Rh2DG332000

RNA uridylyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0006587
Physical Location & Seq
Reverse (-)
42350765 .. 42355109
4345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG332000.1

Sequence Viewer

Length: 558 bp
ATGGATTTGTTCAGTGATGAAAGTGATCTTGATCTCTCTGTTAATTTCAGCAACAGTGTAGGCGATCTTCCTCGAGATATGAAGATCAAAACTCTTCGGAAGTTTGCTAAAAAGTTTTTGTCTTTTCAAAGGGCAGGGCATGTTGCTGGTGTACAGACGATTGTGAGTGCTAGGGTTCCTATAATCAAGCTTATAGACTGTGGAACCGGAATTGAGTGTGATTTATCAATTGAGAACAGGGATGGCATTGTAAAATCCCAGATTGTCTACATAATATCTAGAATTGACGGAAGGTTTCGAGAAACTGAGTTTTATGATGAAAGCCTGGGCAAAATACATAATATCAACTGTCCCAAAGATCGAACTCTGAGCTCTTTTGGCATAATATCTTTGGTTGCTTTTCATCTGCAGACTCGAGATCCGCCAATATTACCTCCATTATCTACTTTGTTTGAAGATGGAACTGATCCTGCAACTGTGATGAAAAGAGTAGATACTTATTTGGAGTTTGGAAAAGAAACAAAGAATCCGTGGCAGACCTTTTCTTTACCCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTP_transf_2

Protein Analysis

185

Amino Acids

20.83

Weight (kDa)

5.93

Isoelectric Point (pI)

34.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MTPAP-like_central PF22600 3 - 93 3.4e-17 Poly(A) RNA polymerase, mitochondrial-like, central palm domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 267
AciI CCGC 1 cut(s) 422
AclWI GGATC 2 cut(s) 413, 461
AfaI GTAC 1 cut(s) 153
AgsI TTSAA 2 cut(s) 128, 455
AjnI CCWGG 1 cut(s) 324
AluBI AGCT 2 cut(s) 190, 372
AluI AGCT 2 cut(s) 190, 372
Alw21I GWGCWC 1 cut(s) 374
AlwI GGATC 2 cut(s) 413, 461
Ama87I CYCGRG 2 cut(s) 72, 414
AvaI CYCGRG 2 cut(s) 72, 414
BanII GRGCYC 1 cut(s) 374
BarI GAAGNNNNNNTAC 2 cut(s) 51, 83
Bbv12I GWGCWC 1 cut(s) 374
BccI CCATC 2 cut(s) 236, 452
BciT130I CCWGG 1 cut(s) 326
BfaI CTAG 2 cut(s) 171, 279
BfmI CTRYAG 1 cut(s) 407
Bme1390I CCNGG 1 cut(s) 326
BmeT110I CYCGRG 2 cut(s) 72, 414
BmiI GGNNCC 2 cut(s) 177, 205
BmrFI CCNGG 1 cut(s) 326
BsaBI GATNNNNATC 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 325, 530
BsaWI WCCGGW 1 cut(s) 206
Bse8I GATNNNNATC 1 cut(s) 30
BseBI CCWGG 1 cut(s) 326
BseDI CCNNGG 2 cut(s) 325, 530
BseGI GGATG 1 cut(s) 247
BseJI GATNNNNATC 1 cut(s) 30
BseMII CTCAG 2 cut(s) 297, 359
BsiHKAI GWGCWC 1 cut(s) 374
BsiHKCI CYCGRG 2 cut(s) 72, 414
BsiSI CCGG 1 cut(s) 207
BslFI GGGAC 1 cut(s) 336
BsmFI GGGAC 1 cut(s) 336
BsoBI CYCGRG 2 cut(s) 72, 414
Bsp1286I GDGCHC 1 cut(s) 374
Bsp1407I TGTACA 1 cut(s) 151
Bsp143I GATC 7 cut(s) 25, 31, 64, 84, 358, 418, 466
BspACI CCGC 1 cut(s) 422
BspCNI CTCAG 2 cut(s) 298, 360
BspLI GGNNCC 2 cut(s) 177, 205
BspMAI CTGCAG 1 cut(s) 411
BspPI GGATC 2 cut(s) 413, 461
BsrGI TGTACA 1 cut(s) 151
BssECI CCNNGG 2 cut(s) 325, 530
BssMI GATC 7 cut(s) 25, 31, 64, 84, 358, 418, 466
Bst2UI CCWGG 1 cut(s) 326
Bst4CI ACNGT 4 cut(s) 56, 200, 350, 478
Bst6I CTCTTC 1 cut(s) 99
BstAUI TGTACA 1 cut(s) 151
BstDEI CTNAG 2 cut(s) 306, 368
BstDSI CCRYGG 1 cut(s) 530
BstF5I GGATG 1 cut(s) 247
BstKTI GATC 7 cut(s) 28, 34, 67, 87, 361, 421, 469
BstMBI GATC 7 cut(s) 25, 31, 64, 84, 358, 418, 466
BstMWI GCNNNNNNNGC 1 cut(s) 378
BstNI CCWGG 1 cut(s) 326
BstNSI RCATGY 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 324
BstSFI CTRYAG 1 cut(s) 407
BstX2I RGATCY 1 cut(s) 418
BstYI RGATCY 1 cut(s) 418
BtgI CCRYGG 1 cut(s) 530
BtsCI GGATG 1 cut(s) 247
BtsIMutI CAGTG 2 cut(s) 19, 61
Csp6I GTAC 1 cut(s) 152
CviAII CATG 1 cut(s) 140
CviJI RGCY 3 cut(s) 190, 324, 372
CviKI_1 RGCY 3 cut(s) 190, 324, 372
CviQI GTAC 1 cut(s) 152
DdeI CTNAG 2 cut(s) 306, 368
DpnI GATC 7 cut(s) 27, 33, 66, 86, 360, 420, 468
DpnII GATC 7 cut(s) 25, 31, 64, 84, 358, 418, 466
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
EciI GGCGGA 1 cut(s) 411
Ecl136II GAGCTC 1 cut(s) 372
Eco24I GRGCYC 1 cut(s) 374
Eco53kI GAGCTC 1 cut(s) 372
Eco88I CYCGRG 2 cut(s) 72, 414
EcoICRI GAGCTC 1 cut(s) 372
EcoRII CCWGG 1 cut(s) 324
EcoT38I GRGCYC 1 cut(s) 374
FaeI CATG 1 cut(s) 143
FaiI YATR 8 cut(s) 80, 141, 182, 194, 272, 315, 339, 383
FaqI GGGAC 1 cut(s) 336
FatI CATG 1 cut(s) 139
FblI GTMKAC 1 cut(s) 267
FokI GGATG 1 cut(s) 254
FriOI GRGCYC 1 cut(s) 374
FspBI CTAG 2 cut(s) 171, 279
HapII CCGG 1 cut(s) 207
Hin1II CATG 1 cut(s) 143
HindIII AAGCTT 1 cut(s) 188
HinfI GANTC 2 cut(s) 412, 526
HpaII CCGG 1 cut(s) 207
Hpy166II GTNNAC 2 cut(s) 152, 268
Hpy188I TCNGA 2 cut(s) 99, 369
Hpy188III TCNNGA 5 cut(s) 29, 74, 279, 299, 416
Hpy8I GTNNAC 2 cut(s) 152, 268
HpyAV CCTTC 1 cut(s) 285
HpyCH4III ACNGT 4 cut(s) 56, 200, 350, 478
HpyCH4V TGCA 2 cut(s) 409, 473
HpyF10VI GCNNNNNNNGC 1 cut(s) 378
HpyF3I CTNAG 2 cut(s) 306, 368
Hsp92II CATG 1 cut(s) 143
Kzo9I GATC 7 cut(s) 25, 31, 64, 84, 358, 418, 466
LpnPI CCDG 8 cut(s) 120, 132, 220, 223, 272, 311, 338, 483
MaeI CTAG 2 cut(s) 171, 279
MalI GATC 7 cut(s) 27, 33, 66, 86, 360, 420, 468
MboI GATC 7 cut(s) 25, 31, 64, 84, 358, 418, 466
MboII GAAGA 4 cut(s) 59, 86, 94, 467
MfeI CAATTG 1 cut(s) 228
MflI RGATCY 1 cut(s) 418
MhlI GDGCHC 1 cut(s) 374
MluCI AATT 4 cut(s) 43, 210, 228, 282
MlyI GAGTC 1 cut(s) 406
MnlI CCTC 2 cut(s) 81, 444
MseI TTAA 1 cut(s) 42
MspI CCGG 1 cut(s) 207
MspR9I CCNGG 1 cut(s) 326
MunI CAATTG 1 cut(s) 228
MvaI CCWGG 1 cut(s) 326
MwoI GCNNNNNNNGC 1 cut(s) 378
NdeII GATC 7 cut(s) 25, 31, 64, 84, 358, 418, 466
NlaIII CATG 1 cut(s) 143
NlaIV GGNNCC 2 cut(s) 177, 205
NspI RCATGY 1 cut(s) 143
PaeR7I CTCGAG 2 cut(s) 72, 414
PfeI GAWTC 1 cut(s) 526
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
Psp124BI GAGCTC 1 cut(s) 374
Psp6I CCWGG 1 cut(s) 324
PspGI CCWGG 1 cut(s) 324
PspN4I GGNNCC 2 cut(s) 177, 205
PstI CTGCAG 1 cut(s) 411
PsuI RGATCY 1 cut(s) 418
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
SacI GAGCTC 1 cut(s) 374
SaqAI TTAA 1 cut(s) 42
Sau3AI GATC 7 cut(s) 25, 31, 64, 84, 358, 418, 466
SchI GAGTC 1 cut(s) 406
ScrFI CCNGG 1 cut(s) 326
SduI GDGCHC 1 cut(s) 374
SetI ASST 5 cut(s) 192, 296, 374, 436, 542
SfcI CTRYAG 1 cut(s) 407
Sfr274I CTCGAG 2 cut(s) 72, 414
SlaI CTCGAG 2 cut(s) 72, 414
SmlI CTYRAG 2 cut(s) 72, 414
SmoI CTYRAG 2 cut(s) 72, 414
Sse9I AATT 4 cut(s) 43, 210, 228, 282
SsiI CCGC 1 cut(s) 422
SspI AATATT 1 cut(s) 429
SspMI CTAG 2 cut(s) 171, 279
SstI GAGCTC 1 cut(s) 374
StyD4I CCNGG 1 cut(s) 324
TaaI ACNGT 4 cut(s) 56, 200, 350, 478
TaqI TCGA 4 cut(s) 73, 298, 361, 415
TasI AATT 4 cut(s) 43, 210, 228, 282
TatI WGTACW 1 cut(s) 151
TfiI GAWTC 1 cut(s) 526
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 2 cut(s) 19, 61
TspDTI ATGAA 5 cut(s) 33, 95, 333, 392, 497
TspGWI ACGGA 2 cut(s) 303, 519
TspRI CASTG 2 cut(s) 19, 61
XbaI TCTAGA 1 cut(s) 278
XceI RCATGY 1 cut(s) 143
XhoI CTCGAG 2 cut(s) 72, 414
XmiI GTMKAC 1 cut(s) 267
XspI CTAG 2 cut(s) 171, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.