Rh2CG106200

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0010995
Physical Location & Seq
Forward (+)
9168981 .. 9171675
2695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG106200.1

Sequence Viewer

Length: 630 bp
ATGGATGAGCATCCTGGTAGCAGCAAGTTGACTGGAATTAGGCAGATTGTTAAGTTCAAAGAAATCCTGCAGAGATGGCAATCTGTCACACTTGGCTCGAAGGGGAATAGCCCCCGAAGAGGAGGCGGTCCTCATTCTCGTGCTGATAGAATGTTAGTGGGAAGTAGCCCTCAATCCCATTCTGATCGAAGGGTGACGAGGGACAGTTCCATTTCCCATTCTGGTCGAAGGGTGAGAGTGGGCAGTCCTAGTCCTAGTCCCCTTTCTGAGCAAAGCAGTCCCTTATCTAGTCGAGCCCTTTCACCAGCGATTAGCAGGAGGCTCACAAATGTTATTTGTGATTCGGATGAGGAGTCATGCGCAAGTCCCGAGCCGCCACCTGATGTCCCTGAAGGGTATTTGGCGGTTTATGTTGGACCAGAGCTTCGGAGGTTCATCATTCCCACAAGCTATCTTAGTCACAACCTTTTTAAAGTGTTACTGGAGAAGGCTGAAGAGGAGTTTGGATTTGATCATAACGGGGGGCTCACAATTCCATGTGAGACAGAGACCTTCAAGTACCTCTTGAAGTGCATGGAGAACCATCAGAAAGCTCACCCTGATGAAACCCCAGGTAACTACACATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

209

Amino Acids

23.08

Weight (kDa)

7.75

Isoelectric Point (pI)

76.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 115 - 191 3.3e-26 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010995)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43120 AT5G20810 AT5G20810
fragaria_vesca FvH4_1g09280 FvH4_1g09280
malus_domestica MD02G1100000.v1.1 MD15G1222900.v1.1
prunus_persica Prupe.7G192900_v2.0.a1
pyrus_communis pycom02g07800 pycom15g19700
rosa_chinensis RchiOBHm_Chr2g0095841
rosa_laevigata RLG00000016599
rosa_multiflora Rmu_sc0000496.1_g000006
rosa_roxburghii Rroxscaffold_2G00146040
rosa_rugosa Rorug02G0053200
rosa_samantha Rh2AG102300 Rh2BG103700 Rh2CG106200 Rh2DG103800
rosa_wichuraiana Rw2G007780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 361
AciI CCGC 3 cut(s) 126, 374, 404
AcuI CTGAAG 2 cut(s) 411, 513
AfaI GTAC 1 cut(s) 560
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 3 cut(s) 58, 556, 568
AjnI CCWGG 2 cut(s) 13, 610
AjuI GAANNNNNNNTTGG 2 cut(s) 486, 518
AluBI AGCT 3 cut(s) 424, 450, 593
AluI AGCT 3 cut(s) 424, 450, 593
Alw26I GTCTC 2 cut(s) 536, 542
Ama87I CYCGRG 1 cut(s) 368
ApeKI GCWGC 1 cut(s) 21
ArsI GACNNNNNNTTYG 2 cut(s) 408, 440
AspLEI GCGC 1 cut(s) 362
AspS9I GGNCC 2 cut(s) 128, 416
AsuHPI GGTGA 4 cut(s) 205, 244, 294, 587
AvaI CYCGRG 1 cut(s) 368
AvaII GGWCC 2 cut(s) 128, 416
BanII GRGCYC 2 cut(s) 298, 528
BauI CACGAG 1 cut(s) 138
BbvI GCAGC 1 cut(s) 33
BccI CCATC 2 cut(s) 69, 591
BciT130I CCWGG 2 cut(s) 15, 612
BclI TGATCA 1 cut(s) 511
BcoDI GTCTC 2 cut(s) 536, 542
BfaI CTAG 3 cut(s) 249, 255, 288
BfmI CTRYAG 1 cut(s) 68
BisI GCNGC 2 cut(s) 22, 374
BlsI GCNGC 2 cut(s) 23, 375
Bme1390I CCNGG 2 cut(s) 15, 612
Bme18I GGWCC 2 cut(s) 128, 416
BmeT110I CYCGRG 1 cut(s) 368
BmgT120I GGNCC 2 cut(s) 128, 416
BmrFI CCNGG 2 cut(s) 15, 612
BmsI GCATC 1 cut(s) 19
BpmI CTGGAG 1 cut(s) 503
BsaBI GATNNNNATC 2 cut(s) 9, 79
BsaI GGTCTC 1 cut(s) 542
BsaJI CCNNGG 1 cut(s) 610
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse1I ACTGG 2 cut(s) 37, 486
Bse8I GATNNNNATC 2 cut(s) 9, 79
BseBI CCWGG 2 cut(s) 15, 612
BseDI CCNNGG 1 cut(s) 610
BseGI GGATG 3 cut(s) 10, 10, 352
BseJI GATNNNNATC 2 cut(s) 9, 79
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMII CTCAG 1 cut(s) 258
BseNI ACTGG 2 cut(s) 37, 486
BseRI GAGGAG 3 cut(s) 135, 365, 512
BseXI GCAGC 1 cut(s) 33
BsiHKCI CYCGRG 1 cut(s) 368
BslFI GGGAC 5 cut(s) 215, 243, 264, 351, 371
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 2 cut(s) 536, 542
BsmFI GGGAC 5 cut(s) 215, 243, 264, 351, 371
Bso31I GGTCTC 1 cut(s) 542
BsoBI CYCGRG 1 cut(s) 368
Bsp1286I GDGCHC 2 cut(s) 298, 528
Bsp143I GATC 2 cut(s) 184, 511
BspACI CCGC 3 cut(s) 126, 374, 404
BspCNI CTCAG 1 cut(s) 259
BspMAI CTGCAG 1 cut(s) 72
BspTNI GGTCTC 1 cut(s) 542
BsrI ACTGG 2 cut(s) 37, 486
BssECI CCNNGG 1 cut(s) 610
BssMI GATC 2 cut(s) 184, 511
BssSI CACGAG 1 cut(s) 138
Bst2BI CACGAG 1 cut(s) 138
Bst2UI CCWGG 2 cut(s) 15, 612
Bst4CI ACNGT 1 cut(s) 206
Bst6I CTCTTC 2 cut(s) 112, 489
BstDEI CTNAG 2 cut(s) 267, 455
BstF5I GGATG 3 cut(s) 10, 10, 352
BstHHI GCGC 1 cut(s) 362
BstKTI GATC 2 cut(s) 187, 514
BstMAI GTCTC 2 cut(s) 536, 542
BstMBI GATC 2 cut(s) 184, 511
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstNI CCWGG 2 cut(s) 15, 612
BstSCI CCNGG 2 cut(s) 13, 610
BstSFI CTRYAG 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 33
BtsCI GGATG 3 cut(s) 10, 10, 352
CfoI GCGC 1 cut(s) 362
Cfr13I GGNCC 2 cut(s) 128, 416
Csp6I GTAC 1 cut(s) 559
CviAII CATG 3 cut(s) 357, 537, 574
CviQI GTAC 1 cut(s) 559
DdeI CTNAG 2 cut(s) 267, 455
DpnI GATC 2 cut(s) 186, 513
DpnII GATC 2 cut(s) 184, 511
DraI TTTAAA 1 cut(s) 472
Eam1104I CTCTTC 2 cut(s) 112, 489
EarI CTCTTC 2 cut(s) 112, 489
Eco24I GRGCYC 2 cut(s) 298, 528
Eco31I GGTCTC 1 cut(s) 542
Eco47I GGWCC 2 cut(s) 128, 416
Eco57I CTGAAG 2 cut(s) 411, 513
Eco88I CYCGRG 1 cut(s) 368
EcoRII CCWGG 2 cut(s) 13, 610
EcoT38I GRGCYC 2 cut(s) 298, 528
FaeI CATG 3 cut(s) 360, 540, 577
FaiI YATR 6 cut(s) 358, 411, 516, 538, 575, 628
FalI AAGNNNNNCTT 2 cut(s) 548, 580
FaqI GGGAC 5 cut(s) 215, 243, 264, 351, 371
FatI CATG 3 cut(s) 356, 536, 573
FbaI TGATCA 1 cut(s) 511
Fnu4HI GCNGC 2 cut(s) 22, 374
FokI GGATG 2 cut(s) 17, 359
FriOI GRGCYC 2 cut(s) 298, 528
Fsp4HI GCNGC 2 cut(s) 22, 374
FspBI CTAG 3 cut(s) 249, 255, 288
FspI TGCGCA 1 cut(s) 361
GlaI GCGC 1 cut(s) 361
GluI GCNGC 2 cut(s) 22, 374
GsuI CTGGAG 1 cut(s) 503
HhaI GCGC 1 cut(s) 362
Hin1II CATG 3 cut(s) 360, 540, 577
Hin6I GCGC 1 cut(s) 360
HinP1I GCGC 1 cut(s) 360
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 2 cut(s) 341, 353
HphI GGTGA 4 cut(s) 205, 244, 294, 587
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 5 cut(s) 184, 268, 346, 429, 588
Hpy188III TCNNGA 2 cut(s) 368, 565
Hpy8I GTNNAC 1 cut(s) 30
HpyAV CCTTC 6 cut(s) 94, 183, 222, 386, 481, 562
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4V TGCA 2 cut(s) 70, 573
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpyF3I CTNAG 2 cut(s) 267, 455
Hsp92II CATG 3 cut(s) 360, 540, 577
HspAI GCGC 1 cut(s) 360
Ksp22I TGATCA 1 cut(s) 511
Kzo9I GATC 2 cut(s) 184, 511
Lsp1109I GCAGC 1 cut(s) 33
LweI GCATC 1 cut(s) 19
MaeI CTAG 3 cut(s) 249, 255, 288
MaeIII GTNAC 5 cut(s) 85, 193, 458, 477, 614
MalI GATC 2 cut(s) 186, 513
MboI GATC 2 cut(s) 184, 511
MboII GAAGA 2 cut(s) 129, 506
MhlI GDGCHC 2 cut(s) 298, 528
MluCI AATT 2 cut(s) 36, 531
MlyI GAGTC 1 cut(s) 362
MmeI TCCRAC 1 cut(s) 394
MseI TTAA 2 cut(s) 51, 471
MslI CAYNNNNRTG 2 cut(s) 138, 600
MspR9I CCNGG 2 cut(s) 15, 612
MvaI CCWGG 2 cut(s) 15, 612
MwoI GCNNNNNNNGC 1 cut(s) 76
NdeII GATC 2 cut(s) 184, 511
NlaIII CATG 3 cut(s) 360, 540, 577
NmuCI GTSAC 3 cut(s) 85, 193, 458
NsbI TGCGCA 1 cut(s) 361
PfeI GAWTC 1 cut(s) 341
PkrI GCNGC 2 cut(s) 23, 375
PleI GAGTC 1 cut(s) 361
PpsI GAGTC 1 cut(s) 361
Psp6I CCWGG 2 cut(s) 13, 610
PspGI CCWGG 2 cut(s) 13, 610
PspPI GGNCC 2 cut(s) 128, 416
PstI CTGCAG 1 cut(s) 72
RsaI GTAC 1 cut(s) 560
RsaNI GTAC 1 cut(s) 559
RseI CAYNNNNRTG 2 cut(s) 138, 600
SaqAI TTAA 2 cut(s) 51, 471
SatI GCNGC 2 cut(s) 22, 374
Sau3AI GATC 2 cut(s) 184, 511
Sau96I GGNCC 2 cut(s) 128, 416
SchI GAGTC 1 cut(s) 362
ScrFI CCNGG 2 cut(s) 15, 612
SduI GDGCHC 2 cut(s) 298, 528
SetI ASST 9 cut(s) 382, 426, 434, 452, 468, 554, 564, 595, 616
SfaNI GCATC 1 cut(s) 19
SfcI CTRYAG 1 cut(s) 68
SinI GGWCC 2 cut(s) 128, 416
SmiMI CAYNNNNRTG 2 cut(s) 138, 600
Sse9I AATT 2 cut(s) 36, 531
SsiI CCGC 3 cut(s) 126, 374, 404
SspMI CTAG 3 cut(s) 249, 255, 288
StyD4I CCNGG 2 cut(s) 13, 610
TaaI ACNGT 1 cut(s) 206
TaqI TCGA 4 cut(s) 98, 187, 226, 292
TasI AATT 2 cut(s) 36, 531
TauI GCSGC 1 cut(s) 376
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 2 cut(s) 51, 471
Tru9I TTAA 2 cut(s) 51, 471
TseFI GTSAC 3 cut(s) 85, 193, 458
TseI GCWGC 1 cut(s) 21
Tsp45I GTSAC 3 cut(s) 85, 193, 458
TspDTI ATGAA 2 cut(s) 424, 618
VpaK11BI GGWCC 2 cut(s) 128, 416
XspI CTAG 3 cut(s) 249, 255, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.