Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0015861

Physical Location & Seq

Genomic Coordinates Reverse (-)

23974815 .. 23976009

Gene Structure 1195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G249600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGTAACAATGATGGGTTGGGGATTTGCAGAACAACAAGGATGGAGGAAAGGTCCTTGGACACCAGAGGAAGACAAGCTGCTCAATGAATATGTCAACTTATATGGAGAGGGAAGATGGAGTTGTGTGGCTAAGTGTGCAGGTTTGAACAGGAGTGGCAAAAGTTGCAGACTTAGATGGGTGAATTATCTTAGGCCTGGATTAAAGAGAGGCCATATAACACCTCAGGAGGAAGGCATCATTATTGAATTGCATGCTTTATGGGGTAACAAATGGTCTACCATTGCTAGATACTTGCCAGGAAGAACAGACAATGAGATAAAGAACTTCTGGAGAACTCATTTCAAAAAGAAAGAGAAATGCACTCAAAAGCAAGAGAAACGAAAAGCTCAAATTCTTCTAGCAAAACAACAACAACAACTGCAGGAAGATCAAAACCTGAAAATACGAGCCACGCCACAATCGGAAGCAAGCCAAGGAGAAAACATTAACATGACTACTGATCATGAGGCACAAGCAAGGCAAGAGAATAATATGGATCTTATTAGCAGCAGCTACCCCAACTTGGAGGGGGACCAATATTGCTTGCCTGCGTTGATGAACCAAGGAAGTGTAGGGTCTTGGGCGGATATATTAGGAGAAGAAGGCTTATATATGGGGCGCCTCTGGAACTTAGATGATGAGCATGTAAACGGTCGAATGGATCGAAACACAAGCTTAAGCCAGTGCAACAAATCAGCCATGCAGAATCAAGCAGCAGTCACAGCTTTCTCTTCTGGAGGGGATCACTCTTACACATTCTATAATGGAGGCTACATCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

275

Amino Acids

31.38

Weight (kDa)

8.15

Isoelectric Point (pI)

51.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30210
fragaria_vesca	FvH4_6g46440
malus_domestica	MD09G1073600.v1.1 MD17G1065100.v1.1
prunus_persica	Prupe.3G249600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0164981
rosa_laevigata	RLG00000021503
rosa_roxburghii	Rroxscaffold_2G00086140
rosa_rugosa	Rorug02G0511900 Rorug02G0512000
rosa_samantha	Rh2AG580100 Rh2BG591200 Rh2CG561700 Rh2DG601500
rosa_wichuraiana	Rw2G048150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	131
AccB1I	GGYRCC	1 cut(s)	660
AccI	GTMKAC	1 cut(s)	278
AciI	CCGC	1 cut(s)	626
AclWI	GGATC	3 cut(s)	546, 711, 792
AcsI	RAATTY	1 cut(s)	393
AcyI	GRCGYC	1 cut(s)	661
AfiI	CCNNNNNNNGG	1 cut(s)	565
AflII	CTTAAG	1 cut(s)	718
AgsI	TTSAA	3 cut(s)	148, 248, 346
AjnI	CCWGG	2 cut(s)	196, 298
AluBI	AGCT	5 cut(s)	79, 389, 555, 717, 767
AluI	AGCT	5 cut(s)	79, 389, 555, 717, 767
AlwI	GGATC	3 cut(s)	546, 711, 792
AoxI	GGCC	2 cut(s)	194, 211
ApeKI	GCWGC	4 cut(s)	79, 549, 552, 755
ApoI	RAATTY	1 cut(s)	393
AspLEI	GCGC	1 cut(s)	663
AspS9I	GGNCC	2 cut(s)	53, 574
AsuHPI	GGTGA	1 cut(s)	193
AvaII	GGWCC	2 cut(s)	53, 574
AxyI	CCTNAGG	1 cut(s)	225
BanI	GGYRCC	1 cut(s)	660
BbsI	GAAGAC	1 cut(s)	78
BbvI	GCAGC	4 cut(s)	66, 561, 564, 767
BccI	CCATC	4 cut(s)	7, 36, 111, 171
BciT130I	CCWGG	2 cut(s)	198, 300
BclI	TGATCA	1 cut(s)	502
BfaI	CTAG	2 cut(s)	288, 401
BfmI	CTRYAG	1 cut(s)	422
BfoI	RGCGCY	1 cut(s)	664
BfrI	CTTAAG	1 cut(s)	718
BfuAI	ACCTGC	1 cut(s)	131
BisI	GCNGC	4 cut(s)	80, 550, 553, 756
BlsI	GCNGC	4 cut(s)	81, 551, 554, 757
Bme1390I	CCNGG	2 cut(s)	198, 300
Bme18I	GGWCC	2 cut(s)	53, 574
BmgT120I	GGNCC	2 cut(s)	53, 574
BmiI	GGNNCC	2 cut(s)	575, 662
BmrFI	CCNGG	2 cut(s)	198, 300
BmsI	GCATC	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	78
BpmI	CTGGAG	2 cut(s)	352, 798
BsaHI	GRCGYC	1 cut(s)	661
BsaJI	CCNNGG	3 cut(s)	56, 475, 604
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	1 cut(s)	565
Bse1I	ACTGG	1 cut(s)	724
Bse21I	CCTNAGG	1 cut(s)	225
Bse3DI	GCAATG	1 cut(s)	282
BseBI	CCWGG	2 cut(s)	198, 300
BseDI	CCNNGG	3 cut(s)	56, 475, 604
BseGI	GGATG	1 cut(s)	47
BseLI	CCNNNNNNNGG	1 cut(s)	565
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	239
BseNI	ACTGG	1 cut(s)	724
BseXI	GCAGC	4 cut(s)	66, 561, 564, 767
BsgI	GTGCAG	1 cut(s)	159
Bsh1285I	CGRYCG	1 cut(s)	697
BshFI	GGCC	2 cut(s)	196, 213
BshNI	GGYRCC	1 cut(s)	660
BsiEI	CGRYCG	1 cut(s)	697
BslFI	GGGAC	1 cut(s)	587
BslI	CCNNNNNNNGG	1 cut(s)	565
BsmFI	GGGAC	1 cut(s)	587
BsnI	GGCC	2 cut(s)	196, 213
Bsp143I	GATC	5 cut(s)	430, 502, 538, 703, 784
BspACI	CCGC	1 cut(s)	626
BspANI	GGCC	2 cut(s)	196, 213
BspCNI	CTCAG	1 cut(s)	238
BspHI	TCATGA	1 cut(s)	505
BspLI	GGNNCC	2 cut(s)	575, 662
BspMAI	CTGCAG	1 cut(s)	426
BspMI	ACCTGC	1 cut(s)	131
BspPI	GGATC	3 cut(s)	546, 711, 792
BspT107I	GGYRCC	1 cut(s)	660
BspTI	CTTAAG	1 cut(s)	718
BsrDI	GCAATG	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	724
BssECI	CCNNGG	3 cut(s)	56, 475, 604
BssMI	GATC	5 cut(s)	430, 502, 538, 703, 784
BssNI	GRCGYC	1 cut(s)	661
BssT1I	CCWWGG	3 cut(s)	56, 475, 604
Bst2UI	CCWGG	2 cut(s)	198, 300
Bst4CI	ACNGT	1 cut(s)	695
Bst6I	CTCTTC	1 cut(s)	778
BstACI	GRCGYC	1 cut(s)	661
BstAFI	CTTAAG	1 cut(s)	718
BstAPI	GCANNNNNTGC	1 cut(s)	165
BstC8I	GCNNGC	4 cut(s)	255, 472, 587, 591
BstDEI	CTNAG	5 cut(s)	132, 173, 191, 225, 673
BstF5I	GGATG	1 cut(s)	47
BstH2I	RGCGCY	1 cut(s)	664
BstHHI	GCGC	1 cut(s)	663
BstKTI	GATC	5 cut(s)	433, 505, 541, 706, 787
BstMBI	GATC	5 cut(s)	430, 502, 538, 703, 784
BstMCI	CGRYCG	1 cut(s)	697
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 165, 764
BstNI	CCWGG	2 cut(s)	198, 300
BstNSI	RCATGY	2 cut(s)	257, 689
BstSCI	CCNGG	2 cut(s)	196, 298
BstSFI	CTRYAG	1 cut(s)	422
BstV1I	GCAGC	4 cut(s)	66, 561, 564, 767
BstV2I	GAAGAC	1 cut(s)	78
BstX2I	RGATCY	1 cut(s)	538
BstYI	RGATCY	1 cut(s)	538
Bsu36I	CCTNAGG	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	196, 213
BtsCI	GGATG	1 cut(s)	47
BtsIMutI	CAGTG	1 cut(s)	731
BveI	ACCTGC	1 cut(s)	131
Cac8I	GCNNGC	4 cut(s)	255, 472, 587, 591
CciI	TCATGA	1 cut(s)	505
CfoI	GCGC	1 cut(s)	663
Cfr13I	GGNCC	2 cut(s)	53, 574
CviAII	CATG	5 cut(s)	254, 493, 506, 686, 742
DdeI	CTNAG	5 cut(s)	132, 173, 191, 225, 673
DinI	GGCGCC	1 cut(s)	662
DpnI	GATC	5 cut(s)	432, 504, 540, 705, 786
DpnII	GATC	5 cut(s)	430, 502, 538, 703, 784
Eam1104I	CTCTTC	1 cut(s)	778
EarI	CTCTTC	1 cut(s)	778
EciI	GGCGGA	1 cut(s)	641
Eco130I	CCWWGG	3 cut(s)	56, 475, 604
Eco147I	AGGCCT	1 cut(s)	196
Eco47I	GGWCC	2 cut(s)	53, 574
Eco81I	CCTNAGG	1 cut(s)	225
EcoO109I	RGGNCCY	1 cut(s)	53
EcoRII	CCWGG	2 cut(s)	196, 298
EcoT14I	CCWWGG	3 cut(s)	56, 475, 604
EgeI	GGCGCC	1 cut(s)	662
EheI	GGCGCC	1 cut(s)	662
ErhI	CCWWGG	3 cut(s)	56, 475, 604
FaeI	CATG	5 cut(s)	257, 496, 509, 689, 745
FaqI	GGGAC	1 cut(s)	587
FatI	CATG	5 cut(s)	253, 492, 505, 685, 741
FbaI	TGATCA	1 cut(s)	502
FblI	GTMKAC	1 cut(s)	278
Fnu4HI	GCNGC	4 cut(s)	80, 550, 553, 756
FokI	GGATG	1 cut(s)	54
Fsp4HI	GCNGC	4 cut(s)	80, 550, 553, 756
FspBI	CTAG	2 cut(s)	288, 401
GlaI	GCGC	1 cut(s)	662
GluI	GCNGC	4 cut(s)	80, 550, 553, 756
GsuI	CTGGAG	2 cut(s)	352, 798
HaeII	RGCGCY	1 cut(s)	664
HaeIII	GGCC	2 cut(s)	196, 213
HhaI	GCGC	1 cut(s)	663
Hin1I	GRCGYC	1 cut(s)	661
Hin1II	CATG	5 cut(s)	257, 496, 509, 689, 745
Hin6I	GCGC	1 cut(s)	661
HinP1I	GCGC	1 cut(s)	661
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	715
HinfI	GANTC	1 cut(s)	748
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	3 cut(s)	97, 279, 691
Hpy188I	TCNGA	1 cut(s)	466
Hpy188III	TCNNGA	5 cut(s)	227, 331, 506, 667, 777
Hpy8I	GTNNAC	3 cut(s)	97, 279, 691
HpyAV	CCTTC	2 cut(s)	227, 638
HpyCH4III	ACNGT	1 cut(s)	695
HpyCH4V	TGCA	8 cut(s)	29, 140, 168, 253, 363, 424, 729, 745
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 165, 764
HpyF3I	CTNAG	5 cut(s)	132, 173, 191, 225, 673
Hsp92I	GRCGYC	1 cut(s)	661
Hsp92II	CATG	5 cut(s)	257, 496, 509, 689, 745
HspAI	GCGC	1 cut(s)	661
KasI	GGCGCC	1 cut(s)	660
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	5 cut(s)	430, 502, 538, 703, 784
Lsp1109I	GCAGC	4 cut(s)	66, 561, 564, 767
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	2 cut(s)	288, 401
MaeIII	GTNAC	3 cut(s)	4, 266, 760
MalI	GATC	5 cut(s)	432, 504, 540, 705, 786
MboI	GATC	5 cut(s)	430, 502, 538, 703, 784
MboII	GAAGA	8 cut(s)	83, 126, 315, 389, 440, 653, 765, 811
MflI	RGATCY	1 cut(s)	538
MluCI	AATT	3 cut(s)	184, 248, 393
Mly113I	GGCGCC	1 cut(s)	661
MseI	TTAA	3 cut(s)	203, 489, 719
MslI	CAYNNNNRTG	1 cut(s)	491
MspCI	CTTAAG	1 cut(s)	718
MspR9I	CCNGG	2 cut(s)	198, 300
MvaI	CCWGG	2 cut(s)	198, 300
MwoI	GCNNNNNNNGC	3 cut(s)	137, 165, 764
NarI	GGCGCC	1 cut(s)	661
NdeII	GATC	5 cut(s)	430, 502, 538, 703, 784
NlaIII	CATG	5 cut(s)	257, 496, 509, 689, 745
NlaIV	GGNNCC	2 cut(s)	575, 662
NmuCI	GTSAC	1 cut(s)	760
NspI	RCATGY	2 cut(s)	257, 689
PaeI	GCATGC	1 cut(s)	257
PagI	TCATGA	1 cut(s)	505
PceI	AGGCCT	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	703
PfeI	GAWTC	1 cut(s)	748
PkrI	GCNGC	4 cut(s)	81, 551, 554, 757
PluTI	GGCGCC	1 cut(s)	664
PpuMI	RGGWCCY	1 cut(s)	53
Psp5II	RGGWCCY	1 cut(s)	53
Psp6I	CCWGG	2 cut(s)	196, 298
PspGI	CCWGG	2 cut(s)	196, 298
PspN4I	GGNNCC	2 cut(s)	575, 662
PspPI	GGNCC	2 cut(s)	53, 574
PspPPI	RGGWCCY	1 cut(s)	53
PstI	CTGCAG	1 cut(s)	426
PsuI	RGATCY	1 cut(s)	538
RseI	CAYNNNNRTG	1 cut(s)	491
SaqAI	TTAA	3 cut(s)	203, 489, 719
SatI	GCNGC	4 cut(s)	80, 550, 553, 756
Sau3AI	GATC	5 cut(s)	430, 502, 538, 703, 784
Sau96I	GGNCC	2 cut(s)	53, 574
ScrFI	CCNGG	2 cut(s)	198, 300
SetI	ASST	9 cut(s)	55, 81, 145, 226, 391, 441, 557, 719, 769
SfaNI	GCATC	1 cut(s)	246
SfcI	CTRYAG	1 cut(s)	422
SfoI	GGCGCC	1 cut(s)	662
SinI	GGWCC	2 cut(s)	53, 574
SmiMI	CAYNNNNRTG	1 cut(s)	491
SmlI	CTYRAG	1 cut(s)	718
SmoI	CTYRAG	1 cut(s)	718
SphI	GCATGC	1 cut(s)	257
Sse9I	AATT	3 cut(s)	184, 248, 393
SseBI	AGGCCT	1 cut(s)	196
SsiI	CCGC	1 cut(s)	626
SspDI	GGCGCC	1 cut(s)	660
SspI	AATATT	1 cut(s)	581
SspMI	CTAG	2 cut(s)	288, 401
StuI	AGGCCT	1 cut(s)	196
StyD4I	CCNGG	2 cut(s)	196, 298
StyI	CCWWGG	3 cut(s)	56, 475, 604
TaaI	ACNGT	1 cut(s)	695
TaqI	TCGA	2 cut(s)	697, 706
TasI	AATT	3 cut(s)	184, 248, 393
TfiI	GAWTC	1 cut(s)	748
Tru1I	TTAA	3 cut(s)	203, 489, 719
Tru9I	TTAA	3 cut(s)	203, 489, 719
TscAI	CASTG	1 cut(s)	731
TseFI	GTSAC	1 cut(s)	760
TseI	GCWGC	4 cut(s)	79, 549, 552, 755
Tsp45I	GTSAC	1 cut(s)	760
TspDTI	ATGAA	2 cut(s)	102, 614
TspRI	CASTG	1 cut(s)	731
Vha464I	CTTAAG	1 cut(s)	718
VpaK11BI	GGWCC	2 cut(s)	53, 574
XapI	RAATTY	1 cut(s)	393
XceI	RCATGY	2 cut(s)	257, 689
XmiI	GTMKAC	1 cut(s)	278
XspI	CTAG	2 cut(s)	288, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.