pycom02g07800

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0010995
Physical Location & Seq
Forward (+)
5483897 .. 5484866
970 bp
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UTR
Exon/CDS
Intron
pycom02g07800.1

Sequence Viewer

Length: 483 bp
ATGTCCTCCCCCTCCTCAGCAATTGTGGTAAAACCTGTAGCAATGAATGAAAATGGTGGCACCAAGTTGACCGGAATCAGGCAGATTGTCAAGTTCAAAGAAATTCTGCAGAAGTGGCAAGCTGTCACGCTTGGCTCGAGGGCAAACAGCCCCCGAGCCAAAAGTAGTCCCCATTCTGAAAAAAGAGGAGGGGAGAGCACCACTCCCCGTTCTGATCGAGGCCATGGGGGCATTTCACCGGCAATTAGCAAGAGGCTAACAAATGTTCTTTGTGATTCCGACGAGGATATATGCCACAGTCCCGAACCGCCACCTGATGTCCCCCAAGGGTATTTGGCGGTTTATGTTGGACCGGAGCTTCGGAGGTTCATCATTCCCACTAGCTACCTCAGTCACTCCCTTTTTAAAGTATTGCTGGAGAAGGCTGAGGAGGAATATGGGTTTGATCGATCCAAATGGCGGCGGGCTCACAATCCCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

161

Amino Acids

17.7

Weight (kDa)

9.48

Isoelectric Point (pI)

65.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 88 - 151 2.4e-16 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010995)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43120 AT5G20810 AT5G20810
fragaria_vesca FvH4_1g09280 FvH4_1g09280
malus_domestica MD02G1100000.v1.1 MD15G1222900.v1.1
prunus_persica Prupe.7G192900_v2.0.a1
pyrus_communis pycom02g07800 pycom15g19700
rosa_chinensis RchiOBHm_Chr2g0095841
rosa_laevigata RLG00000016599
rosa_multiflora Rmu_sc0000496.1_g000006
rosa_roxburghii Rroxscaffold_2G00146040
rosa_rugosa Rorug02G0053200
rosa_samantha Rh2AG102300 Rh2BG103700 Rh2CG106200 Rh2DG103800
rosa_wichuraiana Rw2G007780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 59
AciI CCGC 4 cut(s) 308, 338, 460, 463
AclWI GGATC 1 cut(s) 444
AcsI RAATTY 1 cut(s) 102
AfiI CCNNNNNNNGG 2 cut(s) 78, 459
AgsI TTSAA 1 cut(s) 97
AluBI AGCT 3 cut(s) 122, 358, 384
AluI AGCT 3 cut(s) 122, 358, 384
Alw21I GWGCWC 1 cut(s) 200
AlwI GGATC 1 cut(s) 444
Ama87I CYCGRG 2 cut(s) 136, 153
AoxI GGCC 1 cut(s) 220
ApoI RAATTY 1 cut(s) 102
ArsI GACNNNNNNTTYG 2 cut(s) 342, 374
AspS9I GGNCC 1 cut(s) 350
AsuHPI GGTGA 1 cut(s) 228
AvaI CYCGRG 2 cut(s) 136, 153
AvaII GGWCC 1 cut(s) 350
BanI GGYRCC 1 cut(s) 59
BanII GRGCYC 1 cut(s) 469
Bbv12I GWGCWC 1 cut(s) 200
BbvCI CCTCAGC 2 cut(s) 16, 426
BfaI CTAG 1 cut(s) 381
BfmI CTRYAG 2 cut(s) 36, 107
BglI GCCNNNNNGGC 1 cut(s) 228
BisI GCNGC 1 cut(s) 461
BlsI GCNGC 1 cut(s) 462
Bme18I GGWCC 1 cut(s) 350
BmeT110I CYCGRG 2 cut(s) 136, 153
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 1 cut(s) 61
BplI GAGNNNNNCTC 2 cut(s) 187, 219
BpmI CTGGAG 1 cut(s) 437
Bpu10I CCTNAGC 2 cut(s) 16, 426
Bsa29I ATCGAT 1 cut(s) 448
BsaJI CCNNGG 2 cut(s) 223, 325
BsaWI WCCGGW 2 cut(s) 71, 352
Bsc4I CCNNNNNNNGG 2 cut(s) 78, 459
Bse118I RCCGGY 1 cut(s) 238
Bse3DI GCAATG 1 cut(s) 48
BseCI ATCGAT 1 cut(s) 448
BseDI CCNNGG 2 cut(s) 223, 325
BseLI CCNNNNNNNGG 2 cut(s) 78, 459
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 3 cut(s) 30, 403, 417
BseRI GAGGAG 3 cut(s) 4, 201, 443
BshFI GGCC 1 cut(s) 222
BshNI GGYRCC 1 cut(s) 59
BshVI ATCGAT 1 cut(s) 448
BsiHKAI GWGCWC 1 cut(s) 200
BsiHKCI CYCGRG 2 cut(s) 136, 153
BsiSI CCGG 3 cut(s) 72, 239, 353
BslFI GGGAC 3 cut(s) 153, 285, 305
BslI CCNNNNNNNGG 2 cut(s) 78, 459
BsmFI GGGAC 3 cut(s) 153, 285, 305
BsnI GGCC 1 cut(s) 222
BsoBI CYCGRG 2 cut(s) 136, 153
Bsp1286I GDGCHC 2 cut(s) 200, 469
Bsp143I GATC 3 cut(s) 214, 445, 449
Bsp19I CCATGG 1 cut(s) 223
BspACI CCGC 4 cut(s) 308, 338, 460, 463
BspANI GGCC 1 cut(s) 222
BspCNI CTCAG 3 cut(s) 29, 402, 418
BspDI ATCGAT 1 cut(s) 448
BspLI GGNNCC 1 cut(s) 61
BspMAI CTGCAG 1 cut(s) 111
BspPI GGATC 1 cut(s) 444
BspT107I GGYRCC 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 48
BsrFI RCCGGY 1 cut(s) 238
BssAI RCCGGY 1 cut(s) 238
BssECI CCNNGG 2 cut(s) 223, 325
BssMI GATC 3 cut(s) 214, 445, 449
BssT1I CCWWGG 2 cut(s) 223, 325
Bst4CI ACNGT 1 cut(s) 299
BstC8I GCNNGC 2 cut(s) 120, 465
BstDEI CTNAG 3 cut(s) 16, 389, 426
BstDSI CCRYGG 1 cut(s) 223
BstKTI GATC 3 cut(s) 217, 448, 452
BstMBI GATC 3 cut(s) 214, 445, 449
BstMWI GCNNNNNNNGC 2 cut(s) 115, 228
BstSFI CTRYAG 2 cut(s) 36, 107
Bsu15I ATCGAT 1 cut(s) 448
BsuRI GGCC 1 cut(s) 222
BsuTUI ATCGAT 1 cut(s) 448
BtgI CCRYGG 1 cut(s) 223
Cac8I GCNNGC 2 cut(s) 120, 465
Cfr10I RCCGGY 1 cut(s) 238
Cfr13I GGNCC 1 cut(s) 350
ClaI ATCGAT 1 cut(s) 448
CviAII CATG 2 cut(s) 224, 478
DdeI CTNAG 3 cut(s) 16, 389, 426
DpnI GATC 3 cut(s) 216, 447, 451
DpnII GATC 3 cut(s) 214, 445, 449
DraI TTTAAA 1 cut(s) 406
Eco130I CCWWGG 2 cut(s) 223, 325
Eco24I GRGCYC 1 cut(s) 469
Eco47I GGWCC 1 cut(s) 350
Eco88I CYCGRG 2 cut(s) 136, 153
EcoT14I CCWWGG 2 cut(s) 223, 325
EcoT38I GRGCYC 1 cut(s) 469
ErhI CCWWGG 2 cut(s) 223, 325
FaeI CATG 2 cut(s) 227, 481
FaiI YATR 6 cut(s) 225, 290, 292, 345, 438, 479
FaqI GGGAC 3 cut(s) 153, 285, 305
FatI CATG 2 cut(s) 223, 477
FauI CCCGC 1 cut(s) 456
Fnu4HI GCNGC 1 cut(s) 461
FriOI GRGCYC 1 cut(s) 469
Fsp4HI GCNGC 1 cut(s) 461
FspBI CTAG 1 cut(s) 381
GluI GCNGC 1 cut(s) 461
GsuI CTGGAG 1 cut(s) 437
HaeIII GGCC 1 cut(s) 222
HapII CCGG 3 cut(s) 72, 239, 353
Hin1II CATG 2 cut(s) 227, 481
HincII GTYRAC 1 cut(s) 69
HindII GTYRAC 1 cut(s) 69
HinfI GANTC 2 cut(s) 75, 275
HpaII CCGG 3 cut(s) 72, 239, 353
HphI GGTGA 1 cut(s) 228
Hpy166II GTNNAC 1 cut(s) 69
Hpy188I TCNGA 4 cut(s) 178, 214, 280, 363
Hpy188III TCNNGA 1 cut(s) 302
Hpy8I GTNNAC 1 cut(s) 69
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 1 cut(s) 415
HpyCH4III ACNGT 1 cut(s) 299
HpyCH4V TGCA 1 cut(s) 109
HpyF10VI GCNNNNNNNGC 2 cut(s) 115, 228
HpyF3I CTNAG 3 cut(s) 16, 389, 426
Hsp92II CATG 2 cut(s) 227, 481
Kzo9I GATC 3 cut(s) 214, 445, 449
LmnI GCTCC 1 cut(s) 355
LpnPI CCDG 7 cut(s) 48, 64, 85, 252, 327, 366, 401
MaeI CTAG 1 cut(s) 381
MaeIII GTNAC 2 cut(s) 124, 392
MalI GATC 3 cut(s) 216, 447, 451
MboI GATC 3 cut(s) 214, 445, 449
MfeI CAATTG 1 cut(s) 21
MhlI GDGCHC 2 cut(s) 200, 469
MluCI AATT 3 cut(s) 21, 102, 243
MmeI TCCRAC 2 cut(s) 303, 328
MseI TTAA 1 cut(s) 405
MspI CCGG 3 cut(s) 72, 239, 353
MunI CAATTG 1 cut(s) 21
MwoI GCNNNNNNNGC 2 cut(s) 115, 228
NcoI CCATGG 1 cut(s) 223
NdeII GATC 3 cut(s) 214, 445, 449
NlaIII CATG 2 cut(s) 227, 481
NlaIV GGNNCC 1 cut(s) 61
NmuCI GTSAC 2 cut(s) 124, 392
PaeR7I CTCGAG 1 cut(s) 136
PcsI WCGNNNNNNNCGW 1 cut(s) 134
PfeI GAWTC 2 cut(s) 75, 275
PkrI GCNGC 1 cut(s) 462
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 1 cut(s) 350
PspXI VCTCGAGB 1 cut(s) 136
PstI CTGCAG 1 cut(s) 111
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 1 cut(s) 461
Sau3AI GATC 3 cut(s) 214, 445, 449
Sau96I GGNCC 1 cut(s) 350
SduI GDGCHC 2 cut(s) 200, 469
SetI ASST 7 cut(s) 37, 124, 316, 360, 368, 386, 390
SfcI CTRYAG 2 cut(s) 36, 107
Sfr274I CTCGAG 1 cut(s) 136
SinI GGWCC 1 cut(s) 350
SlaI CTCGAG 1 cut(s) 136
SmlI CTYRAG 1 cut(s) 136
SmoI CTYRAG 1 cut(s) 136
Sse9I AATT 3 cut(s) 21, 102, 243
SsiI CCGC 4 cut(s) 308, 338, 460, 463
SspMI CTAG 1 cut(s) 381
StyI CCWWGG 2 cut(s) 223, 325
TaaI ACNGT 1 cut(s) 299
TaqI TCGA 3 cut(s) 137, 217, 448
TasI AATT 3 cut(s) 21, 102, 243
TauI GCSGC 1 cut(s) 463
TfiI GAWTC 2 cut(s) 75, 275
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TseFI GTSAC 2 cut(s) 124, 392
Tsp45I GTSAC 2 cut(s) 124, 392
TspDTI ATGAA 3 cut(s) 59, 63, 358
VpaK11BI GGWCC 1 cut(s) 350
XapI RAATTY 1 cut(s) 102
XhoI CTCGAG 1 cut(s) 136
XspI CTAG 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.