AT3G45760

RNA uridylyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006587
Physical Location & Seq
Reverse (-)
16801996 .. 16804967
2972 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G45760.1

Sequence Viewer

Length: 1425 bp
ATGGACTTTCGAAAAAATCAAGCTGGGGAAAAGAATGTTTCGAGTAAAGGGATTCAAAAGAAAGTGAAGAACACTATGTCCATAGCATCTAAGAGATATAACATTGATAGTTATATCTTACTAGACCTTGATAAGGTATTAGATGATGCCTACAGCTCTTTTCGACCGGTTTCTGCTGATTACAATACTAGGAAGGAATTGGTCAAAAACCTCAATGCTATGGCTATAGATATTTTTGGTAAATCAGAAGAGAGCAGCCCGGTCCTTGAGGCGTATGGCTCTTTTGCGATGAATACGTTTTCCTCACAAAAGGATTTGGATGTATCTATTAACTTTAGTAGCGGAACATCTGAATTTTATCGTGAAAAGAAGCTAGAAATTCTTACAAGATTTGCAACGAAGCTCCGCTCTTTGGAGGGGCAAGGGTTTGTCAGGAATGTTGTACCTATCTTAAGTGCTAGGGTTCCAATTGTCAGATTCTGTGATCAAGGGACTGGTATCGAATGTGATTTGACAGTTGAAAGCAAAGACGGCATTTTAACTTCACAGATCATTCGGATTATATCTCAAATTGATGATAGGTTTCAGAAACTTTGTTTGTTGATTAAGCATTGGGCCAGAGCACATGGGGTTAACAATGCGTCACACAATACCCTGAATTCGATATCTATAACAATGCTAGTCGCTCATCATTTACAGACTCAAAGTCCTCCAATTTTACCTCCATTCTCTACACTATTTAAAGATGGAATCGATCCTCCTATCGTGGAGAAAAGAACACAAAAGTTCTTAAACTGGGGACAACGTAATCAAGAATCTCTTGGTAGACTGTTTGCAACTTTTTTTATTAAGGTTGAGGATTTTACAGACGTGGCTAGAAATTTTGCAAGGGTTTTTAGTGACTACGGAGCCGAAAAGATATACAGCTCCATAAACAGAACAGTAGATGATATATTGGAGTTCCTCAATGGCAAGGTTGCTGGAGAACATCTCACACAAAAGTTGTTTAGCCAACAAACTGTTGTGGAGCCTATTCCTCCTGTGTCGCCACAACAACCTCATAAGAAAAGAGTCTGCTTGGAAAAGGGATACAGAGCTGTAGGAGGGATCAGTCACGGAAGAGAGGAGACTCATGAAACTTCTAGAGGAAAACGAAAAAGGTCTGGTGGAAACTGGGGCTGTAGGTTTAGTGGTGGTGAAGAACCAATGCCTGTGGGTCTGTGGAATGAGTACAGTCGAAGTCTTGATATGCCAACACCACCACCACATTATGATAAACTTCTTTATAAGAAAGTTCCTCTCAAGACTGTTGAACTCATGTGTGGACATTGTAGTGGTGCAAACCGGCACCATCCTCACATTGGTTTAACCAGTCAGAAACCAGAACCACCTTTGATGACTCGCGGTCTACATTCTCAGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTP_transf_2

Protein Analysis

474

Amino Acids

53.41

Weight (kDa)

9.27

Isoelectric Point (pI)

44.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MTPAP-like_central PF22600 43 - 190 5.4e-31 Poly(A) RNA polymerase, mitochondrial-like, central palm domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1287
AccB1I GGYRCC 1 cut(s) 1347
AccBSI CCGCTC 1 cut(s) 408
AccI GTMKAC 2 cut(s) 826, 1408
AccII CGCG 1 cut(s) 1404
AciI CCGC 3 cut(s) 342, 406, 1404
AclWI GGATC 2 cut(s) 749, 1115
AcsI RAATTY 4 cut(s) 353, 378, 658, 880
AfaI GTAC 2 cut(s) 444, 1232
AfiI CCNNNNNNNGG 3 cut(s) 133, 412, 1361
AflII CTTAAG 1 cut(s) 451
AgeI ACCGGT 1 cut(s) 166
AgsI TTSAA 3 cut(s) 56, 521, 1313
AhdI GACNNNNNGTC 2 cut(s) 705, 1404
AjiI CACGTC 1 cut(s) 871
AloI GAACNNNNNNTCC 2 cut(s) 62, 94
AluBI AGCT 6 cut(s) 23, 156, 373, 403, 927, 1097
AluI AGCT 6 cut(s) 23, 156, 373, 403, 927, 1097
Alw21I GWGCWC 1 cut(s) 625
Alw26I GTCTC 1 cut(s) 1121
AlwI GGATC 2 cut(s) 749, 1115
AlwNI CAGNNNCTG 1 cut(s) 480
AoxI GGCC 1 cut(s) 615
ApeKI GCWGC 1 cut(s) 255
ApoI RAATTY 4 cut(s) 353, 378, 658, 880
AsiGI ACCGGT 1 cut(s) 166
AspS9I GGNCC 2 cut(s) 262, 615
AsuC2I CCSGG 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 1208
AsuII TTCGAA 1 cut(s) 10
AvaII GGWCC 1 cut(s) 262
BanI GGYRCC 1 cut(s) 1347
Bbv12I GWGCWC 1 cut(s) 625
BbvI GCAGC 1 cut(s) 267
BccI CCATC 2 cut(s) 740, 1359
BceAI ACGGC 1 cut(s) 547
BciVI GTATCC 1 cut(s) 1082
BclI TGATCA 1 cut(s) 484
BcnI CCSGG 1 cut(s) 260
BcoDI GTCTC 1 cut(s) 1121
BfaI CTAG 7 cut(s) 122, 189, 374, 459, 680, 876, 1143
BfmI CTRYAG 4 cut(s) 151, 225, 1098, 1180
BfrI CTTAAG 1 cut(s) 451
BfuI GTATCC 1 cut(s) 1082
BisI GCNGC 1 cut(s) 256
BlsI GCNGC 1 cut(s) 257
Bme1390I CCNGG 1 cut(s) 260
Bme18I GGWCC 1 cut(s) 262
BmeRI GACNNNNNGTC 2 cut(s) 705, 1404
BmgBI CACGTC 1 cut(s) 871
BmgT120I GGNCC 2 cut(s) 262, 615
BmiI GGNNCC 4 cut(s) 465, 910, 1029, 1349
BmrFI CCNGG 1 cut(s) 260
BmrI ACTGGG 2 cut(s) 805, 1183
BmsI GCATC 2 cut(s) 95, 136
BmuI ACTGGG 2 cut(s) 805, 1183
BplI GAGNNNNNCTC 2 cut(s) 975, 1007
BpmI CTGGAG 1 cut(s) 1002
Bpu14I TTCGAA 1 cut(s) 10
BpuEI CTTGAG 2 cut(s) 287, 1286
BpuMI CCSGG 1 cut(s) 260
Bsa29I ATCGAT 1 cut(s) 753
BsaWI WCCGGW 1 cut(s) 166
Bsc4I CCNNNNNNNGG 3 cut(s) 133, 412, 1361
Bse118I RCCGGY 2 cut(s) 166, 1344
Bse1I ACTGG 4 cut(s) 499, 800, 1178, 1371
BseCI ATCGAT 1 cut(s) 753
BseGI GGATG 2 cut(s) 325, 1351
BseLI CCNNNNNNNGG 3 cut(s) 133, 412, 1361
BseNI ACTGG 4 cut(s) 499, 800, 1178, 1371
BseRI GAGGAG 1 cut(s) 1139
BseXI GCAGC 1 cut(s) 267
BseYI CCCAGC 1 cut(s) 23
Bsh1236I CGCG 1 cut(s) 1404
Bsh1285I CGRYCG 1 cut(s) 167
BshFI GGCC 1 cut(s) 617
BshNI GGYRCC 1 cut(s) 1347
BshTI ACCGGT 1 cut(s) 166
BshVI ATCGAT 1 cut(s) 753
BsiEI CGRYCG 1 cut(s) 167
BsiHKAI GWGCWC 1 cut(s) 625
BsiSI CCGG 3 cut(s) 167, 260, 1345
BslFI GGGAC 2 cut(s) 505, 813
BslI CCNNNNNNNGG 3 cut(s) 133, 412, 1361
BsmAI GTCTC 1 cut(s) 1121
BsmFI GGGAC 2 cut(s) 505, 813
BsnI GGCC 1 cut(s) 617
Bsp119I TTCGAA 1 cut(s) 10
Bsp1286I GDGCHC 1 cut(s) 625
Bsp143I GATC 4 cut(s) 484, 549, 754, 1107
BspACI CCGC 3 cut(s) 342, 406, 1404
BspANI GGCC 1 cut(s) 617
BspDI ATCGAT 1 cut(s) 753
BspFNI CGCG 1 cut(s) 1404
BspHI TCATGA 1 cut(s) 1132
BspLI GGNNCC 4 cut(s) 465, 910, 1029, 1349
BspPI GGATC 2 cut(s) 749, 1115
BspT104I TTCGAA 1 cut(s) 10
BspT107I GGYRCC 1 cut(s) 1347
BspTI CTTAAG 1 cut(s) 451
BsrBI CCGCTC 1 cut(s) 408
BsrFI RCCGGY 2 cut(s) 166, 1344
BsrI ACTGG 4 cut(s) 499, 800, 1178, 1371
BssAI RCCGGY 2 cut(s) 166, 1344
BssMI GATC 4 cut(s) 484, 549, 754, 1107
Bst4CI ACNGT 6 cut(s) 517, 831, 943, 1021, 1235, 1309
Bst6I CTCTTC 2 cut(s) 243, 1114
BstAFI CTTAAG 1 cut(s) 451
BstBI TTCGAA 1 cut(s) 10
BstDEI CTNAG 2 cut(s) 90, 1416
BstENI CCTNNNNNAGG 1 cut(s) 131
BstF5I GGATG 2 cut(s) 325, 1351
BstFNI CGCG 1 cut(s) 1404
BstKTI GATC 4 cut(s) 487, 552, 757, 1110
BstMAI GTCTC 1 cut(s) 1121
BstMBI GATC 4 cut(s) 484, 549, 754, 1107
BstMCI CGRYCG 1 cut(s) 167
BstMWI GCNNNNNNNGC 1 cut(s) 531
BstSCI CCNGG 1 cut(s) 258
BstSFI CTRYAG 4 cut(s) 151, 225, 1098, 1180
BstUI CGCG 1 cut(s) 1404
BstV1I GCAGC 1 cut(s) 267
Bsu15I ATCGAT 1 cut(s) 753
BsuI GTATCC 1 cut(s) 1082
BsuRI GGCC 1 cut(s) 617
BsuTUI ATCGAT 1 cut(s) 753
BtgZI GCGATG 1 cut(s) 302
BtrI CACGTC 1 cut(s) 871
BtsCI GGATG 2 cut(s) 325, 1351
CaiI CAGNNNCTG 1 cut(s) 480
CciI TCATGA 1 cut(s) 1132
Cfr10I RCCGGY 2 cut(s) 166, 1344
Cfr13I GGNCC 2 cut(s) 262, 615
ClaI ATCGAT 1 cut(s) 753
CseI GACGC 1 cut(s) 630
Csp6I GTAC 2 cut(s) 443, 1231
CspAI ACCGGT 1 cut(s) 166
CspCI CAANNNNNGTGG 2 cut(s) 1194, 1229
CviAII CATG 3 cut(s) 626, 1133, 1318
CviQI GTAC 2 cut(s) 443, 1231
DdeI CTNAG 2 cut(s) 90, 1416
DpnI GATC 4 cut(s) 486, 551, 756, 1109
DpnII GATC 4 cut(s) 484, 549, 754, 1107
DraI TTTAAA 1 cut(s) 742
DriI GACNNNNNGTC 2 cut(s) 705, 1404
Eam1104I CTCTTC 2 cut(s) 243, 1114
Eam1105I GACNNNNNGTC 2 cut(s) 705, 1404
EarI CTCTTC 2 cut(s) 243, 1114
Eco32I GATATC 1 cut(s) 666
Eco47I GGWCC 1 cut(s) 262
EcoNI CCTNNNNNAGG 1 cut(s) 131
EcoRI GAATTC 1 cut(s) 658
EcoRV GATATC 1 cut(s) 666
FaeI CATG 3 cut(s) 629, 1136, 1321
FalI AAGNNNNNCTT 2 cut(s) 804, 836
FaqI GGGAC 2 cut(s) 505, 813
FatI CATG 3 cut(s) 625, 1132, 1317
FbaI TGATCA 1 cut(s) 484
FblI GTMKAC 2 cut(s) 826, 1408
Fnu4HI GCNGC 1 cut(s) 256
FokI GGATG 2 cut(s) 332, 1338
Fsp4HI GCNGC 1 cut(s) 256
FspBI CTAG 7 cut(s) 122, 189, 374, 459, 680, 876, 1143
GluI GCNGC 1 cut(s) 256
GsaI CCCAGC 1 cut(s) 27
GsuI CTGGAG 1 cut(s) 1002
HaeIII GGCC 1 cut(s) 617
HapII CCGG 3 cut(s) 167, 260, 1345
HgaI GACGC 1 cut(s) 630
Hin1II CATG 3 cut(s) 629, 1136, 1321
HincII GTYRAC 1 cut(s) 634
HindII GTYRAC 1 cut(s) 634
HinfI GANTC 8 cut(s) 52, 477, 700, 750, 815, 1071, 1129, 1399
HpaI GTTAAC 1 cut(s) 634
HpaII CCGG 3 cut(s) 167, 260, 1345
HphI GGTGA 1 cut(s) 1208
Hpy166II GTNNAC 4 cut(s) 634, 827, 1325, 1409
Hpy188I TCNGA 6 cut(s) 247, 352, 476, 558, 588, 1377
Hpy188III TCNNGA 7 cut(s) 362, 433, 812, 1133, 1143, 1244, 1303
Hpy8I GTNNAC 4 cut(s) 634, 827, 1325, 1409
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 6 cut(s) 517, 831, 943, 1021, 1235, 1309
HpyCH4IV ACGT 3 cut(s) 296, 805, 870
HpyCH4V TGCA 4 cut(s) 395, 836, 887, 1340
HpyF10VI GCNNNNNNNGC 1 cut(s) 531
HpyF3I CTNAG 2 cut(s) 90, 1416
HpySE526I ACGT 3 cut(s) 296, 805, 870
Hsp92II CATG 3 cut(s) 629, 1136, 1321
Ksp22I TGATCA 1 cut(s) 484
KspAI GTTAAC 1 cut(s) 634
Kzo9I GATC 4 cut(s) 484, 549, 754, 1107
LmnI GCTCC 4 cut(s) 408, 908, 932, 1027
Lsp1109I GCAGC 1 cut(s) 267
LweI GCATC 2 cut(s) 95, 136
MaeI CTAG 7 cut(s) 122, 189, 374, 459, 680, 876, 1143
MaeII ACGT 3 cut(s) 296, 805, 870
MaeIII GTNAC 3 cut(s) 642, 899, 1112
MalI GATC 4 cut(s) 486, 551, 756, 1109
MbiI CCGCTC 1 cut(s) 408
MboI GATC 4 cut(s) 484, 549, 754, 1107
MboII GAAGA 4 cut(s) 79, 260, 1131, 1211
MfeI CAATTG 1 cut(s) 468
MhlI GDGCHC 1 cut(s) 625
MluCI AATT 8 cut(s) 197, 353, 378, 468, 570, 658, 714, 880
MlyI GAGTC 4 cut(s) 694, 1080, 1123, 1393
MseI TTAA 9 cut(s) 330, 452, 539, 606, 633, 741, 791, 849, 1367
MslI CAYNNNNRTG 1 cut(s) 1332
MspCI CTTAAG 1 cut(s) 451
MspI CCGG 3 cut(s) 167, 260, 1345
MspR9I CCNGG 1 cut(s) 260
MunI CAATTG 1 cut(s) 468
MvnI CGCG 1 cut(s) 1404
MwoI GCNNNNNNNGC 1 cut(s) 531
NciI CCSGG 1 cut(s) 260
NdeII GATC 4 cut(s) 484, 549, 754, 1107
NlaIII CATG 3 cut(s) 629, 1136, 1321
NlaIV GGNNCC 4 cut(s) 465, 910, 1029, 1349
NmuCI GTSAC 3 cut(s) 642, 899, 1112
NspV TTCGAA 1 cut(s) 10
PagI TCATGA 1 cut(s) 1132
PfeI GAWTC 4 cut(s) 52, 477, 750, 815
PinAI ACCGGT 1 cut(s) 166
PkrI GCNGC 1 cut(s) 257
PleI GAGTC 4 cut(s) 694, 1079, 1123, 1393
PpsI GAGTC 4 cut(s) 694, 1079, 1123, 1393
PsiI TTATAA 1 cut(s) 1287
PspFI CCCAGC 1 cut(s) 23
PspN4I GGNNCC 4 cut(s) 465, 910, 1029, 1349
PspPI GGNCC 2 cut(s) 262, 615
PstNI CAGNNNCTG 1 cut(s) 480
RsaI GTAC 2 cut(s) 444, 1232
RsaNI GTAC 2 cut(s) 443, 1231
RseI CAYNNNNRTG 1 cut(s) 1332
SaqAI TTAA 9 cut(s) 330, 452, 539, 606, 633, 741, 791, 849, 1367
SatI GCNGC 1 cut(s) 256
Sau3AI GATC 4 cut(s) 484, 549, 754, 1107
Sau96I GGNCC 2 cut(s) 262, 615
SchI GAGTC 4 cut(s) 694, 1080, 1123, 1393
ScrFI CCNGG 1 cut(s) 260
SduI GDGCHC 1 cut(s) 625
SfaNI GCATC 2 cut(s) 95, 136
SfcI CTRYAG 4 cut(s) 151, 225, 1098, 1180
SfuI TTCGAA 1 cut(s) 10
SinI GGWCC 1 cut(s) 262
SmiMI CAYNNNNRTG 1 cut(s) 1332
SmlI CTYRAG 3 cut(s) 266, 451, 1301
SmoI CTYRAG 3 cut(s) 266, 451, 1301
Sse9I AATT 8 cut(s) 197, 353, 378, 468, 570, 658, 714, 880
SsiI CCGC 3 cut(s) 342, 406, 1404
SspMI CTAG 7 cut(s) 122, 189, 374, 459, 680, 876, 1143
StyD4I CCNGG 1 cut(s) 258
TaaI ACNGT 6 cut(s) 517, 831, 943, 1021, 1235, 1309
TaiI ACGT 3 cut(s) 299, 808, 873
TaqI TCGA 7 cut(s) 10, 41, 163, 501, 662, 753, 1237
TasI AATT 8 cut(s) 197, 353, 378, 468, 570, 658, 714, 880
TatI WGTACW 1 cut(s) 1230
TfiI GAWTC 4 cut(s) 52, 477, 750, 815
Tru1I TTAA 9 cut(s) 330, 452, 539, 606, 633, 741, 791, 849, 1367
Tru9I TTAA 9 cut(s) 330, 452, 539, 606, 633, 741, 791, 849, 1367
TseFI GTSAC 3 cut(s) 642, 899, 1112
TseI GCWGC 1 cut(s) 255
Tsp45I GTSAC 3 cut(s) 642, 899, 1112
TspDTI ATGAA 2 cut(s) 305, 1149
TspGWI ACGGA 2 cut(s) 921, 1131
Vha464I CTTAAG 1 cut(s) 451
VpaK11BI GGWCC 1 cut(s) 262
XagI CCTNNNNNAGG 1 cut(s) 131
XapI RAATTY 4 cut(s) 353, 378, 658, 880
XbaI TCTAGA 1 cut(s) 1142
XcmI CCANNNNNNNNNTGG 1 cut(s) 1358
XmiI GTMKAC 2 cut(s) 826, 1408
XspI CTAG 7 cut(s) 122, 189, 374, 459, 680, 876, 1143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.