FvH4_1g25680

RNA uridylyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0006587
Physical Location & Seq
Reverse (-)
17520894 .. 17527192
6299 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g25680.t2

Sequence Viewer

Length: 1485 bp
ATGGCCTTGAGCCGCACCGAGATGTTCAATGAAGCTAAGAAGCTCGAGTTGCAAGGATTAGAGAAATACATGATCTCTTCTGCATGTATGCCTAAACTTGATGAGCTACTTCATGATGTTTACGCCGCTCACCGTCCAAAGCCGATTGATTATCACAATCGGAGAGATTTGATTCGGATATTCAATGACATCTCCAAGGAATTATATGGCAAATCTGGCAATATCCCGGTTGTTGAGGTCTATGGTTCGTTCGTGATGGATTTGTTCAGTGTTGAAAGTGATCTTGATCTTTCTGTTAGTTTCTGCAACAGTTTCGGCAGTCTTCCTCGAGATATGAAGATCAAAACCCTTCGGAAGTTTGCTAAAAAGTTTTTTGCTCTTCAAAGGGCAGGGCATGTTGATGGTGTACAGACAATTATGAGTGCTAGGGTTCCTATAATCAAGCTTGTAGACTGTGGAACCGGAATTGAATGTGATTTATCAGTTGAGAACACGGATGGCATTGTAAAATCCCAGATTGTCTACCTAATATCTAGAATTGACCGAAGGTTTCAGAAACTGAGTTTTCTGATGAAAGCCTGGGCAAAAGCACATAATATCAACTCTCCCAAAGATCGAACTCTGAGCTCTTTTGGCATAATATCATTGGTTGCTTTCCATCTGCAGACTCGAGATCCGCCAATATTACCTCCGTTATCTACTTTGTTTGAAGATGGAACTGATCCTGCCTCTGTAATGAAGAGAATAGAAACTTATTTGGAGTTTGGAAAGAGAAACAAAGAATCCGTGGCCGATCTTTTATTTTCTCTGTTAGTCAAGGTAGCATCAGCTGAAAATCTCTGGCAGAAAGGTCTATGTGCGAGTCTGTACGAAGGATCGTGGACATCAAAATTATGGGATCCTTACTATAATTCTATTAATGTTGAGGATTTCACAGATCTATCTCAAAATGTTGCAAGGGCGGTAGGAACAGAAGAATTCCAAGAGATCTATAGGTGTATTCATTCTTCTCTCAGTAACCTCTTAGCATTTTCAGATAACCAGATGGAGGGAAACAAGTTGGTGGATCTTTTGTTTGGAACGAAGTCGGCATGCATTCCTAGGCAATTGAGTACTAAAAATGTTGATGAAAGCAAAGATCAAAGTCCTCCAGAGCTTAAAGGTCACCAGACAAAGCGGGTGCGAGTGGAAGTTAAGGCTGGGATAGGCTGGGAAGAAAACCAGCTAGAGAAAGGTTTGAACAGAAAACAGCCAACTCAAAGTTCAGGAACAGCAAATCAAGTGGAATTTAGGGGAGGAAGACAACAAGCTGATGGCCCAGTAGGAAACACGCAAGTGGATGGTTTGGGAGGAGACCAGCAATATCATGGTGAAGCAACATCAAACTTAAATGCTAAAGACGAAACTCCACTAGTTACTACTCGAACTCCACTTGTTGGCACATTGTGCAATTCAATTTCTCAGCAGACTCCACTAGTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTP_transf_2

Protein Analysis

495

Amino Acids

55.2

Weight (kDa)

6.77

Isoelectric Point (pI)

37.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MTPAP-like_central PF22600 33 - 178 2.7e-24 Poly(A) RNA polymerase, mitochondrial-like, central palm domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1436
AccBSI CCGCTC 1 cut(s) 128
AccI GTMKAC 2 cut(s) 450, 522
AciI CCGC 5 cut(s) 13, 126, 677, 962, 1177
AclWI GGATC 6 cut(s) 668, 716, 883, 893, 906, 1074
AcoI YGGCCR 1 cut(s) 789
AcsI RAATTY 2 cut(s) 977, 1286
AdeI CACNNNGTG 1 cut(s) 1446
AfaI GTAC 3 cut(s) 408, 869, 1114
AfiI CCNNNNNNNGG 2 cut(s) 1048, 1436
AgsI TTSAA 8 cut(s) 28, 184, 275, 383, 470, 710, 1240, 1455
AhlI ACTAGT 2 cut(s) 1411, 1474
AjnI CCWGG 1 cut(s) 578
AjuI GAANNNNNNNTTGG 2 cut(s) 1246, 1278
AleI CACNNNNGTG 1 cut(s) 1334
AluBI AGCT 9 cut(s) 35, 43, 106, 445, 627, 830, 1156, 1225, 1310
AluI AGCT 9 cut(s) 35, 43, 106, 445, 627, 830, 1156, 1225, 1310
Alw21I GWGCWC 1 cut(s) 629
Alw26I GTCTC 1 cut(s) 1347
AlwI GGATC 6 cut(s) 668, 716, 883, 893, 906, 1074
AlwNI CAGNNNCTG 1 cut(s) 559
Ama87I CYCGRG 3 cut(s) 44, 327, 669
AoxI GGCC 3 cut(s) 3, 789, 1315
ApoI RAATTY 2 cut(s) 977, 1286
AseI ATTAAT 1 cut(s) 918
AspA2I CCTAGG 1 cut(s) 1100
AspS9I GGNCC 1 cut(s) 1316
AsuC2I CCSGG 1 cut(s) 227
AsuHPI GGTGA 3 cut(s) 122, 1157, 1382
AvaI CYCGRG 3 cut(s) 44, 327, 669
AvrII CCTAGG 1 cut(s) 1100
BamHI GGATCC 1 cut(s) 898
BanII GRGCYC 1 cut(s) 629
BarI GAAGNNNNNNTAC 2 cut(s) 991, 1023
BbsI GAAGAC 2 cut(s) 314, 1306
Bbv12I GWGCWC 1 cut(s) 629
BccI CCATC 8 cut(s) 250, 395, 491, 666, 707, 1039, 1307, 1334
BcgI CGANNNNNNTGC 2 cut(s) 295, 329
BciT130I CCWGG 1 cut(s) 580
BcnI CCSGG 1 cut(s) 227
BcoDI GTCTC 1 cut(s) 1347
BcuI ACTAGT 2 cut(s) 1411, 1474
BfaI CTAG 6 cut(s) 426, 534, 1101, 1226, 1412, 1475
BfmI CTRYAG 2 cut(s) 662, 991
BglII AGATCT 2 cut(s) 937, 987
BisI GCNGC 2 cut(s) 13, 126
BlnI CCTAGG 1 cut(s) 1100
BlsI GCNGC 2 cut(s) 14, 127
BmcAI AGTACT 1 cut(s) 1114
Bme1390I CCNGG 2 cut(s) 227, 580
BmeT110I CYCGRG 3 cut(s) 44, 327, 669
BmgT120I GGNCC 1 cut(s) 1316
BmiI GGNNCC 3 cut(s) 432, 460, 900
BmrFI CCNGG 2 cut(s) 227, 580
BmrI ACTGGG 1 cut(s) 1313
BmsI GCATC 1 cut(s) 833
BmuI ACTGGG 1 cut(s) 1313
BpiI GAAGAC 2 cut(s) 314, 1306
BpmI CTGGAG 1 cut(s) 1134
BpuEI CTTGAG 1 cut(s) 28
BpuMI CCSGG 1 cut(s) 227
BsaBI GATNNNNATC 1 cut(s) 285
BsaI GGTCTC 1 cut(s) 1347
BsaJI CCNNGG 4 cut(s) 195, 579, 786, 1100
BsaWI WCCGGW 1 cut(s) 461
BsaXI ACNNNNNCTCC 2 cut(s) 1411, 1441
Bsc4I CCNNNNNNNGG 2 cut(s) 1048, 1436
Bse1I ACTGG 1 cut(s) 1319
Bse8I GATNNNNATC 1 cut(s) 285
BseBI CCWGG 1 cut(s) 580
BseDI CCNNGG 4 cut(s) 195, 579, 786, 1100
BseGI GGATG 2 cut(s) 502, 1345
BseJI GATNNNNATC 1 cut(s) 285
BseLI CCNNNNNNNGG 2 cut(s) 1048, 1436
BseMII CTCAG 4 cut(s) 551, 614, 1027, 1475
BseNI ACTGG 1 cut(s) 1319
BseRI GAGGAG 1 cut(s) 1365
BseYI CCCAGC 2 cut(s) 1199, 1209
BshFI GGCC 3 cut(s) 5, 791, 1317
BsiHKAI GWGCWC 1 cut(s) 629
BsiHKCI CYCGRG 3 cut(s) 44, 327, 669
BsiSI CCGG 2 cut(s) 227, 462
BslI CCNNNNNNNGG 2 cut(s) 1048, 1436
BsmAI GTCTC 1 cut(s) 1347
BsmI GAATGC 1 cut(s) 1095
BsnI GGCC 3 cut(s) 5, 791, 1317
Bso31I GGTCTC 1 cut(s) 1347
BsoBI CYCGRG 3 cut(s) 44, 327, 669
Bsp1286I GDGCHC 1 cut(s) 629
Bsp1407I TGTACA 1 cut(s) 406
BspACI CCGC 5 cut(s) 13, 126, 677, 962, 1177
BspANI GGCC 3 cut(s) 5, 791, 1317
BspCNI CTCAG 4 cut(s) 552, 615, 1026, 1474
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 3 cut(s) 432, 460, 900
BspMAI CTGCAG 1 cut(s) 666
BspPI GGATC 6 cut(s) 668, 716, 883, 893, 906, 1074
BspQI GCTCTTC 1 cut(s) 384
BspTNI GGTCTC 1 cut(s) 1347
BsrBI CCGCTC 1 cut(s) 128
BsrGI TGTACA 1 cut(s) 406
BsrI ACTGG 1 cut(s) 1319
BssECI CCNNGG 4 cut(s) 195, 579, 786, 1100
BssT1I CCWWGG 2 cut(s) 195, 1100
Bst2UI CCWGG 1 cut(s) 580
Bst4CI ACNGT 3 cut(s) 134, 311, 455
Bst6I CTCTTC 3 cut(s) 82, 384, 734
BstAPI GCANNNNNTGC 1 cut(s) 1446
BstAUI TGTACA 1 cut(s) 406
BstC8I GCNNGC 1 cut(s) 1093
BstDEI CTNAG 6 cut(s) 36, 560, 623, 1013, 1024, 1461
BstDSI CCRYGG 1 cut(s) 786
BstEII GGTNACC 1 cut(s) 1163
BstF5I GGATG 2 cut(s) 502, 1345
BstMAI GTCTC 1 cut(s) 1347
BstMWI GCNNNNNNNGC 4 cut(s) 49, 216, 633, 1446
BstNI CCWGG 1 cut(s) 580
BstNSI RCATGY 3 cut(s) 87, 398, 1095
BstPI GGTNACC 1 cut(s) 1163
BstSCI CCNGG 2 cut(s) 225, 578
BstSFI CTRYAG 2 cut(s) 662, 991
BstV2I GAAGAC 2 cut(s) 314, 1306
BstX2I RGATCY 5 cut(s) 673, 898, 937, 987, 1066
BstYI RGATCY 5 cut(s) 673, 898, 937, 987, 1066
BsuRI GGCC 3 cut(s) 5, 791, 1317
BtgI CCRYGG 1 cut(s) 786
BtsCI GGATG 2 cut(s) 502, 1345
BtsIMutI CAGTG 1 cut(s) 274
Cac8I GCNNGC 1 cut(s) 1093
CaiI CAGNNNCTG 1 cut(s) 559
CciI TCATGA 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 1316
Csp6I GTAC 3 cut(s) 407, 868, 1113
CspCI CAANNNNNGTGG 2 cut(s) 1263, 1298
CviAII CATG 6 cut(s) 70, 84, 113, 395, 1092, 1367
CviQI GTAC 3 cut(s) 407, 868, 1113
DdeI CTNAG 6 cut(s) 36, 560, 623, 1013, 1024, 1461
DraIII CACNNNGTG 1 cut(s) 1446
EaeI YGGCCR 1 cut(s) 789
Eam1104I CTCTTC 3 cut(s) 82, 384, 734
EarI CTCTTC 3 cut(s) 82, 384, 734
EciI GGCGGA 1 cut(s) 666
Ecl136II GAGCTC 1 cut(s) 627
Eco130I CCWWGG 2 cut(s) 195, 1100
Eco24I GRGCYC 1 cut(s) 629
Eco31I GGTCTC 1 cut(s) 1347
Eco53kI GAGCTC 1 cut(s) 627
Eco88I CYCGRG 3 cut(s) 44, 327, 669
Eco91I GGTNACC 1 cut(s) 1163
EcoICRI GAGCTC 1 cut(s) 627
EcoO65I GGTNACC 1 cut(s) 1163
EcoRI GAATTC 1 cut(s) 977
EcoRII CCWGG 1 cut(s) 578
EcoT14I CCWWGG 2 cut(s) 195, 1100
EcoT22I ATGCAT 1 cut(s) 1097
EcoT38I GRGCYC 1 cut(s) 629
ErhI CCWWGG 2 cut(s) 195, 1100
FaeI CATG 6 cut(s) 73, 87, 116, 398, 1095, 1370
FatI CATG 6 cut(s) 69, 83, 112, 394, 1091, 1366
FauI CCCGC 1 cut(s) 1170
FblI GTMKAC 2 cut(s) 450, 522
Fnu4HI GCNGC 2 cut(s) 13, 126
FokI GGATG 2 cut(s) 509, 1352
FriOI GRGCYC 1 cut(s) 629
Fsp4HI GCNGC 2 cut(s) 13, 126
FspBI CTAG 6 cut(s) 426, 534, 1101, 1226, 1412, 1475
GluI GCNGC 2 cut(s) 13, 126
GsaI CCCAGC 2 cut(s) 1203, 1213
GsuI CTGGAG 1 cut(s) 1134
HaeIII GGCC 3 cut(s) 5, 791, 1317
HapII CCGG 2 cut(s) 227, 462
Hin1II CATG 6 cut(s) 73, 87, 116, 398, 1095, 1370
HindIII AAGCTT 1 cut(s) 443
HinfI GANTC 5 cut(s) 172, 667, 782, 862, 1468
HpaII CCGG 2 cut(s) 227, 462
HphI GGTGA 3 cut(s) 122, 1157, 1382
Hpy166II GTNNAC 5 cut(s) 121, 407, 451, 523, 882
Hpy188I TCNGA 7 cut(s) 162, 177, 354, 555, 570, 624, 1036
Hpy188III TCNNGA 8 cut(s) 113, 253, 284, 329, 534, 671, 1151, 1266
Hpy8I GTNNAC 5 cut(s) 121, 407, 451, 523, 882
HpyAV CCTTC 3 cut(s) 359, 540, 866
HpyCH4III ACNGT 3 cut(s) 134, 311, 455
HpyCH4V TGCA 7 cut(s) 52, 83, 306, 664, 956, 1095, 1449
HpyF10VI GCNNNNNNNGC 4 cut(s) 49, 216, 633, 1446
HpyF3I CTNAG 6 cut(s) 36, 560, 623, 1013, 1024, 1461
Hsp92II CATG 6 cut(s) 73, 87, 116, 398, 1095, 1370
LguI GCTCTTC 1 cut(s) 384
LweI GCATC 1 cut(s) 833
MaeI CTAG 6 cut(s) 426, 534, 1101, 1226, 1412, 1475
MaeIII GTNAC 3 cut(s) 1016, 1163, 1414
MbiI CCGCTC 1 cut(s) 128
MfeI CAATTG 1 cut(s) 1106
MflI RGATCY 5 cut(s) 673, 898, 937, 987, 1066
MhlI GDGCHC 1 cut(s) 629
MlyI GAGTC 3 cut(s) 661, 871, 1462
Mph1103I ATGCAT 1 cut(s) 1097
MseI TTAA 5 cut(s) 918, 1158, 1194, 1388, 1483
MslI CAYNNNNRTG 3 cut(s) 20, 399, 1334
MspA1I CMGCKG 1 cut(s) 830
MspI CCGG 2 cut(s) 227, 462
MspR9I CCNGG 2 cut(s) 227, 580
MunI CAATTG 1 cut(s) 1106
Mva1269I GAATGC 1 cut(s) 1095
MvaI CCWGG 1 cut(s) 580
MwoI GCNNNNNNNGC 4 cut(s) 49, 216, 633, 1446
NciI CCSGG 1 cut(s) 227
NlaIII CATG 6 cut(s) 73, 87, 116, 398, 1095, 1370
NlaIV GGNNCC 3 cut(s) 432, 460, 900
NmuCI GTSAC 1 cut(s) 1163
NsiI ATGCAT 1 cut(s) 1097
NspI RCATGY 3 cut(s) 87, 398, 1095
OliI CACNNNNGTG 1 cut(s) 1334
PaeI GCATGC 1 cut(s) 1095
PaeR7I CTCGAG 3 cut(s) 44, 327, 669
PagI TCATGA 1 cut(s) 112
PciSI GCTCTTC 1 cut(s) 384
PctI GAATGC 1 cut(s) 1095
PfeI GAWTC 2 cut(s) 172, 782
PflMI CCANNNNNTGG 1 cut(s) 1436
PkrI GCNGC 2 cut(s) 14, 127
PleI GAGTC 3 cut(s) 661, 870, 1462
PpsI GAGTC 3 cut(s) 661, 870, 1462
PshBI ATTAAT 1 cut(s) 918
Psp124BI GAGCTC 1 cut(s) 629
Psp6I CCWGG 1 cut(s) 578
PspEI GGTNACC 1 cut(s) 1163
PspFI CCCAGC 2 cut(s) 1199, 1209
PspGI CCWGG 1 cut(s) 578
PspN4I GGNNCC 3 cut(s) 432, 460, 900
PspPI GGNCC 1 cut(s) 1316
PspXI VCTCGAGB 1 cut(s) 44
PstI CTGCAG 1 cut(s) 666
PstNI CAGNNNCTG 1 cut(s) 559
PsuI RGATCY 5 cut(s) 673, 898, 937, 987, 1066
PvuII CAGCTG 1 cut(s) 830
RsaI GTAC 3 cut(s) 408, 869, 1114
RsaNI GTAC 3 cut(s) 407, 868, 1113
RseI CAYNNNNRTG 3 cut(s) 20, 399, 1334
SacI GAGCTC 1 cut(s) 629
SapI GCTCTTC 1 cut(s) 384
SaqAI TTAA 5 cut(s) 918, 1158, 1194, 1388, 1483
SatI GCNGC 2 cut(s) 13, 126
Sau96I GGNCC 1 cut(s) 1316
ScaI AGTACT 1 cut(s) 1114
SchI GAGTC 3 cut(s) 661, 871, 1462
ScrFI CCNGG 2 cut(s) 227, 580
SduI GDGCHC 1 cut(s) 629
SfaNI GCATC 1 cut(s) 833
SfcI CTRYAG 2 cut(s) 662, 991
Sfr274I CTCGAG 3 cut(s) 44, 327, 669
SlaI CTCGAG 3 cut(s) 44, 327, 669
SmiMI CAYNNNNRTG 3 cut(s) 20, 399, 1334
SmlI CTYRAG 4 cut(s) 7, 44, 327, 669
SmoI CTYRAG 4 cut(s) 7, 44, 327, 669
SpeI ACTAGT 2 cut(s) 1411, 1474
SphI GCATGC 1 cut(s) 1095
SsiI CCGC 5 cut(s) 13, 126, 677, 962, 1177
SspI AATATT 1 cut(s) 684
SspMI CTAG 6 cut(s) 426, 534, 1101, 1226, 1412, 1475
SstI GAGCTC 1 cut(s) 629
StyD4I CCNGG 2 cut(s) 225, 578
StyI CCWWGG 2 cut(s) 195, 1100
TaaI ACNGT 3 cut(s) 134, 311, 455
TaqI TCGA 5 cut(s) 45, 328, 616, 670, 1423
TaqII GACCGA 1 cut(s) 558
TatI WGTACW 2 cut(s) 406, 1112
TauI GCSGC 2 cut(s) 15, 128
TfiI GAWTC 2 cut(s) 172, 782
Tru1I TTAA 5 cut(s) 918, 1158, 1194, 1388, 1483
Tru9I TTAA 5 cut(s) 918, 1158, 1194, 1388, 1483
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 1 cut(s) 1163
Tsp45I GTSAC 1 cut(s) 1163
TspDTI ATGAA 7 cut(s) 45, 101, 350, 587, 752, 992, 1143
TspGWI ACGGA 3 cut(s) 509, 681, 775
TspRI CASTG 1 cut(s) 274
Van91I CCANNNNNTGG 1 cut(s) 1436
VspI ATTAAT 1 cut(s) 918
XapI RAATTY 2 cut(s) 977, 1286
XbaI TCTAGA 1 cut(s) 533
XceI RCATGY 3 cut(s) 87, 398, 1095
XcmI CCANNNNNNNNNTGG 1 cut(s) 1364
XhoI CTCGAG 3 cut(s) 44, 327, 669
XmaJI CCTAGG 1 cut(s) 1100
XmiI GTMKAC 2 cut(s) 450, 522
XspI CTAG 6 cut(s) 426, 534, 1101, 1226, 1412, 1475
ZrmI AGTACT 1 cut(s) 1114
Zsp2I ATGCAT 1 cut(s) 1097
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.