RLG00000016599

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0010995
Physical Location & Seq
Forward (+)
8114455 .. 8115834
1380 bp
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UTR
Exon/CDS
Intron
RLM00000016599

Sequence Viewer

Length: 672 bp
ATGTCCTCCTCCCTCCTCAATCCTCAGCTAGCAATGGATGAGCATCCTGGTAGCAGCAAGTTGACTGGAATTAGGCAGATTGTTAAGTTCAAAGAAATCCTGCAGAGATGGCAATCTGTCACACTTGGCTCGAAGGGGAATAGCCCCCGAAGAGGAGGCAGTCCTCATTCTCGTGCTGATAGAATGTTAGTGGGAAGTAGCCCTCAATCCCATTCTGATCGAAGGGTGACGAGGGACTGCTCCATTTCCCATTCTGGTCGAAGGGTGAGAGTGGCCAGTCCTAGTCCTAGTCCCCTTTCTGAGCAAAGTAGTCCCTTATCTAGTCGAGCCCTTTCACCAGCGATTAGCAGGAGGCTCACAAATGTTATTTGTGATTCGGACGAGGAGTCATGCGCAAGTCCTGAGCCGCCACCTGATGTCCCTGAAGGGTATTTGGCGGTTTATGTTGGACCAGAGCTTCGGAGGTTCATCATTCCCACAAGCTACCTTAGTCACAACCTTTTTAAAGTGTTACTGGAGAAGGCTGAAGAGGAGTTTGGATTTGATCATAACGGGGGGCTCACAATTCCATGTGAGACGGAGACCTTCAAGTACCTCTTGAAGTGCATGGAGAACCATCAGAAAGCTCACCCTGATGAAACCCCAGCTGGAGCGTGGAAACTCATTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

224

Amino Acids

24.63

Weight (kDa)

7.71

Isoelectric Point (pI)

79.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 126 - 202 3.9e-26 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010995)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43120 AT5G20810 AT5G20810
fragaria_vesca FvH4_1g09280 FvH4_1g09280
malus_domestica MD02G1100000.v1.1 MD15G1222900.v1.1
prunus_persica Prupe.7G192900_v2.0.a1
pyrus_communis pycom02g07800 pycom15g19700
rosa_chinensis RchiOBHm_Chr2g0095841
rosa_laevigata RLG00000016599
rosa_multiflora Rmu_sc0000496.1_g000006
rosa_roxburghii Rroxscaffold_2G00146040
rosa_rugosa Rorug02G0053200
rosa_samantha Rh2AG102300 Rh2BG103700 Rh2CG106200 Rh2DG103800
rosa_wichuraiana Rw2G007780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 394
AciI CCGC 2 cut(s) 407, 437
AcoI YGGCCR 1 cut(s) 273
AcuI CTGAAG 2 cut(s) 444, 546
AfaI GTAC 1 cut(s) 593
AfiI CCNNNNNNNGG 1 cut(s) 152
AgsI TTSAA 4 cut(s) 91, 589, 601, 668
AhdI GACNNNNNGTC 1 cut(s) 385
AjnI CCWGG 1 cut(s) 46
AjuI GAANNNNNNNTTGG 2 cut(s) 519, 551
AluBI AGCT 5 cut(s) 28, 457, 483, 626, 647
AluI AGCT 5 cut(s) 28, 457, 483, 626, 647
Alw26I GTCTC 2 cut(s) 569, 575
AoxI GGCC 1 cut(s) 273
ApeKI GCWGC 1 cut(s) 54
ArsI GACNNNNNNTTYG 2 cut(s) 441, 473
AspLEI GCGC 1 cut(s) 395
AspS9I GGNCC 1 cut(s) 449
AsuHPI GGTGA 4 cut(s) 238, 277, 327, 620
AsuNHI GCTAGC 1 cut(s) 28
AvaII GGWCC 1 cut(s) 449
BalI TGGCCA 1 cut(s) 275
BanII GRGCYC 2 cut(s) 331, 561
BauI CACGAG 1 cut(s) 171
BbvCI CCTCAGC 1 cut(s) 24
BbvI GCAGC 1 cut(s) 66
BccI CCATC 2 cut(s) 102, 624
BciT130I CCWGG 1 cut(s) 48
BclI TGATCA 1 cut(s) 544
BcoDI GTCTC 2 cut(s) 569, 575
BfaI CTAG 4 cut(s) 29, 282, 288, 321
BfmI CTRYAG 1 cut(s) 101
BisI GCNGC 2 cut(s) 55, 407
BlsI GCNGC 2 cut(s) 56, 408
Bme1390I CCNGG 1 cut(s) 48
Bme18I GGWCC 1 cut(s) 449
BmeRI GACNNNNNGTC 1 cut(s) 385
BmgT120I GGNCC 1 cut(s) 449
BmrFI CCNGG 1 cut(s) 48
BmsI GCATC 1 cut(s) 52
BmtI GCTAGC 1 cut(s) 32
BpmI CTGGAG 2 cut(s) 536, 669
Bpu10I CCTNAGC 2 cut(s) 24, 402
BsaBI GATNNNNATC 2 cut(s) 42, 112
BsaI GGTCTC 1 cut(s) 575
Bsc4I CCNNNNNNNGG 1 cut(s) 152
Bse1I ACTGG 3 cut(s) 70, 276, 519
Bse3DI GCAATG 1 cut(s) 39
Bse8I GATNNNNATC 2 cut(s) 42, 112
BseBI CCWGG 1 cut(s) 48
BseGI GGATG 2 cut(s) 43, 43
BseJI GATNNNNATC 2 cut(s) 42, 112
BseLI CCNNNNNNNGG 1 cut(s) 152
BseMI GCAATG 1 cut(s) 39
BseMII CTCAG 3 cut(s) 38, 291, 393
BseNI ACTGG 3 cut(s) 70, 276, 519
BseRI GAGGAG 4 cut(s) 5, 168, 398, 545
BseXI GCAGC 1 cut(s) 66
BseYI CCCAGC 1 cut(s) 643
BshFI GGCC 1 cut(s) 275
BslFI GGGAC 4 cut(s) 248, 276, 297, 404
BslI CCNNNNNNNGG 1 cut(s) 152
BsmAI GTCTC 2 cut(s) 569, 575
BsmBI CGTCTC 1 cut(s) 569
BsmFI GGGAC 4 cut(s) 248, 276, 297, 404
BsnI GGCC 1 cut(s) 275
Bso31I GGTCTC 1 cut(s) 575
Bsp1286I GDGCHC 2 cut(s) 331, 561
Bsp143I GATC 2 cut(s) 217, 544
BspACI CCGC 2 cut(s) 407, 437
BspANI GGCC 1 cut(s) 275
BspCNI CTCAG 3 cut(s) 37, 292, 394
BspMAI CTGCAG 1 cut(s) 105
BspOI GCTAGC 1 cut(s) 32
BspTNI GGTCTC 1 cut(s) 575
BsrDI GCAATG 1 cut(s) 39
BsrI ACTGG 3 cut(s) 70, 276, 519
BssMI GATC 2 cut(s) 217, 544
BssSI CACGAG 1 cut(s) 171
Bst2BI CACGAG 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 48
Bst6I CTCTTC 2 cut(s) 145, 522
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 4 cut(s) 24, 300, 402, 488
BstF5I GGATG 2 cut(s) 43, 43
BstHHI GCGC 1 cut(s) 395
BstKTI GATC 2 cut(s) 220, 547
BstMAI GTCTC 2 cut(s) 569, 575
BstMBI GATC 2 cut(s) 217, 544
BstMWI GCNNNNNNNGC 1 cut(s) 109
BstNI CCWGG 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 46
BstSFI CTRYAG 1 cut(s) 101
BstV1I GCAGC 1 cut(s) 66
BsuRI GGCC 1 cut(s) 275
BtsCI GGATG 2 cut(s) 43, 43
Cac8I GCNNGC 1 cut(s) 30
CfoI GCGC 1 cut(s) 395
Cfr13I GGNCC 1 cut(s) 449
Csp6I GTAC 1 cut(s) 592
CviAII CATG 3 cut(s) 390, 570, 607
CviQI GTAC 1 cut(s) 592
DdeI CTNAG 4 cut(s) 24, 300, 402, 488
DpnI GATC 2 cut(s) 219, 546
DpnII GATC 2 cut(s) 217, 544
DraI TTTAAA 1 cut(s) 505
DriI GACNNNNNGTC 1 cut(s) 385
EaeI YGGCCR 1 cut(s) 273
Eam1104I CTCTTC 2 cut(s) 145, 522
Eam1105I GACNNNNNGTC 1 cut(s) 385
EarI CTCTTC 2 cut(s) 145, 522
Eco24I GRGCYC 2 cut(s) 331, 561
Eco31I GGTCTC 1 cut(s) 575
Eco47I GGWCC 1 cut(s) 449
Eco57I CTGAAG 2 cut(s) 444, 546
EcoRII CCWGG 1 cut(s) 46
EcoT38I GRGCYC 2 cut(s) 331, 561
Esp3I CGTCTC 1 cut(s) 569
FaeI CATG 3 cut(s) 393, 573, 610
FaiI YATR 5 cut(s) 391, 444, 549, 571, 608
FalI AAGNNNNNCTT 2 cut(s) 581, 613
FaqI GGGAC 4 cut(s) 248, 276, 297, 404
FatI CATG 3 cut(s) 389, 569, 606
FbaI TGATCA 1 cut(s) 544
Fnu4HI GCNGC 2 cut(s) 55, 407
FokI GGATG 2 cut(s) 30, 50
FriOI GRGCYC 2 cut(s) 331, 561
Fsp4HI GCNGC 2 cut(s) 55, 407
FspBI CTAG 4 cut(s) 29, 282, 288, 321
FspI TGCGCA 1 cut(s) 394
GlaI GCGC 1 cut(s) 394
GluI GCNGC 2 cut(s) 55, 407
GsaI CCCAGC 1 cut(s) 647
GsuI CTGGAG 2 cut(s) 536, 669
HaeIII GGCC 1 cut(s) 275
HhaI GCGC 1 cut(s) 395
Hin1II CATG 3 cut(s) 393, 573, 610
Hin6I GCGC 1 cut(s) 393
HinP1I GCGC 1 cut(s) 393
HincII GTYRAC 1 cut(s) 63
HindII GTYRAC 1 cut(s) 63
HinfI GANTC 2 cut(s) 374, 386
HphI GGTGA 4 cut(s) 238, 277, 327, 620
Hpy166II GTNNAC 1 cut(s) 63
Hpy188I TCNGA 5 cut(s) 217, 301, 379, 462, 621
Hpy188III TCNNGA 2 cut(s) 401, 598
Hpy8I GTNNAC 1 cut(s) 63
HpyAV CCTTC 6 cut(s) 127, 216, 255, 419, 514, 595
HpyCH4V TGCA 2 cut(s) 103, 606
HpyF10VI GCNNNNNNNGC 1 cut(s) 109
HpyF3I CTNAG 4 cut(s) 24, 300, 402, 488
Hsp92II CATG 3 cut(s) 393, 573, 610
HspAI GCGC 1 cut(s) 393
Ksp22I TGATCA 1 cut(s) 544
Kzo9I GATC 2 cut(s) 217, 544
LmnI GCTCC 2 cut(s) 245, 650
Lsp1109I GCAGC 1 cut(s) 66
LweI GCATC 1 cut(s) 52
MaeI CTAG 4 cut(s) 29, 282, 288, 321
MaeIII GTNAC 4 cut(s) 118, 226, 491, 510
MalI GATC 2 cut(s) 219, 546
MboI GATC 2 cut(s) 217, 544
MboII GAAGA 2 cut(s) 162, 539
MhlI GDGCHC 2 cut(s) 331, 561
MlsI TGGCCA 1 cut(s) 275
MluCI AATT 2 cut(s) 69, 564
MluNI TGGCCA 1 cut(s) 275
MlyI GAGTC 1 cut(s) 395
MmeI TCCRAC 1 cut(s) 427
Mox20I TGGCCA 1 cut(s) 275
MscI TGGCCA 1 cut(s) 275
MseI TTAA 2 cut(s) 84, 504
MslI CAYNNNNRTG 2 cut(s) 171, 633
Msp20I TGGCCA 1 cut(s) 275
MspA1I CMGCKG 1 cut(s) 647
MspR9I CCNGG 1 cut(s) 48
MvaI CCWGG 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 109
NdeII GATC 2 cut(s) 217, 544
NheI GCTAGC 1 cut(s) 28
NlaIII CATG 3 cut(s) 393, 573, 610
NmuCI GTSAC 3 cut(s) 118, 226, 491
NsbI TGCGCA 1 cut(s) 394
PfeI GAWTC 1 cut(s) 374
PkrI GCNGC 2 cut(s) 56, 408
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
Psp6I CCWGG 1 cut(s) 46
PspFI CCCAGC 1 cut(s) 643
PspGI CCWGG 1 cut(s) 46
PspPI GGNCC 1 cut(s) 449
PstI CTGCAG 1 cut(s) 105
PvuII CAGCTG 1 cut(s) 647
RsaI GTAC 1 cut(s) 593
RsaNI GTAC 1 cut(s) 592
RseI CAYNNNNRTG 2 cut(s) 171, 633
SaqAI TTAA 2 cut(s) 84, 504
SatI GCNGC 2 cut(s) 55, 407
Sau3AI GATC 2 cut(s) 217, 544
Sau96I GGNCC 1 cut(s) 449
SchI GAGTC 1 cut(s) 395
ScrFI CCNGG 1 cut(s) 48
SduI GDGCHC 2 cut(s) 331, 561
SfaNI GCATC 1 cut(s) 52
SfcI CTRYAG 1 cut(s) 101
SinI GGWCC 1 cut(s) 449
SmiMI CAYNNNNRTG 2 cut(s) 171, 633
Sse9I AATT 2 cut(s) 69, 564
SsiI CCGC 2 cut(s) 407, 437
SspMI CTAG 4 cut(s) 29, 282, 288, 321
StyD4I CCNGG 1 cut(s) 46
TaqI TCGA 4 cut(s) 131, 220, 259, 325
TasI AATT 2 cut(s) 69, 564
TauI GCSGC 1 cut(s) 409
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 2 cut(s) 84, 504
Tru9I TTAA 2 cut(s) 84, 504
TseFI GTSAC 3 cut(s) 118, 226, 491
TseI GCWGC 1 cut(s) 54
Tsp45I GTSAC 3 cut(s) 118, 226, 491
TspDTI ATGAA 2 cut(s) 457, 651
TspGWI ACGGA 1 cut(s) 593
VpaK11BI GGWCC 1 cut(s) 449
XcmI CCANNNNNNNNNTGG 1 cut(s) 651
XspI CTAG 4 cut(s) 29, 282, 288, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.