AT3G43120

auxin-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010995
Physical Location & Seq
Forward (+)
15094048 .. 15095989
1942 bp
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UTR
Exon/CDS
Intron
AT3G43120.1

Sequence Viewer

Length: 483 bp
ATGGATGAAAACAACGCGGCAAAGTTAACCGGGATCAAGCAGATTGTGAGACTAAAGGAGATTCTTCAAAAATGGCAAACTGTCACAATAGGTTCAAAGTCAGATGATGGAGAGTTGGGAGCTAGAAAACACACAGCTATCATTTCACCGGTTATCAACAAGAGGCTATTGGATTTGAAGACTTGTGACTCGGACGAGGAAACTACTTGCCAAAGCCCTGAGCCACCGCCTGATGTCCCTAAAGGATATTTGGCGGTTTATGTTGGACCCGAGCTCCGGAGATTTATCATACCCACAAACTTTCTTAGCCATTCTTTGTTCAAGGTCTTGCTTGAGAAGGCTGAGGAAGAGTATGGATTTGATCACAGCGGTGCGTTAACCATTCCTTGTGAAGTTGAGACTTTCAAGTACTTACTTAAGTGCATTGAGAACCATCCTAAAGATGACACCTCGGCTGAAGATCCAGTAGAAACGGAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

160

Amino Acids

17.97

Weight (kDa)

4.91

Isoelectric Point (pI)

42.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 17 - 142 1.6e-26 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010995)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43120 AT5G20810 AT5G20810
fragaria_vesca FvH4_1g09280 FvH4_1g09280
malus_domestica MD02G1100000.v1.1 MD15G1222900.v1.1
prunus_persica Prupe.7G192900_v2.0.a1
pyrus_communis pycom02g07800 pycom15g19700
rosa_chinensis RchiOBHm_Chr2g0095841
rosa_laevigata RLG00000016599
rosa_multiflora Rmu_sc0000496.1_g000006
rosa_roxburghii Rroxscaffold_2G00146040
rosa_rugosa Rorug02G0053200
rosa_samantha Rh2AG102300 Rh2BG103700 Rh2CG106200 Rh2DG103800
rosa_wichuraiana Rw2G007780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 17
AccIII TCCGGA 1 cut(s) 276
AciI CCGC 4 cut(s) 17, 227, 254, 369
AclWI GGATC 2 cut(s) 41, 455
AcuI CTGAAG 1 cut(s) 477
AfaI GTAC 1 cut(s) 410
AfiI CCNNNNNNNGG 1 cut(s) 276
AflII CTTAAG 1 cut(s) 416
AgeI ACCGGT 1 cut(s) 148
AgsI TTSAA 5 cut(s) 68, 96, 178, 322, 406
AleI CACNNNNGTG 1 cut(s) 369
AluBI AGCT 3 cut(s) 122, 137, 274
AluI AGCT 3 cut(s) 122, 137, 274
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 2 cut(s) 43, 392
AlwI GGATC 2 cut(s) 41, 455
Ama87I CYCGRG 1 cut(s) 269
Aor13HI TCCGGA 1 cut(s) 276
AsiGI ACCGGT 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 266
AsuC2I CCSGG 1 cut(s) 31
AsuHPI GGTGA 1 cut(s) 138
AvaI CYCGRG 1 cut(s) 269
AvaII GGWCC 1 cut(s) 266
BanII GRGCYC 1 cut(s) 276
BbsI GAAGAC 1 cut(s) 185
Bbv12I GWGCWC 1 cut(s) 276
BbvCI CCTCAGC 1 cut(s) 342
BccI CCATC 2 cut(s) 101, 441
BclI TGATCA 1 cut(s) 361
BcnI CCSGG 1 cut(s) 31
BcoDI GTCTC 2 cut(s) 43, 392
BfaI CTAG 1 cut(s) 123
BfrI CTTAAG 1 cut(s) 416
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
BmcAI AGTACT 1 cut(s) 410
Bme1390I CCNGG 1 cut(s) 31
Bme18I GGWCC 1 cut(s) 266
BmeT110I CYCGRG 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 266
BmiI GGNNCC 1 cut(s) 268
BmrFI CCNGG 1 cut(s) 31
BpiI GAAGAC 1 cut(s) 185
Bpu10I CCTNAGC 2 cut(s) 219, 342
BpuEI CTTGAG 1 cut(s) 353
BpuMI CCSGG 1 cut(s) 31
BsaJI CCNNGG 1 cut(s) 450
BsaWI WCCGGW 2 cut(s) 148, 276
BsaXI ACNNNNNCTCC 2 cut(s) 258, 288
Bsc4I CCNNNNNNNGG 1 cut(s) 276
Bse118I RCCGGY 1 cut(s) 148
Bse1I ACTGG 1 cut(s) 464
BseAI TCCGGA 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 450
BseGI GGATG 2 cut(s) 10, 433
BseLI CCNNNNNNNGG 1 cut(s) 276
BseMII CTCAG 2 cut(s) 210, 333
BseNI ACTGG 1 cut(s) 464
Bsh1236I CGCG 1 cut(s) 17
BshTI ACCGGT 1 cut(s) 148
BsiHKAI GWGCWC 1 cut(s) 276
BsiHKCI CYCGRG 1 cut(s) 269
BsiSI CCGG 3 cut(s) 30, 149, 277
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 276
BsmAI GTCTC 2 cut(s) 43, 392
BsmFI GGGAC 1 cut(s) 221
BsoBI CYCGRG 1 cut(s) 269
Bsp1286I GDGCHC 1 cut(s) 276
Bsp13I TCCGGA 1 cut(s) 276
Bsp143I GATC 3 cut(s) 33, 361, 460
BspACI CCGC 4 cut(s) 17, 227, 254, 369
BspCNI CTCAG 2 cut(s) 211, 334
BspEI TCCGGA 1 cut(s) 276
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 1 cut(s) 268
BspPI GGATC 2 cut(s) 41, 455
BspTI CTTAAG 1 cut(s) 416
BsrFI RCCGGY 1 cut(s) 148
BsrI ACTGG 1 cut(s) 464
BssAI RCCGGY 1 cut(s) 148
BssECI CCNNGG 1 cut(s) 450
BssMI GATC 3 cut(s) 33, 361, 460
Bst4CI ACNGT 1 cut(s) 82
Bst6I CTCTTC 2 cut(s) 342, 471
BstAFI CTTAAG 1 cut(s) 416
BstDEI CTNAG 3 cut(s) 219, 305, 342
BstF5I GGATG 2 cut(s) 10, 433
BstFNI CGCG 1 cut(s) 17
BstKTI GATC 3 cut(s) 36, 364, 463
BstMAI GTCTC 2 cut(s) 43, 392
BstMBI GATC 3 cut(s) 33, 361, 460
BstSCI CCNGG 1 cut(s) 29
BstUI CGCG 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 185
BstX2I RGATCY 1 cut(s) 460
BstYI RGATCY 1 cut(s) 460
BtsCI GGATG 2 cut(s) 10, 433
Cfr10I RCCGGY 1 cut(s) 148
Cfr13I GGNCC 1 cut(s) 266
Csp6I GTAC 1 cut(s) 409
CspAI ACCGGT 1 cut(s) 148
CviJI RGCY 9 cut(s) 122, 137, 166, 216, 223, 274, 309, 341, 455
CviKI_1 RGCY 9 cut(s) 122, 137, 166, 216, 223, 274, 309, 341, 455
CviQI GTAC 1 cut(s) 409
DdeI CTNAG 3 cut(s) 219, 305, 342
DpnI GATC 3 cut(s) 35, 363, 462
DpnII GATC 3 cut(s) 33, 361, 460
Eam1104I CTCTTC 2 cut(s) 342, 471
EarI CTCTTC 2 cut(s) 342, 471
Ecl136II GAGCTC 1 cut(s) 274
Eco24I GRGCYC 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 266
Eco53kI GAGCTC 1 cut(s) 274
Eco57I CTGAAG 1 cut(s) 477
Eco88I CYCGRG 1 cut(s) 269
EcoICRI GAGCTC 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 276
FaiI YATR 3 cut(s) 261, 290, 354
FaqI GGGAC 1 cut(s) 221
FbaI TGATCA 1 cut(s) 361
Fnu4HI GCNGC 1 cut(s) 18
FokI GGATG 2 cut(s) 17, 420
FriOI GRGCYC 1 cut(s) 276
Fsp4HI GCNGC 1 cut(s) 18
FspBI CTAG 1 cut(s) 123
GluI GCNGC 1 cut(s) 18
HapII CCGG 3 cut(s) 30, 149, 277
HincII GTYRAC 2 cut(s) 27, 378
HindII GTYRAC 2 cut(s) 27, 378
HinfI GANTC 2 cut(s) 61, 188
HpaI GTTAAC 2 cut(s) 27, 378
HpaII CCGG 3 cut(s) 30, 149, 277
HphI GGTGA 1 cut(s) 138
Hpy166II GTNNAC 2 cut(s) 27, 378
Hpy188I TCNGA 2 cut(s) 103, 193
Hpy188III TCNNGA 1 cut(s) 277
Hpy8I GTNNAC 2 cut(s) 27, 378
HpyAV CCTTC 1 cut(s) 331
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4V TGCA 1 cut(s) 423
HpyF3I CTNAG 3 cut(s) 219, 305, 342
Kpn2I TCCGGA 1 cut(s) 276
Ksp22I TGATCA 1 cut(s) 361
KspAI GTTAAC 2 cut(s) 27, 378
Kzo9I GATC 3 cut(s) 33, 361, 460
LmnI GCTCC 2 cut(s) 119, 279
LpnPI CCDG 6 cut(s) 43, 162, 231, 243, 290, 477
MaeI CTAG 1 cut(s) 123
MaeIII GTNAC 2 cut(s) 82, 185
MalI GATC 3 cut(s) 35, 363, 462
MboI GATC 3 cut(s) 33, 361, 460
MboII GAAGA 4 cut(s) 56, 190, 359, 470
MflI RGATCY 1 cut(s) 460
MhlI GDGCHC 1 cut(s) 276
MlyI GAGTC 1 cut(s) 182
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 4 cut(s) 156, 190, 337, 460
MroI TCCGGA 1 cut(s) 276
MseI TTAA 3 cut(s) 26, 377, 417
MslI CAYNNNNRTG 1 cut(s) 369
MspA1I CMGCKG 1 cut(s) 369
MspCI CTTAAG 1 cut(s) 416
MspI CCGG 3 cut(s) 30, 149, 277
MspR9I CCNGG 1 cut(s) 31
MvnI CGCG 1 cut(s) 17
NciI CCSGG 1 cut(s) 31
NdeII GATC 3 cut(s) 33, 361, 460
NlaIV GGNNCC 1 cut(s) 268
NmeAIII GCCGAG 1 cut(s) 431
NmuCI GTSAC 2 cut(s) 82, 185
OliI CACNNNNGTG 1 cut(s) 369
PfeI GAWTC 1 cut(s) 61
PinAI ACCGGT 1 cut(s) 148
PkrI GCNGC 1 cut(s) 19
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
Psp124BI GAGCTC 1 cut(s) 276
PspN4I GGNNCC 1 cut(s) 268
PspPI GGNCC 1 cut(s) 266
PsuI RGATCY 1 cut(s) 460
RsaI GTAC 1 cut(s) 410
RsaNI GTAC 1 cut(s) 409
RseI CAYNNNNRTG 1 cut(s) 369
SacI GAGCTC 1 cut(s) 276
SaqAI TTAA 3 cut(s) 26, 377, 417
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 3 cut(s) 33, 361, 460
Sau96I GGNCC 1 cut(s) 266
ScaI AGTACT 1 cut(s) 410
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 1 cut(s) 31
SduI GDGCHC 1 cut(s) 276
SetI ASST 6 cut(s) 94, 124, 139, 276, 327, 452
SinI GGWCC 1 cut(s) 266
SmiMI CAYNNNNRTG 1 cut(s) 369
SmlI CTYRAG 2 cut(s) 332, 416
SmoI CTYRAG 2 cut(s) 332, 416
SsiI CCGC 4 cut(s) 17, 227, 254, 369
SspMI CTAG 1 cut(s) 123
SstI GAGCTC 1 cut(s) 276
StyD4I CCNGG 1 cut(s) 29
TaaI ACNGT 1 cut(s) 82
TatI WGTACW 1 cut(s) 408
TauI GCSGC 1 cut(s) 20
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 3 cut(s) 26, 377, 417
Tru9I TTAA 3 cut(s) 26, 377, 417
TseFI GTSAC 2 cut(s) 82, 185
Tsp45I GTSAC 2 cut(s) 82, 185
TspDTI ATGAA 1 cut(s) 21
Vha464I CTTAAG 1 cut(s) 416
VpaK11BI GGWCC 1 cut(s) 266
XspI CTAG 1 cut(s) 123
ZrmI AGTACT 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.