(s)	66, 225
Bse3DI	GCAATG	2 cut(s)	282, 685
BseBI	CCWGG	2 cut(s)	198, 300
BseDI	CCNNGG	3 cut(s)	56, 299, 484
BseGI	GGATG	1 cut(s)	47
BseMI	GCAATG	2 cut(s)	282, 685
BseMII	CTCAG	5 cut(s)	57, 97, 187, 239, 380
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	4 cut(s)	66, 492, 694, 702
BsgI	GTGCAG	1 cut(s)	438
Bsh1285I	CGRYCG	1 cut(s)	670
BshFI	GGCC	1 cut(s)	196
BsiEI	CGRYCG	1 cut(s)	670
BsnI	GGCC	1 cut(s)	196
Bsp143I	GATC	3 cut(s)	427, 463, 676
BspACI	CCGC	2 cut(s)	666, 680
BspANI	GGCC	1 cut(s)	196
BspCNI	CTCAG	5 cut(s)	58, 96, 186, 238, 379
BspLI	GGNNCC	1 cut(s)	678
BspMAI	CTGCAG	1 cut(s)	482
BspPI	GGATC	2 cut(s)	671, 684
BsrDI	GCAATG	2 cut(s)	282, 685
BssECI	CCNNGG	3 cut(s)	56, 299, 484
BssMI	GATC	3 cut(s)	427, 463, 676
BssT1I	CCWWGG	2 cut(s)	56, 484
Bst2UI	CCWGG	2 cut(s)	198, 300
Bst6I	CTCTTC	1 cut(s)	200
BstC8I	GCNNGC	3 cut(s)	255, 478, 572
BstDEI	CTNAG	6 cut(s)	66, 83, 173, 225, 366, 652
BstF5I	GGATG	1 cut(s)	47
BstKTI	GATC	3 cut(s)	430, 466, 679
BstMBI	GATC	3 cut(s)	427, 463, 676
BstMCI	CGRYCG	1 cut(s)	670
BstNI	CCWGG	2 cut(s)	198, 300
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	2 cut(s)	196, 298
BstSFI	CTRYAG	1 cut(s)	478
BstV1I	GCAGC	4 cut(s)	66, 492, 694, 702
BstV2I	GAAGAC	1 cut(s)	564
BstX2I	RGATCY	1 cut(s)	676
BstYI	RGATCY	1 cut(s)	676
Bsu36I	CCTNAGG	2 cut(s)	66, 225
BsuRI	GGCC	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	47
BtsI	GCAGTG	1 cut(s)	450
BtsIMutI	CAGTG	2 cut(s)	91, 450
Cac8I	GCNNGC	3 cut(s)	255, 478, 572
Cfr13I	GGNCC	2 cut(s)	53, 276
CviAII	CATG	4 cut(s)	104, 254, 521, 537
CviJI	RGCY	8 cut(s)	8, 79, 196, 449, 476, 483, 643, 704
CviKI_1	RGCY	8 cut(s)	8, 79, 196, 449, 476, 483, 643, 704
DdeI	CTNAG	6 cut(s)	66, 83, 173, 225, 366, 652
DpnI	GATC	3 cut(s)	429, 465, 678
DpnII	GATC	3 cut(s)	427, 463, 676
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Eco130I	CCWWGG	2 cut(s)	56, 484
Eco32I	GATATC	1 cut(s)	517
Eco47I	GGWCC	2 cut(s)	53, 276
Eco57I	CTGAAG	1 cut(s)	224
Eco81I	CCTNAGG	2 cut(s)	66, 225
EcoO109I	RGGNCCY	1 cut(s)	53
EcoRII	CCWGG	2 cut(s)	196, 298
EcoRV	GATATC	1 cut(s)	517
EcoT14I	CCWWGG	2 cut(s)	56, 484
ErhI	CCWWGG	2 cut(s)	56, 484
FaeI	CATG	4 cut(s)	107, 257, 524, 540
FatI	CATG	4 cut(s)	103, 253, 520, 536
FblI	GTMKAC	1 cut(s)	137
Fnu4HI	GCNGC	4 cut(s)	80, 481, 683, 691
FokI	GGATG	1 cut(s)	54
Fsp4HI	GCNGC	4 cut(s)	80, 481, 683, 691
FspBI	CTAG	1 cut(s)	132
GluI	GCNGC	4 cut(s)	80, 481, 683, 691
GsuI	CTGGAG	1 cut(s)	352
HaeIII	GGCC	1 cut(s)	196
Hin1II	CATG	4 cut(s)	107, 257, 524, 540
HindIII	AAGCTT	1 cut(s)	702
HinfI	GANTC	3 cut(s)	61, 171, 394
HphI	GGTGA	2 cut(s)	88, 193
Hpy166II	GTNNAC	2 cut(s)	138, 279
Hpy188I	TCNGA	4 cut(s)	147, 176, 369, 613
Hpy188III	TCNNGA	4 cut(s)	65, 227, 331, 646
Hpy8I	GTNNAC	2 cut(s)	138, 279
Hpy99I	CGWCG	1 cut(s)	662
HpyAV	CCTTC	2 cut(s)	227, 623
HpyCH4IV	ACGT	1 cut(s)	660
HpyCH4V	TGCA	9 cut(s)	103, 168, 253, 287, 363, 455, 480, 586, 690
HpyF3I	CTNAG	6 cut(s)	66, 83, 173, 225, 366, 652
HpySE526I	ACGT	1 cut(s)	660
Hsp92II	CATG	4 cut(s)	107, 257, 524, 540
Kzo9I	GATC	3 cut(s)	427, 463, 676
Lsp1109I	GCAGC	4 cut(s)	66, 492, 694, 702
LweI	GCATC	2 cut(s)	246, 573
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	1 cut(s)	660
MaeIII	GTNAC	2 cut(s)	94, 266
MalI	GATC	3 cut(s)	429, 465, 678
MboI	GATC	3 cut(s)	427, 463, 676
MboII	GAAGA	5 cut(s)	126, 217, 437, 569, 638
MflI	RGATCY	1 cut(s)	676
MluCI	AATT	5 cut(s)	184, 248, 416, 578, 602
MlyI	GAGTC	2 cut(s)	55, 165
MmeI	TCCRAC	1 cut(s)	10
MseI	TTAA	1 cut(s)	706
MspR9I	CCNGG	2 cut(s)	198, 300
MvaI	CCWGG	2 cut(s)	198, 300
NdeII	GATC	3 cut(s)	427, 463, 676
NlaIII	CATG	4 cut(s)	107, 257, 524, 540
NlaIV	GGNNCC	1 cut(s)	678
NmuCI	GTSAC	1 cut(s)	94
NspI	RCATGY	1 cut(s)	257
PaeI	GCATGC	1 cut(s)	257
PfeI	GAWTC	1 cut(s)	394
PkrI	GCNGC	4 cut(s)	81, 482, 684, 692
PleI	GAGTC	2 cut(s)	55, 165
PpsI	GAGTC	2 cut(s)	55, 165
PpuMI	RGGWCCY	1 cut(s)	53
PsiI	TTATAA	1 cut(s)	639
Psp5II	RGGWCCY	1 cut(s)	53
Psp6I	CCWGG	2 cut(s)	196, 298
PspGI	CCWGG	2 cut(s)	196, 298
PspN4I	GGNNCC	1 cut(s)	678
PspPI	GGNCC	2 cut(s)	53, 276
PspPPI	RGGWCCY	1 cut(s)	53
PstI	CTGCAG	1 cut(s)	482
PsuI	RGATCY	1 cut(s)	676
SaqAI	TTAA	1 cut(s)	706
SatI	GCNGC	4 cut(s)	80, 481, 683, 691
Sau3AI	GATC	3 cut(s)	427, 463, 676
Sau96I	GGNCC	2 cut(s)	53, 276
SchI	GAGTC	2 cut(s)	55, 165
ScrFI	CCNGG	2 cut(s)	198, 300
SetI	ASST	9 cut(s)	10, 55, 81, 101, 137, 226, 645, 663, 706
SfaNI	GCATC	2 cut(s)	246, 573
SfcI	CTRYAG	1 cut(s)	478
SinI	GGWCC	2 cut(s)	53, 276
SphI	GCATGC	1 cut(s)	257
Sse9I	AATT	5 cut(s)	184, 248, 416, 578, 602
SsiI	CCGC	2 cut(s)	666, 680
SspI	AATATT	2 cut(s)	511, 566
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	2 cut(s)	196, 298
StyI	CCWWGG	2 cut(s)	56, 484
TaiI	ACGT	1 cut(s)	663
TaqI	TCGA	1 cut(s)	670
TasI	AATT	5 cut(s)	184, 248, 416, 578, 602
TfiI	GAWTC	1 cut(s)	394
Tru1I	TTAA	1 cut(s)	706
Tru9I	TTAA	1 cut(s)	706
TscAI	CASTG	2 cut(s)	91, 457
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	4 cut(s)	79, 480, 682, 690
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	2 cut(s)	518, 537
TspRI	CASTG	2 cut(s)	91, 457
VpaK11BI	GGWCC	2 cut(s)	53, 276
XapI	RAATTY	1 cut(s)	602
XceI	RCATGY	1 cut(s)	257
XcmI	CCANNNNNNNNNTGG	1 cut(s)	465
XmiI	GTMKAC	1 cut(s)	137
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.