Prupe.7G192900_v2.0.a1

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0010995
Physical Location & Seq
Reverse (-)
18381958 .. 18384145
2188 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G192900.1

Sequence Viewer

Length: 579 bp
ATGAATGACAATGGTAGCGGCAAGTTGACCGGGATCAGGCAGATTGTCAAGTTCAAAGAAATCCTGCAGAAGTGGCAAGTTGTCACGCTCGGCTCGAGGGCAAACAGCCCCCGAGCCAGCACCCGCTCTGATCGAGGGGAGGGCACTCCTCGTCGAGGAGAGGGCACTCCTCGTCGAGAGGAAGGCGCTTCCCATATAGAGGAGGGCACTCCCCGTTCTGATCGAAATAGAGGGGGAATTTCACCGGCAATTAGCAAGAGGCTAACAAATATTATTTGTGATTCGGACGAGGATAACGGCCACAGTCCCGAACCGCCAGCAGATGTTCCCGAAGGGTACTTGGCGGTTTATGTTGGACCGGAGCTTCGGAGGTTCATCATTCCCACTAGCTACCTCAGCCACTCCCTTTTCAAAGTATTGCTGGAGAAGGCTGAGGAGGAATTTGGGTTTGATCATAGTGGCGGGCTCACCATCCCATGTGAGACTGAGACCTTCAAGTACCTCCTGAAGTGCATGGAGAACCATCAGAAAGCTCACCCTGATGAAAGCCCAGCTGGAAACTGGAAACTCATTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

193

Amino Acids

21.34

Weight (kDa)

6.32

Isoelectric Point (pI)

53.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010995)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43120 AT5G20810 AT5G20810
fragaria_vesca FvH4_1g09280 FvH4_1g09280
malus_domestica MD02G1100000.v1.1 MD15G1222900.v1.1
prunus_persica Prupe.7G192900_v2.0.a1
pyrus_communis pycom02g07800 pycom15g19700
rosa_chinensis RchiOBHm_Chr2g0095841
rosa_laevigata RLG00000016599
rosa_multiflora Rmu_sc0000496.1_g000006
rosa_roxburghii Rroxscaffold_2G00146040
rosa_rugosa Rorug02G0053200
rosa_samantha Rh2AG102300 Rh2BG103700 Rh2CG106200 Rh2DG103800
rosa_wichuraiana Rw2G007780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 126
AciI CCGC 5 cut(s) 18, 124, 314, 344, 462
AclWI GGATC 1 cut(s) 41
AcoI YGGCCR 1 cut(s) 298
AcsI RAATTY 2 cut(s) 237, 440
AcuI CTGAAG 1 cut(s) 527
AfaI GTAC 2 cut(s) 338, 500
AfiI CCNNNNNNNGG 3 cut(s) 36, 155, 199
AgsI TTSAA 4 cut(s) 55, 412, 496, 575
AluBI AGCT 4 cut(s) 364, 390, 533, 554
AluI AGCT 4 cut(s) 364, 390, 533, 554
Alw26I GTCTC 2 cut(s) 476, 482
AlwI GGATC 1 cut(s) 41
Ama87I CYCGRG 2 cut(s) 94, 111
AoxI GGCC 1 cut(s) 298
ApoI RAATTY 2 cut(s) 237, 440
ArsI GACNNNNNNTTYG 2 cut(s) 348, 380
AspLEI GCGC 1 cut(s) 188
AspS9I GGNCC 1 cut(s) 356
AsuC2I CCSGG 1 cut(s) 31
AsuHPI GGTGA 3 cut(s) 234, 460, 527
AvaI CYCGRG 2 cut(s) 94, 111
AvaII GGWCC 1 cut(s) 356
BaeGI GKGCMC 3 cut(s) 146, 167, 209
BanII GRGCYC 1 cut(s) 468
BbvCI CCTCAGC 2 cut(s) 395, 432
BccI CCATC 2 cut(s) 479, 531
BceAI ACGGC 1 cut(s) 313
BclI TGATCA 1 cut(s) 451
BcnI CCSGG 1 cut(s) 31
BcoDI GTCTC 2 cut(s) 476, 482
BfaI CTAG 1 cut(s) 387
BfmI CTRYAG 1 cut(s) 65
BfoI RGCGCY 1 cut(s) 189
BisI GCNGC 1 cut(s) 19
BlsI GCNGC 1 cut(s) 20
Bme1390I CCNGG 1 cut(s) 31
Bme18I GGWCC 1 cut(s) 356
BmeT110I CYCGRG 2 cut(s) 94, 111
BmgT120I GGNCC 1 cut(s) 356
BmrFI CCNGG 1 cut(s) 31
BpmI CTGGAG 1 cut(s) 443
Bpu10I CCTNAGC 2 cut(s) 395, 432
BpuMI CCSGG 1 cut(s) 31
BsaI GGTCTC 1 cut(s) 482
BsaWI WCCGGW 1 cut(s) 358
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 155, 199
Bse118I RCCGGY 1 cut(s) 244
Bse1I ACTGG 1 cut(s) 566
BseGI GGATG 1 cut(s) 471
BseLI CCNNNNNNNGG 3 cut(s) 36, 155, 199
BseMII CTCAG 3 cut(s) 409, 423, 477
BseNI ACTGG 1 cut(s) 566
BseRI GAGGAG 5 cut(s) 138, 159, 171, 215, 449
BseSI GKGCMC 3 cut(s) 146, 167, 209
BseYI CCCAGC 1 cut(s) 550
BshFI GGCC 1 cut(s) 300
BsiHKCI CYCGRG 2 cut(s) 94, 111
BsiSI CCGG 3 cut(s) 30, 245, 359
BslFI GGGAC 1 cut(s) 291
BslI CCNNNNNNNGG 3 cut(s) 36, 155, 199
BsmAI GTCTC 2 cut(s) 476, 482
BsmFI GGGAC 1 cut(s) 291
BsnI GGCC 1 cut(s) 300
Bso31I GGTCTC 1 cut(s) 482
BsoBI CYCGRG 2 cut(s) 94, 111
Bsp1286I GDGCHC 4 cut(s) 146, 167, 209, 468
Bsp143I GATC 4 cut(s) 33, 130, 220, 451
BspACI CCGC 5 cut(s) 18, 124, 314, 344, 462
BspANI GGCC 1 cut(s) 300
BspCNI CTCAG 3 cut(s) 408, 424, 478
BspMAI CTGCAG 1 cut(s) 69
BspPI GGATC 1 cut(s) 41
BspTNI GGTCTC 1 cut(s) 482
BsrBI CCGCTC 1 cut(s) 126
BsrFI RCCGGY 1 cut(s) 244
BsrI ACTGG 1 cut(s) 566
BssAI RCCGGY 1 cut(s) 244
BssMI GATC 4 cut(s) 33, 130, 220, 451
Bst4CI ACNGT 1 cut(s) 305
BstC8I GCNNGC 3 cut(s) 118, 318, 464
BstDEI CTNAG 3 cut(s) 395, 432, 486
BstENI CCTNNNNNAGG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 471
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 4 cut(s) 36, 133, 223, 454
BstMAI GTCTC 2 cut(s) 476, 482
BstMBI GATC 4 cut(s) 33, 130, 220, 451
BstMWI GCNNNNNNNGC 2 cut(s) 73, 396
BstSCI CCNGG 1 cut(s) 29
BstSFI CTRYAG 1 cut(s) 65
BstSLI GKGCMC 3 cut(s) 146, 167, 209
BsuRI GGCC 1 cut(s) 300
BtsCI GGATG 1 cut(s) 471
Cac8I GCNNGC 3 cut(s) 118, 318, 464
CfoI GCGC 1 cut(s) 188
Cfr10I RCCGGY 1 cut(s) 244
Cfr13I GGNCC 1 cut(s) 356
Csp6I GTAC 2 cut(s) 337, 499
CviAII CATG 2 cut(s) 477, 514
CviQI GTAC 2 cut(s) 337, 499
DdeI CTNAG 3 cut(s) 395, 432, 486
DpnI GATC 4 cut(s) 35, 132, 222, 453
DpnII GATC 4 cut(s) 33, 130, 220, 451
EaeI YGGCCR 1 cut(s) 298
Eco24I GRGCYC 1 cut(s) 468
Eco31I GGTCTC 1 cut(s) 482
Eco47I GGWCC 1 cut(s) 356
Eco57I CTGAAG 1 cut(s) 527
Eco88I CYCGRG 2 cut(s) 94, 111
EcoNI CCTNNNNNAGG 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 468
FaeI CATG 2 cut(s) 480, 517
FaiI YATR 6 cut(s) 195, 197, 351, 456, 478, 515
FaqI GGGAC 1 cut(s) 291
FatI CATG 2 cut(s) 476, 513
FauI CCCGC 2 cut(s) 131, 455
FbaI TGATCA 1 cut(s) 451
Fnu4HI GCNGC 1 cut(s) 19
FokI GGATG 1 cut(s) 458
FriOI GRGCYC 1 cut(s) 468
Fsp4HI GCNGC 1 cut(s) 19
FspBI CTAG 1 cut(s) 387
GlaI GCGC 1 cut(s) 187
GluI GCNGC 1 cut(s) 19
GsaI CCCAGC 1 cut(s) 554
GsuI CTGGAG 1 cut(s) 443
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 1 cut(s) 300
HapII CCGG 3 cut(s) 30, 245, 359
HhaI GCGC 1 cut(s) 188
Hin1II CATG 2 cut(s) 480, 517
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HincII GTYRAC 1 cut(s) 27
HindII GTYRAC 1 cut(s) 27
HinfI GANTC 1 cut(s) 281
HpaII CCGG 3 cut(s) 30, 245, 359
HphI GGTGA 3 cut(s) 234, 460, 527
Hpy166II GTNNAC 1 cut(s) 27
Hpy188I TCNGA 5 cut(s) 130, 220, 286, 369, 528
Hpy188III TCNNGA 4 cut(s) 176, 308, 329, 505
Hpy8I GTNNAC 1 cut(s) 27
Hpy99I CGWCG 2 cut(s) 156, 177
HpyAV CCTTC 4 cut(s) 176, 326, 421, 502
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4V TGCA 2 cut(s) 67, 513
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 396
HpyF3I CTNAG 3 cut(s) 395, 432, 486
Hsp92II CATG 2 cut(s) 480, 517
HspAI GCGC 1 cut(s) 186
Ksp22I TGATCA 1 cut(s) 451
Kzo9I GATC 4 cut(s) 33, 130, 220, 451
LmnI GCTCC 1 cut(s) 361
MaeI CTAG 1 cut(s) 387
MaeIII GTNAC 1 cut(s) 82
MalI GATC 4 cut(s) 35, 132, 222, 453
MbiI CCGCTC 1 cut(s) 126
MboI GATC 4 cut(s) 33, 130, 220, 451
MhlI GDGCHC 4 cut(s) 146, 167, 209, 468
MluCI AATT 3 cut(s) 237, 249, 440
MmeI TCCRAC 1 cut(s) 334
MslI CAYNNNNRTG 1 cut(s) 540
MspA1I CMGCKG 1 cut(s) 554
MspI CCGG 3 cut(s) 30, 245, 359
MspR9I CCNGG 1 cut(s) 31
MwoI GCNNNNNNNGC 2 cut(s) 73, 396
NciI CCSGG 1 cut(s) 31
NdeII GATC 4 cut(s) 33, 130, 220, 451
NlaIII CATG 2 cut(s) 480, 517
NmeAIII GCCGAG 1 cut(s) 69
NmuCI GTSAC 1 cut(s) 82
PaeR7I CTCGAG 1 cut(s) 94
PcsI WCGNNNNNNNCGW 1 cut(s) 92
PfeI GAWTC 1 cut(s) 281
PkrI GCNGC 1 cut(s) 20
PspFI CCCAGC 1 cut(s) 550
PspPI GGNCC 1 cut(s) 356
PspXI VCTCGAGB 1 cut(s) 94
PstI CTGCAG 1 cut(s) 69
PvuII CAGCTG 1 cut(s) 554
RsaI GTAC 2 cut(s) 338, 500
RsaNI GTAC 2 cut(s) 337, 499
RseI CAYNNNNRTG 1 cut(s) 540
SatI GCNGC 1 cut(s) 19
Sau3AI GATC 4 cut(s) 33, 130, 220, 451
Sau96I GGNCC 1 cut(s) 356
ScrFI CCNGG 1 cut(s) 31
SduI GDGCHC 4 cut(s) 146, 167, 209, 468
SetI ASST 8 cut(s) 366, 374, 392, 396, 494, 504, 535, 556
SfcI CTRYAG 1 cut(s) 65
Sfr274I CTCGAG 1 cut(s) 94
SinI GGWCC 1 cut(s) 356
SlaI CTCGAG 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 540
SmlI CTYRAG 1 cut(s) 94
SmoI CTYRAG 1 cut(s) 94
Sse9I AATT 3 cut(s) 237, 249, 440
SsiI CCGC 5 cut(s) 18, 124, 314, 344, 462
SspI AATATT 1 cut(s) 271
SspMI CTAG 1 cut(s) 387
StyD4I CCNGG 1 cut(s) 29
TaaI ACNGT 1 cut(s) 305
TaqI TCGA 5 cut(s) 95, 133, 154, 175, 223
TasI AATT 3 cut(s) 237, 249, 440
TauI GCSGC 1 cut(s) 21
TfiI GAWTC 1 cut(s) 281
TseFI GTSAC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 3 cut(s) 17, 364, 558
VpaK11BI GGWCC 1 cut(s) 356
XagI CCTNNNNNAGG 1 cut(s) 153
XapI RAATTY 2 cut(s) 237, 440
XcmI CCANNNNNNNNNTGG 1 cut(s) 558
XhoI CTCGAG 1 cut(s) 94
XspI CTAG 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.