FvH4_1g09280

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0010995
Physical Location & Seq
Forward (+)
4955620 .. 4957759
2140 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g09280.t2

Sequence Viewer

Length: 621 bp
ATGGATGAGCATCATGGTAGCAGCAAGTTGACTGGAATTAGGCAGATTGTTAAGTTCAAAGAAATCCTGCAGAAATGGCAATCTGTCACGTTAGGCTCGAAAGGGAATAATAGCCCCAGAAAAGGGGGCAGTCCCCATTCTCGTTCGGATCGATTGGTAGTGAGGTGCAGCCCTCAATCCCATTCTGGTCGAAGGGTGACAATGGGCAGTCCTAGTCATAGTACCCTTTCGGCGGAAAACAGTCCCTTATCTAGTCGAGGAACCCTTTCACCAGCAATTAGTAGGAGGCTCACAAGTGTTATTGCTTGTGATTCGGATGAGGAATCATGCGCAAGCCCCGAGCCGCCATCTGATGTCCCCGAAGGGTATTTGGCGGTTTATGTTGGACCAGAGCTTCGGAGGTTCATCATTCCCACAAGCTACCTTAGTCACAACCTTTTCAAAGTGTTGTTGGAGAAGGCTGAAGAGGAGTTTGGATTTGATCATAGCGGGGGGCTCACTATTCCTTGCGAGACGGAGACCTTCAAGTACCTCTTGAAGTGCATGGAGAACCATCAGAAAGCTCACCCTGATGACACCCCAGCTGGAGCATGGAAATTGAGTGAGGAAGCAGAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

207

Amino Acids

22.66

Weight (kDa)

6.31

Isoelectric Point (pI)

67.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 102 - 181 1.1e-26 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010995)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43120 AT5G20810 AT5G20810
fragaria_vesca FvH4_1g09280 FvH4_1g09280
malus_domestica MD02G1100000.v1.1 MD15G1222900.v1.1
prunus_persica Prupe.7G192900_v2.0.a1
pyrus_communis pycom02g07800 pycom15g19700
rosa_chinensis RchiOBHm_Chr2g0095841
rosa_laevigata RLG00000016599
rosa_multiflora Rmu_sc0000496.1_g000006
rosa_roxburghii Rroxscaffold_2G00146040
rosa_rugosa Rorug02G0053200
rosa_samantha Rh2AG102300 Rh2BG103700 Rh2CG106200 Rh2DG103800
rosa_wichuraiana Rw2G007780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 331
AciI CCGC 4 cut(s) 233, 344, 374, 489
AclWI GGATC 1 cut(s) 156
AcuI CTGAAG 1 cut(s) 483
AfaI GTAC 2 cut(s) 223, 530
AfiI CCNNNNNNNGG 3 cut(s) 122, 123, 232
AgsI TTSAA 4 cut(s) 58, 442, 526, 538
AjuI GAANNNNNNNTTGG 2 cut(s) 456, 488
AluBI AGCT 4 cut(s) 394, 420, 563, 584
AluI AGCT 4 cut(s) 394, 420, 563, 584
Alw26I GTCTC 2 cut(s) 506, 512
AlwI GGATC 1 cut(s) 156
Ama87I CYCGRG 1 cut(s) 338
ApeKI GCWGC 2 cut(s) 21, 168
ArsI GACNNNNNNTTYG 2 cut(s) 378, 410
Asp700I GAANNNNTTC 1 cut(s) 265
AspLEI GCGC 1 cut(s) 332
AspS9I GGNCC 1 cut(s) 386
AsuHPI GGTGA 3 cut(s) 208, 261, 557
AvaI CYCGRG 1 cut(s) 338
AvaII GGWCC 1 cut(s) 386
BanII GRGCYC 1 cut(s) 498
BbvI GCAGC 2 cut(s) 33, 180
BccI CCATC 2 cut(s) 355, 561
BclI TGATCA 1 cut(s) 481
BcoDI GTCTC 2 cut(s) 506, 512
BfaI CTAG 2 cut(s) 213, 252
BfmI CTRYAG 1 cut(s) 68
BisI GCNGC 3 cut(s) 22, 169, 344
BlsI GCNGC 3 cut(s) 23, 170, 345
Bme18I GGWCC 1 cut(s) 386
BmeT110I CYCGRG 1 cut(s) 338
BmgT120I GGNCC 1 cut(s) 386
BmiI GGNNCC 1 cut(s) 262
BmsI GCATC 1 cut(s) 19
BpmI CTGGAG 1 cut(s) 606
Bsa29I ATCGAT 1 cut(s) 151
BsaBI GATNNNNATC 1 cut(s) 9
BsaI GGTCTC 1 cut(s) 512
Bsc4I CCNNNNNNNGG 3 cut(s) 122, 123, 232
Bse1I ACTGG 1 cut(s) 37
Bse8I GATNNNNATC 1 cut(s) 9
BseCI ATCGAT 1 cut(s) 151
BseGI GGATG 2 cut(s) 10, 322
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 3 cut(s) 122, 123, 232
BseNI ACTGG 1 cut(s) 37
BseRI GAGGAG 1 cut(s) 482
BseXI GCAGC 2 cut(s) 33, 180
BseYI CCCAGC 1 cut(s) 580
BsgI GTGCAG 1 cut(s) 187
BshVI ATCGAT 1 cut(s) 151
BsiHKCI CYCGRG 1 cut(s) 338
BslFI GGGAC 3 cut(s) 117, 228, 341
BslI CCNNNNNNNGG 3 cut(s) 122, 123, 232
BsmAI GTCTC 2 cut(s) 506, 512
BsmBI CGTCTC 1 cut(s) 506
BsmFI GGGAC 3 cut(s) 117, 228, 341
Bso31I GGTCTC 1 cut(s) 512
BsoBI CYCGRG 1 cut(s) 338
Bsp1286I GDGCHC 1 cut(s) 498
Bsp143I GATC 2 cut(s) 148, 481
BspACI CCGC 4 cut(s) 233, 344, 374, 489
BspDI ATCGAT 1 cut(s) 151
BspLI GGNNCC 1 cut(s) 262
BspMAI CTGCAG 1 cut(s) 72
BspPI GGATC 1 cut(s) 156
BspTNI GGTCTC 1 cut(s) 512
BsrI ACTGG 1 cut(s) 37
BssMI GATC 2 cut(s) 148, 481
Bst4CI ACNGT 1 cut(s) 242
Bst6I CTCTTC 2 cut(s) 459, 609
BstC8I GCNNGC 1 cut(s) 334
BstDEI CTNAG 1 cut(s) 425
BstF5I GGATG 2 cut(s) 10, 322
BstHHI GCGC 1 cut(s) 332
BstKTI GATC 2 cut(s) 151, 484
BstMAI GTCTC 2 cut(s) 506, 512
BstMBI GATC 2 cut(s) 148, 481
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstSFI CTRYAG 1 cut(s) 68
BstV1I GCAGC 2 cut(s) 33, 180
Bsu15I ATCGAT 1 cut(s) 151
BsuTUI ATCGAT 1 cut(s) 151
BtsCI GGATG 2 cut(s) 10, 322
Cac8I GCNNGC 1 cut(s) 334
CfoI GCGC 1 cut(s) 332
Cfr13I GGNCC 1 cut(s) 386
ClaI ATCGAT 1 cut(s) 151
Csp6I GTAC 2 cut(s) 222, 529
CviAII CATG 4 cut(s) 14, 327, 544, 591
CviQI GTAC 2 cut(s) 222, 529
DdeI CTNAG 1 cut(s) 425
DpnI GATC 2 cut(s) 150, 483
DpnII GATC 2 cut(s) 148, 481
Eam1104I CTCTTC 2 cut(s) 459, 609
EarI CTCTTC 2 cut(s) 459, 609
EciI GGCGGA 1 cut(s) 248
Eco24I GRGCYC 1 cut(s) 498
Eco31I GGTCTC 1 cut(s) 512
Eco47I GGWCC 1 cut(s) 386
Eco57I CTGAAG 1 cut(s) 483
Eco88I CYCGRG 1 cut(s) 338
EcoT38I GRGCYC 1 cut(s) 498
Esp3I CGTCTC 1 cut(s) 506
FaeI CATG 4 cut(s) 17, 330, 547, 594
FaiI YATR 7 cut(s) 15, 219, 328, 381, 486, 545, 592
FalI AAGNNNNNCTT 2 cut(s) 518, 550
FaqI GGGAC 3 cut(s) 117, 228, 341
FatI CATG 4 cut(s) 13, 326, 543, 590
FauI CCCGC 1 cut(s) 482
FbaI TGATCA 1 cut(s) 481
Fnu4HI GCNGC 3 cut(s) 22, 169, 344
FokI GGATG 2 cut(s) 17, 329
FriOI GRGCYC 1 cut(s) 498
Fsp4HI GCNGC 3 cut(s) 22, 169, 344
FspBI CTAG 2 cut(s) 213, 252
FspI TGCGCA 1 cut(s) 331
GlaI GCGC 1 cut(s) 331
GluI GCNGC 3 cut(s) 22, 169, 344
GsaI CCCAGC 1 cut(s) 584
GsuI CTGGAG 1 cut(s) 606
HhaI GCGC 1 cut(s) 332
Hin1II CATG 4 cut(s) 17, 330, 547, 594
Hin6I GCGC 1 cut(s) 330
HinP1I GCGC 1 cut(s) 330
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 2 cut(s) 311, 323
HphI GGTGA 3 cut(s) 208, 261, 557
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 5 cut(s) 148, 316, 352, 399, 558
Hpy188III TCNNGA 1 cut(s) 535
Hpy8I GTNNAC 1 cut(s) 30
HpyAV CCTTC 4 cut(s) 186, 356, 451, 532
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4IV ACGT 1 cut(s) 89
HpyCH4V TGCA 3 cut(s) 70, 168, 543
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpyF3I CTNAG 1 cut(s) 425
HpySE526I ACGT 1 cut(s) 89
Hsp92II CATG 4 cut(s) 17, 330, 547, 594
HspAI GCGC 1 cut(s) 330
Ksp22I TGATCA 1 cut(s) 481
Kzo9I GATC 2 cut(s) 148, 481
LmnI GCTCC 1 cut(s) 587
LpnPI CCDG 9 cut(s) 18, 80, 130, 171, 285, 402, 570, 582, 594
Lsp1109I GCAGC 2 cut(s) 33, 180
LweI GCATC 1 cut(s) 19
MaeI CTAG 2 cut(s) 213, 252
MaeII ACGT 1 cut(s) 89
MaeIII GTNAC 3 cut(s) 85, 196, 428
MalI GATC 2 cut(s) 150, 483
MboI GATC 2 cut(s) 148, 481
MboII GAAGA 1 cut(s) 476
MhlI GDGCHC 1 cut(s) 498
MluCI AATT 3 cut(s) 36, 276, 596
MmeI TCCRAC 2 cut(s) 364, 432
MnlI CCTC 9 cut(s) 156, 183, 251, 279, 313, 393, 460, 542, 598
MroXI GAANNNNTTC 1 cut(s) 265
MseI TTAA 1 cut(s) 51
MslI CAYNNNNRTG 1 cut(s) 570
MspA1I CMGCKG 1 cut(s) 584
MwoI GCNNNNNNNGC 1 cut(s) 76
NdeII GATC 2 cut(s) 148, 481
NlaIII CATG 4 cut(s) 17, 330, 547, 594
NlaIV GGNNCC 1 cut(s) 262
NmuCI GTSAC 3 cut(s) 85, 196, 428
NsbI TGCGCA 1 cut(s) 331
PcsI WCGNNNNNNNCGW 2 cut(s) 95, 148
PdmI GAANNNNTTC 1 cut(s) 265
PfeI GAWTC 2 cut(s) 311, 323
PkrI GCNGC 3 cut(s) 23, 170, 345
PspFI CCCAGC 1 cut(s) 580
PspN4I GGNNCC 1 cut(s) 262
PspPI GGNCC 1 cut(s) 386
PstI CTGCAG 1 cut(s) 72
PvuII CAGCTG 1 cut(s) 584
RsaI GTAC 2 cut(s) 223, 530
RsaNI GTAC 2 cut(s) 222, 529
RseI CAYNNNNRTG 1 cut(s) 570
SaqAI TTAA 1 cut(s) 51
SatI GCNGC 3 cut(s) 22, 169, 344
Sau3AI GATC 2 cut(s) 148, 481
Sau96I GGNCC 1 cut(s) 386
SduI GDGCHC 1 cut(s) 498
SfaNI GCATC 1 cut(s) 19
SfcI CTRYAG 1 cut(s) 68
SinI GGWCC 1 cut(s) 386
SmiMI CAYNNNNRTG 1 cut(s) 570
Sse9I AATT 3 cut(s) 36, 276, 596
SsiI CCGC 4 cut(s) 233, 344, 374, 489
SspMI CTAG 2 cut(s) 213, 252
TaaI ACNGT 1 cut(s) 242
TaiI ACGT 1 cut(s) 92
TaqI TCGA 4 cut(s) 98, 151, 190, 256
TasI AATT 3 cut(s) 36, 276, 596
TauI GCSGC 1 cut(s) 346
TfiI GAWTC 2 cut(s) 311, 323
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TseFI GTSAC 3 cut(s) 85, 196, 428
TseI GCWGC 2 cut(s) 21, 168
Tsp45I GTSAC 3 cut(s) 85, 196, 428
TspDTI ATGAA 1 cut(s) 394
TspGWI ACGGA 1 cut(s) 530
VpaK11BI GGWCC 1 cut(s) 386
XcmI CCANNNNNNNNNTGG 1 cut(s) 588
XmnI GAANNNNTTC 1 cut(s) 265
XspI CTAG 2 cut(s) 213, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.