Rh2BG103700

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0010995
Physical Location & Seq
Forward (+)
8604264 .. 8606958
2695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG103700.1

Sequence Viewer

Length: 639 bp
ATGGATGAGCATCCTGGTAGCAGCAAGTTGACTGGAATTAGGCAGATTGTTAAGTTCAAAGAAATCCTGCAGAGATGGCAATCTGTCACACTTGGCTCGAAGGGGAATAGCCCCCGAAGAGGAGGCGGTCCTCATTCTCGTGCTGATAGAATGTTAGTGGGAAGTAGCCCTCAATCCCATTCTGATCGAAGGGTGACGAGGGACAGTTCCATTTCCCATTCTGGTCGAAGGGTGAGAGTGGGCAGTCCTAGTCCTAGTCCCCTTTCTGAGCAAAGCAGTCCCTTATCTAGTCGAGCCCTTTCACCAGCGATTAGCAGGAGGCTCACAAATGTTATTTGTGATTCGGATGAGGAGTCATGCGCAAGTCCCGAGCCGCCACCTGATGTCCCTGAAGGGTATTTGGCGGTTTATGTTGGACCAGAGCTTCGGAGGTTCATCATTCCCACAAGCTATCTTAGTCACAACCTTTTTAAAGTGTTACTGGAGAAGGCTGAAGAGGAGTTTGGATTTGATCATAACGGGGGGCTCACAATTCCATGTGAGACAGAGACCTTCAAGTACCTCTTGAAGTGCATGGAGAACCATCAGAAAGCTCACCCTGATGAAACCCCAGCTGGAGCATGGAAACTCATTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

212

Amino Acids

23.43

Weight (kDa)

7.75

Isoelectric Point (pI)

78.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 115 - 191 3.4e-26 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010995)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43120 AT5G20810 AT5G20810
fragaria_vesca FvH4_1g09280 FvH4_1g09280
malus_domestica MD02G1100000.v1.1 MD15G1222900.v1.1
prunus_persica Prupe.7G192900_v2.0.a1
pyrus_communis pycom02g07800 pycom15g19700
rosa_chinensis RchiOBHm_Chr2g0095841
rosa_laevigata RLG00000016599
rosa_multiflora Rmu_sc0000496.1_g000006
rosa_roxburghii Rroxscaffold_2G00146040
rosa_rugosa Rorug02G0053200
rosa_samantha Rh2AG102300 Rh2BG103700 Rh2CG106200 Rh2DG103800
rosa_wichuraiana Rw2G007780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 361
AciI CCGC 3 cut(s) 126, 374, 404
AcuI CTGAAG 2 cut(s) 411, 513
AfaI GTAC 1 cut(s) 560
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 4 cut(s) 58, 556, 568, 635
AjnI CCWGG 1 cut(s) 13
AjuI GAANNNNNNNTTGG 2 cut(s) 486, 518
AluBI AGCT 4 cut(s) 424, 450, 593, 614
AluI AGCT 4 cut(s) 424, 450, 593, 614
Alw26I GTCTC 2 cut(s) 536, 542
Ama87I CYCGRG 1 cut(s) 368
ApeKI GCWGC 1 cut(s) 21
ArsI GACNNNNNNTTYG 2 cut(s) 408, 440
AspLEI GCGC 1 cut(s) 362
AspS9I GGNCC 2 cut(s) 128, 416
AsuHPI GGTGA 4 cut(s) 205, 244, 294, 587
AvaI CYCGRG 1 cut(s) 368
AvaII GGWCC 2 cut(s) 128, 416
BanII GRGCYC 2 cut(s) 298, 528
BauI CACGAG 1 cut(s) 138
BbvI GCAGC 1 cut(s) 33
BccI CCATC 2 cut(s) 69, 591
BciT130I CCWGG 1 cut(s) 15
BclI TGATCA 1 cut(s) 511
BcoDI GTCTC 2 cut(s) 536, 542
BfaI CTAG 3 cut(s) 249, 255, 288
BfmI CTRYAG 1 cut(s) 68
BisI GCNGC 2 cut(s) 22, 374
BlsI GCNGC 2 cut(s) 23, 375
Bme1390I CCNGG 1 cut(s) 15
Bme18I GGWCC 2 cut(s) 128, 416
BmeT110I CYCGRG 1 cut(s) 368
BmgT120I GGNCC 2 cut(s) 128, 416
BmrFI CCNGG 1 cut(s) 15
BmsI GCATC 1 cut(s) 19
BpmI CTGGAG 2 cut(s) 503, 636
BsaBI GATNNNNATC 2 cut(s) 9, 79
BsaI GGTCTC 1 cut(s) 542
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse1I ACTGG 2 cut(s) 37, 486
Bse8I GATNNNNATC 2 cut(s) 9, 79
BseBI CCWGG 1 cut(s) 15
BseGI GGATG 3 cut(s) 10, 10, 352
BseJI GATNNNNATC 2 cut(s) 9, 79
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMII CTCAG 1 cut(s) 258
BseNI ACTGG 2 cut(s) 37, 486
BseRI GAGGAG 3 cut(s) 135, 365, 512
BseXI GCAGC 1 cut(s) 33
BseYI CCCAGC 1 cut(s) 610
BsiHKCI CYCGRG 1 cut(s) 368
BslFI GGGAC 5 cut(s) 215, 243, 264, 351, 371
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 2 cut(s) 536, 542
BsmFI GGGAC 5 cut(s) 215, 243, 264, 351, 371
Bso31I GGTCTC 1 cut(s) 542
BsoBI CYCGRG 1 cut(s) 368
Bsp1286I GDGCHC 2 cut(s) 298, 528
Bsp143I GATC 2 cut(s) 184, 511
BspACI CCGC 3 cut(s) 126, 374, 404
BspCNI CTCAG 1 cut(s) 259
BspMAI CTGCAG 1 cut(s) 72
BspTNI GGTCTC 1 cut(s) 542
BsrI ACTGG 2 cut(s) 37, 486
BssMI GATC 2 cut(s) 184, 511
BssSI CACGAG 1 cut(s) 138
Bst2BI CACGAG 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 15
Bst4CI ACNGT 1 cut(s) 206
Bst6I CTCTTC 2 cut(s) 112, 489
BstDEI CTNAG 2 cut(s) 267, 455
BstF5I GGATG 3 cut(s) 10, 10, 352
BstHHI GCGC 1 cut(s) 362
BstKTI GATC 2 cut(s) 187, 514
BstMAI GTCTC 2 cut(s) 536, 542
BstMBI GATC 2 cut(s) 184, 511
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstNI CCWGG 1 cut(s) 15
BstSCI CCNGG 1 cut(s) 13
BstSFI CTRYAG 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 33
BtsCI GGATG 3 cut(s) 10, 10, 352
CfoI GCGC 1 cut(s) 362
Cfr13I GGNCC 2 cut(s) 128, 416
Csp6I GTAC 1 cut(s) 559
CviAII CATG 4 cut(s) 357, 537, 574, 621
CviQI GTAC 1 cut(s) 559
DdeI CTNAG 2 cut(s) 267, 455
DpnI GATC 2 cut(s) 186, 513
DpnII GATC 2 cut(s) 184, 511
DraI TTTAAA 1 cut(s) 472
Eam1104I CTCTTC 2 cut(s) 112, 489
EarI CTCTTC 2 cut(s) 112, 489
Eco24I GRGCYC 2 cut(s) 298, 528
Eco31I GGTCTC 1 cut(s) 542
Eco47I GGWCC 2 cut(s) 128, 416
Eco57I CTGAAG 2 cut(s) 411, 513
Eco88I CYCGRG 1 cut(s) 368
EcoRII CCWGG 1 cut(s) 13
EcoT38I GRGCYC 2 cut(s) 298, 528
FaeI CATG 4 cut(s) 360, 540, 577, 624
FaiI YATR 6 cut(s) 358, 411, 516, 538, 575, 622
FalI AAGNNNNNCTT 2 cut(s) 548, 580
FaqI GGGAC 5 cut(s) 215, 243, 264, 351, 371
FatI CATG 4 cut(s) 356, 536, 573, 620
FbaI TGATCA 1 cut(s) 511
Fnu4HI GCNGC 2 cut(s) 22, 374
FokI GGATG 2 cut(s) 17, 359
FriOI GRGCYC 2 cut(s) 298, 528
Fsp4HI GCNGC 2 cut(s) 22, 374
FspBI CTAG 3 cut(s) 249, 255, 288
FspI TGCGCA 1 cut(s) 361
GlaI GCGC 1 cut(s) 361
GluI GCNGC 2 cut(s) 22, 374
GsaI CCCAGC 1 cut(s) 614
GsuI CTGGAG 2 cut(s) 503, 636
HhaI GCGC 1 cut(s) 362
Hin1II CATG 4 cut(s) 360, 540, 577, 624
Hin6I GCGC 1 cut(s) 360
HinP1I GCGC 1 cut(s) 360
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 2 cut(s) 341, 353
HphI GGTGA 4 cut(s) 205, 244, 294, 587
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 5 cut(s) 184, 268, 346, 429, 588
Hpy188III TCNNGA 2 cut(s) 368, 565
Hpy8I GTNNAC 1 cut(s) 30
HpyAV CCTTC 6 cut(s) 94, 183, 222, 386, 481, 562
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4V TGCA 2 cut(s) 70, 573
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpyF3I CTNAG 2 cut(s) 267, 455
Hsp92II CATG 4 cut(s) 360, 540, 577, 624
HspAI GCGC 1 cut(s) 360
Ksp22I TGATCA 1 cut(s) 511
Kzo9I GATC 2 cut(s) 184, 511
LmnI GCTCC 1 cut(s) 617
Lsp1109I GCAGC 1 cut(s) 33
LweI GCATC 1 cut(s) 19
MaeI CTAG 3 cut(s) 249, 255, 288
MaeIII GTNAC 4 cut(s) 85, 193, 458, 477
MalI GATC 2 cut(s) 186, 513
MboI GATC 2 cut(s) 184, 511
MboII GAAGA 2 cut(s) 129, 506
MhlI GDGCHC 2 cut(s) 298, 528
MluCI AATT 2 cut(s) 36, 531
MlyI GAGTC 1 cut(s) 362
MmeI TCCRAC 1 cut(s) 394
MseI TTAA 2 cut(s) 51, 471
MslI CAYNNNNRTG 2 cut(s) 138, 600
MspA1I CMGCKG 1 cut(s) 614
MspR9I CCNGG 1 cut(s) 15
MvaI CCWGG 1 cut(s) 15
MwoI GCNNNNNNNGC 1 cut(s) 76
NdeII GATC 2 cut(s) 184, 511
NlaIII CATG 4 cut(s) 360, 540, 577, 624
NmuCI GTSAC 3 cut(s) 85, 193, 458
NsbI TGCGCA 1 cut(s) 361
PfeI GAWTC 1 cut(s) 341
PkrI GCNGC 2 cut(s) 23, 375
PleI GAGTC 1 cut(s) 361
PpsI GAGTC 1 cut(s) 361
Psp6I CCWGG 1 cut(s) 13
PspFI CCCAGC 1 cut(s) 610
PspGI CCWGG 1 cut(s) 13
PspPI GGNCC 2 cut(s) 128, 416
PstI CTGCAG 1 cut(s) 72
PvuII CAGCTG 1 cut(s) 614
RsaI GTAC 1 cut(s) 560
RsaNI GTAC 1 cut(s) 559
RseI CAYNNNNRTG 2 cut(s) 138, 600
SaqAI TTAA 2 cut(s) 51, 471
SatI GCNGC 2 cut(s) 22, 374
Sau3AI GATC 2 cut(s) 184, 511
Sau96I GGNCC 2 cut(s) 128, 416
SchI GAGTC 1 cut(s) 362
ScrFI CCNGG 1 cut(s) 15
SduI GDGCHC 2 cut(s) 298, 528
SetI ASST 9 cut(s) 382, 426, 434, 452, 468, 554, 564, 595, 616
SfaNI GCATC 1 cut(s) 19
SfcI CTRYAG 1 cut(s) 68
SinI GGWCC 2 cut(s) 128, 416
SmiMI CAYNNNNRTG 2 cut(s) 138, 600
Sse9I AATT 2 cut(s) 36, 531
SsiI CCGC 3 cut(s) 126, 374, 404
SspMI CTAG 3 cut(s) 249, 255, 288
StyD4I CCNGG 1 cut(s) 13
TaaI ACNGT 1 cut(s) 206
TaqI TCGA 4 cut(s) 98, 187, 226, 292
TasI AATT 2 cut(s) 36, 531
TauI GCSGC 1 cut(s) 376
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 2 cut(s) 51, 471
Tru9I TTAA 2 cut(s) 51, 471
TseFI GTSAC 3 cut(s) 85, 193, 458
TseI GCWGC 1 cut(s) 21
Tsp45I GTSAC 3 cut(s) 85, 193, 458
TspDTI ATGAA 2 cut(s) 424, 618
VpaK11BI GGWCC 2 cut(s) 128, 416
XcmI CCANNNNNNNNNTGG 1 cut(s) 618
XspI CTAG 3 cut(s) 249, 255, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.