AT5G20810

auxin-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010995
Physical Location & Seq
Forward (+)
7043758 .. 7045830
2073 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G20810.1

Sequence Viewer

Length: 498 bp
ATGGATGAAAACAACGCGGCCAAGTTAACCGGTATCAGGCAGATTGTCAGGCTTAAGGAGATTTTGCAGAAATGGCAAACCGTCACCATAGGCCCCAAGTCAGAAGTTCCTCCATTGGCAGCTGGAAAGCAAGCAGTGGCGATGATTTCGCCCGCCATCAACAAGAGGCTATTAGATGTCAAGAACGGTGACTCGGATGAGGAAACCTGTCAAAGTCCTGAGCCGCCTCATGATGTTCCTAAAGGGAATCTTGCTGTTTATGTTGGACCGGAGCTAAGGAGGTTTATCATACCGACAAGCTATCTTAGCCACTCTCTGTTCAAGGTTTTGCTCGAGAAAGCAGAGGAAGAGTTTGGGTTTGATCAGAGCGGTGCGCTCACCATCCCTTGCGAGGTCGAGACTTTCAAGTACTTGCTTAAGTGCATGGAGAACAATCTTAAAGATCTTCATCCTGATGACAACTCTGATGGGGAGGCAGTAGCAGCAAAGGAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

165

Amino Acids

18.27

Weight (kDa)

4.98

Isoelectric Point (pI)

45.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 18 - 141 3.6e-27 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010995)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43120 AT5G20810 AT5G20810
fragaria_vesca FvH4_1g09280 FvH4_1g09280
malus_domestica MD02G1100000.v1.1 MD15G1222900.v1.1
prunus_persica Prupe.7G192900_v2.0.a1
pyrus_communis pycom02g07800 pycom15g19700
rosa_chinensis RchiOBHm_Chr2g0095841
rosa_laevigata RLG00000016599
rosa_multiflora Rmu_sc0000496.1_g000006
rosa_roxburghii Rroxscaffold_2G00146040
rosa_rugosa Rorug02G0053200
rosa_samantha Rh2AG102300 Rh2BG103700 Rh2CG106200 Rh2DG103800
rosa_wichuraiana Rw2G007780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 369
AccII CGCG 1 cut(s) 17
AciI CCGC 4 cut(s) 17, 153, 224, 369
AcoI YGGCCR 1 cut(s) 18
AfaI GTAC 1 cut(s) 410
AfiI CCNNNNNNNGG 2 cut(s) 36, 391
AflII CTTAAG 2 cut(s) 53, 416
AgeI ACCGGT 1 cut(s) 29
AgsI TTSAA 2 cut(s) 322, 406
AluBI AGCT 3 cut(s) 122, 274, 300
AluI AGCT 3 cut(s) 122, 274, 300
Alw26I GTCTC 1 cut(s) 392
Ama87I CYCGRG 1 cut(s) 332
AoxI GGCC 2 cut(s) 18, 91
ApeKI GCWGC 2 cut(s) 119, 482
AsiGI ACCGGT 1 cut(s) 29
AspLEI GCGC 1 cut(s) 376
AspS9I GGNCC 2 cut(s) 92, 266
AsuHPI GGTGA 3 cut(s) 76, 200, 370
AvaI CYCGRG 1 cut(s) 332
AvaII GGWCC 1 cut(s) 266
BbvI GCAGC 2 cut(s) 131, 494
BccI CCATC 3 cut(s) 164, 389, 461
BclI TGATCA 1 cut(s) 361
BcoDI GTCTC 1 cut(s) 392
BfrI CTTAAG 2 cut(s) 53, 416
BglII AGATCT 1 cut(s) 442
BisI GCNGC 4 cut(s) 18, 120, 224, 483
BlsI GCNGC 4 cut(s) 19, 121, 225, 484
BmcAI AGTACT 1 cut(s) 410
Bme18I GGWCC 1 cut(s) 266
BmeT110I CYCGRG 1 cut(s) 332
BmgT120I GGNCC 2 cut(s) 92, 266
BmiI GGNNCC 1 cut(s) 94
Bpu10I CCTNAGC 2 cut(s) 219, 275
BsaBI GATNNNNATC 1 cut(s) 447
BsaWI WCCGGW 2 cut(s) 29, 268
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 391
Bse118I RCCGGY 1 cut(s) 29
Bse8I GATNNNNATC 1 cut(s) 447
BseGI GGATG 4 cut(s) 10, 202, 381, 448
BseJI GATNNNNATC 1 cut(s) 447
BseLI CCNNNNNNNGG 2 cut(s) 36, 391
BseMII CTCAG 1 cut(s) 210
BseXI GCAGC 2 cut(s) 131, 494
Bsh1236I CGCG 1 cut(s) 17
BshFI GGCC 2 cut(s) 20, 93
BshTI ACCGGT 1 cut(s) 29
BsiHKCI CYCGRG 1 cut(s) 332
BsiSI CCGG 2 cut(s) 30, 269
BslI CCNNNNNNNGG 2 cut(s) 36, 391
BsmAI GTCTC 1 cut(s) 392
BsnI GGCC 2 cut(s) 20, 93
BsoBI CYCGRG 1 cut(s) 332
Bsp143I GATC 2 cut(s) 361, 442
BspACI CCGC 4 cut(s) 17, 153, 224, 369
BspANI GGCC 2 cut(s) 20, 93
BspCNI CTCAG 1 cut(s) 211
BspFNI CGCG 1 cut(s) 17
BspHI TCATGA 1 cut(s) 229
BspLI GGNNCC 1 cut(s) 94
BspTI CTTAAG 2 cut(s) 53, 416
BsrBI CCGCTC 1 cut(s) 369
BsrFI RCCGGY 1 cut(s) 29
BssAI RCCGGY 1 cut(s) 29
BssMI GATC 2 cut(s) 361, 442
Bst4CI ACNGT 2 cut(s) 82, 188
Bst6I CTCTTC 2 cut(s) 342, 486
BstAFI CTTAAG 2 cut(s) 53, 416
BstC8I GCNNGC 2 cut(s) 132, 153
BstDEI CTNAG 3 cut(s) 219, 275, 305
BstF5I GGATG 4 cut(s) 10, 202, 381, 448
BstFNI CGCG 1 cut(s) 17
BstHHI GCGC 1 cut(s) 376
BstKTI GATC 2 cut(s) 364, 445
BstMAI GTCTC 1 cut(s) 392
BstMBI GATC 2 cut(s) 361, 442
BstMWI GCNNNNNNNGC 3 cut(s) 73, 306, 482
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 2 cut(s) 131, 494
BstX2I RGATCY 1 cut(s) 442
BstYI RGATCY 1 cut(s) 442
BsuRI GGCC 2 cut(s) 20, 93
BtgZI GCGATG 1 cut(s) 155
BtsCI GGATG 4 cut(s) 10, 202, 381, 448
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 2 cut(s) 132, 153
CciI TCATGA 1 cut(s) 229
CfoI GCGC 1 cut(s) 376
Cfr10I RCCGGY 1 cut(s) 29
Cfr13I GGNCC 2 cut(s) 92, 266
Csp6I GTAC 1 cut(s) 409
CspAI ACCGGT 1 cut(s) 29
CviAII CATG 2 cut(s) 230, 424
CviJI RGCY 9 cut(s) 20, 52, 93, 122, 169, 223, 274, 300, 309
CviKI_1 RGCY 9 cut(s) 20, 52, 93, 122, 169, 223, 274, 300, 309
CviQI GTAC 1 cut(s) 409
DdeI CTNAG 3 cut(s) 219, 275, 305
DpnI GATC 2 cut(s) 363, 444
DpnII GATC 2 cut(s) 361, 442
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 2 cut(s) 342, 486
EarI CTCTTC 2 cut(s) 342, 486
Eco47I GGWCC 1 cut(s) 266
Eco88I CYCGRG 1 cut(s) 332
EcoO109I RGGNCCY 1 cut(s) 92
FaeI CATG 2 cut(s) 233, 427
FaiI YATR 5 cut(s) 89, 231, 261, 290, 425
FalI AAGNNNNNCTT 2 cut(s) 234, 266
FatI CATG 2 cut(s) 229, 423
FauI CCCGC 1 cut(s) 160
FbaI TGATCA 1 cut(s) 361
Fnu4HI GCNGC 4 cut(s) 18, 120, 224, 483
FokI GGATG 4 cut(s) 17, 209, 368, 435
Fsp4HI GCNGC 4 cut(s) 18, 120, 224, 483
GlaI GCGC 1 cut(s) 375
GluI GCNGC 4 cut(s) 18, 120, 224, 483
HaeIII GGCC 2 cut(s) 20, 93
HapII CCGG 2 cut(s) 30, 269
HhaI GCGC 1 cut(s) 376
Hin1II CATG 2 cut(s) 233, 427
Hin6I GCGC 1 cut(s) 374
HinP1I GCGC 1 cut(s) 374
HincII GTYRAC 1 cut(s) 27
HindII GTYRAC 1 cut(s) 27
HinfI GANTC 2 cut(s) 191, 247
HpaI GTTAAC 1 cut(s) 27
HpaII CCGG 2 cut(s) 30, 269
HphI GGTGA 3 cut(s) 76, 200, 370
Hpy166II GTNNAC 1 cut(s) 27
Hpy188I TCNGA 4 cut(s) 103, 196, 366, 466
Hpy188III TCNNGA 6 cut(s) 181, 218, 230, 334, 397, 452
Hpy8I GTNNAC 1 cut(s) 27
HpyCH4III ACNGT 2 cut(s) 82, 188
HpyCH4V TGCA 2 cut(s) 67, 423
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 306, 482
HpyF3I CTNAG 3 cut(s) 219, 275, 305
Hsp92II CATG 2 cut(s) 233, 427
HspAI GCGC 1 cut(s) 374
Ksp22I TGATCA 1 cut(s) 361
KspAI GTTAAC 1 cut(s) 27
Kzo9I GATC 2 cut(s) 361, 442
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 8 cut(s) 22, 34, 43, 108, 220, 231, 282, 465
Lsp1109I GCAGC 2 cut(s) 131, 494
MaeIII GTNAC 2 cut(s) 82, 188
MalI GATC 2 cut(s) 363, 444
MbiI CCGCTC 1 cut(s) 369
MboI GATC 2 cut(s) 361, 442
MboII GAAGA 2 cut(s) 359, 437
MflI RGATCY 1 cut(s) 442
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 8 cut(s) 120, 159, 193, 237, 273, 337, 385, 466
MseI TTAA 4 cut(s) 26, 54, 417, 438
MslI CAYNNNNRTG 1 cut(s) 453
MspA1I CMGCKG 1 cut(s) 122
MspCI CTTAAG 2 cut(s) 53, 416
MspI CCGG 2 cut(s) 30, 269
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 3 cut(s) 73, 306, 482
NdeII GATC 2 cut(s) 361, 442
NlaIII CATG 2 cut(s) 233, 427
NlaIV GGNNCC 1 cut(s) 94
NmuCI GTSAC 2 cut(s) 82, 188
PaeR7I CTCGAG 1 cut(s) 332
PagI TCATGA 1 cut(s) 229
PfeI GAWTC 1 cut(s) 247
PinAI ACCGGT 1 cut(s) 29
PkrI GCNGC 4 cut(s) 19, 121, 225, 484
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
PspN4I GGNNCC 1 cut(s) 94
PspPI GGNCC 2 cut(s) 92, 266
PsuI RGATCY 1 cut(s) 442
PvuII CAGCTG 1 cut(s) 122
RsaI GTAC 1 cut(s) 410
RsaNI GTAC 1 cut(s) 409
RseI CAYNNNNRTG 1 cut(s) 453
SaqAI TTAA 4 cut(s) 26, 54, 417, 438
SatI GCNGC 4 cut(s) 18, 120, 224, 483
Sau3AI GATC 2 cut(s) 361, 442
Sau96I GGNCC 2 cut(s) 92, 266
ScaI AGTACT 1 cut(s) 410
SchI GAGTC 1 cut(s) 185
SetI ASST 7 cut(s) 124, 209, 276, 284, 302, 327, 396
Sfr274I CTCGAG 1 cut(s) 332
SinI GGWCC 1 cut(s) 266
SlaI CTCGAG 1 cut(s) 332
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 3 cut(s) 53, 332, 416
SmoI CTYRAG 3 cut(s) 53, 332, 416
SsiI CCGC 4 cut(s) 17, 153, 224, 369
TaaI ACNGT 2 cut(s) 82, 188
TaqI TCGA 2 cut(s) 333, 396
TatI WGTACW 1 cut(s) 408
TauI GCSGC 2 cut(s) 20, 226
TfiI GAWTC 1 cut(s) 247
Tru1I TTAA 4 cut(s) 26, 54, 417, 438
Tru9I TTAA 4 cut(s) 26, 54, 417, 438
TscAI CASTG 1 cut(s) 141
TseFI GTSAC 2 cut(s) 82, 188
TseI GCWGC 2 cut(s) 119, 482
Tsp45I GTSAC 2 cut(s) 82, 188
TspDTI ATGAA 2 cut(s) 21, 437
TspRI CASTG 1 cut(s) 141
Vha464I CTTAAG 2 cut(s) 53, 416
VpaK11BI GGWCC 1 cut(s) 266
XhoI CTCGAG 1 cut(s) 332
ZrmI AGTACT 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.